IVF0016200.1 (mRNA) Melon (IVF77) v1

Overview


Name	IVF0016200.1
Type	mRNA
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	Pol protein
Location	chr04: 6404983 .. 6405228 (+)
Sequence length	246
RNA-Seq Expression	IVF0016200.1
Synteny	IVF0016200.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGTCCTGAGTTAGTTCAGTCTACTAACGAAGCAATTCAGAAGATTAGATCACGCATGCATACCGCTCAGAGTAGACAGAAGAGTTATGCAGATGTGAGGCGGAAGGACCTTGAGTTTGAGATAGGGGATAAGGTGTTCTTAAAGGTAGCACCTATGAAAGGTGTCTTGCGTTTTGAAAGGAGGGGAAAGTTGAGTCCCCGTTTTGTTGGGCCATTTGAGATCTGGAGCGGATTGGCCCTGTAG

mRNA sequence

ATGGGTCCTGAGTTAGTTCAGTCTACTAACGAAGCAATTCAGAAGATTAGATCACGCATGCATACCGCTCAGAGTAGACAGAAGAGTTATGCAGATGTGAGGCGGAAGGACCTTGAGTTTGAGATAGGGGATAAGGTGTTCTTAAAGGTAGCACCTATGAAAGGTGTCTTGCGTTTTGAAAGGAGGGGAAAGTTGAGTCCCCGTTTTGTTGGGCCATTTGAGATCTGGAGCGGATTGGCCCTGTAG

Coding sequence (CDS)

ATGGGTCCTGAGTTAGTTCAGTCTACTAACGAAGCAATTCAGAAGATTAGATCACGCATGCATACCGCTCAGAGTAGACAGAAGAGTTATGCAGATGTGAGGCGGAAGGACCTTGAGTTTGAGATAGGGGATAAGGTGTTCTTAAAGGTAGCACCTATGAAAGGTGTCTTGCGTTTTGAAAGGAGGGGAAAGTTGAGTCCCCGTTTTGTTGGGCCATTTGAGATCTGGAGCGGATTGGCCCTGTAG

Protein sequence

MGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVRRKDLEFEIGDKVFLKVAPMKGVLRFERRGKLSPRFVGPFEIWSGLAL

Homology

[Close]

BLAST of IVF0016200.1 vs. ExPASy TrEMBL
Match: A0A5A7VDP3 (Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold1536G00010 PE=4 SV=1)

HSP 1 Score: 149.1 bits (375), Expect = 8.2e-33
Identity = 75/75 (100.00%), Postives = 75/75 (100.00%), Query Frame = 0


Query: 1   MGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVRRKDLEFEIGDKVFLKVAPMKGVLRFE 60
           MGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVRRKDLEFEIGDKVFLKVAPMKGVLRFE
Sbjct: 438 MGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVRRKDLEFEIGDKVFLKVAPMKGVLRFE 497

Query: 61  RRGKLSPRFVGPFEI 76
           RRGKLSPRFVGPFEI
Sbjct: 498 RRGKLSPRFVGPFEI 512

[Close]

BLAST of IVF0016200.1 vs. ExPASy TrEMBL
Match: A0A5A7SZD6 (Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold56G001250 PE=4 SV=1)

HSP 1 Score: 149.1 bits (375), Expect = 8.2e-33
Identity = 75/75 (100.00%), Postives = 75/75 (100.00%), Query Frame = 0


Query: 1   MGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVRRKDLEFEIGDKVFLKVAPMKGVLRFE 60
           MGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVRRKDLEFEIGDKVFLKVAPMKGVLRFE
Sbjct: 628 MGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVRRKDLEFEIGDKVFLKVAPMKGVLRFE 687

Query: 61  RRGKLSPRFVGPFEI 76
           RRGKLSPRFVGPFEI
Sbjct: 688 RRGKLSPRFVGPFEI 702

[Close]

BLAST of IVF0016200.1 vs. ExPASy TrEMBL
Match: A0A5A7U7V9 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold55G00950 PE=4 SV=1)

HSP 1 Score: 149.1 bits (375), Expect = 8.2e-33
Identity = 75/75 (100.00%), Postives = 75/75 (100.00%), Query Frame = 0


Query: 1    MGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVRRKDLEFEIGDKVFLKVAPMKGVLRFE 60
            MGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVRRKDLEFEIGDKVFLKVAPMKGVLRFE
Sbjct: 1268 MGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVRRKDLEFEIGDKVFLKVAPMKGVLRFE 1327

Query: 61   RRGKLSPRFVGPFEI 76
            RRGKLSPRFVGPFEI
Sbjct: 1328 RRGKLSPRFVGPFEI 1342

[Close]

BLAST of IVF0016200.1 vs. ExPASy TrEMBL
Match: A0A5A7UL25 (Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold17177G00010 PE=4 SV=1)

HSP 1 Score: 149.1 bits (375), Expect = 8.2e-33
Identity = 75/75 (100.00%), Postives = 75/75 (100.00%), Query Frame = 0


Query: 1   MGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVRRKDLEFEIGDKVFLKVAPMKGVLRFE 60
           MGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVRRKDLEFEIGDKVFLKVAPMKGVLRFE
Sbjct: 27  MGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVRRKDLEFEIGDKVFLKVAPMKGVLRFE 86

Query: 61  RRGKLSPRFVGPFEI 76
           RRGKLSPRFVGPFEI
Sbjct: 87  RRGKLSPRFVGPFEI 101

[Close]

BLAST of IVF0016200.1 vs. ExPASy TrEMBL
Match: A0A5A7USM8 (Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold19747G00010 PE=4 SV=1)

HSP 1 Score: 149.1 bits (375), Expect = 8.2e-33
Identity = 75/75 (100.00%), Postives = 75/75 (100.00%), Query Frame = 0


Query: 1   MGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVRRKDLEFEIGDKVFLKVAPMKGVLRFE 60
           MGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVRRKDLEFEIGDKVFLKVAPMKGVLRFE
Sbjct: 27  MGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVRRKDLEFEIGDKVFLKVAPMKGVLRFE 86

Query: 61  RRGKLSPRFVGPFEI 76
           RRGKLSPRFVGPFEI
Sbjct: 87  RRGKLSPRFVGPFEI 101

[Close]

BLAST of IVF0016200.1 vs. NCBI nr
Match: KAA0051723.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 144 bits (364), Expect = 1.38e-42
Identity = 73/75 (97.33%), Postives = 75/75 (100.00%), Query Frame = 0


Query: 1  MGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVRRKDLEFEIGDKVFLKVAPMKGVLRFE 60
          MGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVRRKDLEFE+GDKVFLKVAPM+GVLRFE
Sbjct: 1  MGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVRRKDLEFEVGDKVFLKVAPMRGVLRFE 60

Query: 61 RRGKLSPRFVGPFEI 75
          RRGKLSPRFVGPFEI
Sbjct: 61 RRGKLSPRFVGPFEI 75

[Close]

BLAST of IVF0016200.1 vs. NCBI nr
Match: KAA0055884.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 146 bits (368), Expect = 3.75e-42
Identity = 75/75 (100.00%), Postives = 75/75 (100.00%), Query Frame = 0


Query: 1   MGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVRRKDLEFEIGDKVFLKVAPMKGVLRFE 60
           MGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVRRKDLEFEIGDKVFLKVAPMKGVLRFE
Sbjct: 27  MGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVRRKDLEFEIGDKVFLKVAPMKGVLRFE 86

Query: 61  RRGKLSPRFVGPFEI 75
           RRGKLSPRFVGPFEI
Sbjct: 87  RRGKLSPRFVGPFEI 101

[Close]

BLAST of IVF0016200.1 vs. NCBI nr
Match: KAA0056505.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 146 bits (368), Expect = 3.75e-42
Identity = 75/75 (100.00%), Postives = 75/75 (100.00%), Query Frame = 0


Query: 1   MGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVRRKDLEFEIGDKVFLKVAPMKGVLRFE 60
           MGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVRRKDLEFEIGDKVFLKVAPMKGVLRFE
Sbjct: 27  MGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVRRKDLEFEIGDKVFLKVAPMKGVLRFE 86

Query: 61  RRGKLSPRFVGPFEI 75
           RRGKLSPRFVGPFEI
Sbjct: 87  RRGKLSPRFVGPFEI 101

[Close]

BLAST of IVF0016200.1 vs. NCBI nr
Match: KAA0045469.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 145 bits (365), Expect = 5.01e-42
Identity = 74/75 (98.67%), Postives = 75/75 (100.00%), Query Frame = 0


Query: 1  MGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVRRKDLEFEIGDKVFLKVAPMKGVLRFE 60
          MGPELVQSTNEAIQKIRSR+HTAQSRQKSYADVRRKDLEFEIGDKVFLKVAPMKGVLRFE
Sbjct: 1  MGPELVQSTNEAIQKIRSRLHTAQSRQKSYADVRRKDLEFEIGDKVFLKVAPMKGVLRFE 60

Query: 61 RRGKLSPRFVGPFEI 75
          RRGKLSPRFVGPFEI
Sbjct: 61 RRGKLSPRFVGPFEI 75

[Close]

BLAST of IVF0016200.1 vs. NCBI nr
Match: KAA0065715.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 144 bits (364), Expect = 7.10e-42
Identity = 73/75 (97.33%), Postives = 75/75 (100.00%), Query Frame = 0


Query: 1  MGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVRRKDLEFEIGDKVFLKVAPMKGVLRFE 60
          MGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVRRKDLEFE+GDKVFLKVAPM+GVLRFE
Sbjct: 1  MGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVRRKDLEFEVGDKVFLKVAPMRGVLRFE 60

Query: 61 RRGKLSPRFVGPFEI 75
          RRGKLSPRFVGPFEI
Sbjct: 61 RRGKLSPRFVGPFEI 75

The following BLAST results are available for this feature:

BLAST of IVF0016200.1 vs.


Match Name	E-value	Identity	Description

BLAST of IVF0016200.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7VDP3	8.2e-33	100.00	Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold1536G00010 P...	[more]
A0A5A7SZD6	8.2e-33	100.00	Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold56G001250 PE...	[more]
A0A5A7U7V9	8.2e-33	100.00	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold55...	[more]
A0A5A7UL25	8.2e-33	100.00	Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold17177G00010 ...	[more]
A0A5A7USM8	8.2e-33	100.00	Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold19747G00010 ...	[more]

BLAST of IVF0016200.1 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0051723.1	1.38e-42	97.33	pol protein [Cucumis melo var. makuwa]	[more]
KAA0055884.1	3.75e-42	100.00	pol protein [Cucumis melo var. makuwa]	[more]
KAA0056505.1	3.75e-42	100.00	pol protein [Cucumis melo var. makuwa]	[more]
KAA0045469.1	5.01e-42	98.67	pol protein [Cucumis melo var. makuwa]	[more]
KAA0065715.1	7.10e-42	97.33	pol protein [Cucumis melo var. makuwa]	[more]

BLAST of IVF0016200.1 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
IVF0016200	IVF0016200	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
IVF0016200.1-exon	IVF0016200.1-exon-chr04:6404983..6405228	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
IVF0016200.1-cds	IVF0016200.1-cds-chr04:6404983..6405228	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
IVF0016200.1	IVF0016200.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
molecular_function	GO:0003676	nucleic acid binding