Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCAGGCTTTAAGAGAGATTAGAAGATCAAAAGTTAGTTGCATACTCATCCAGAAGATCAGAAGGATCGGATTTGGTAATATTCAAAACCATTAGTCTTCAGGCATATAACACATATTCTTAACTGGTAGTATTAGCAGCACACAATTGTTGTGATTTTTTCCTTCTCCACTTTTTTTTTTCCTTGAATTATAAGTTGTCTCTGTTTATGTTTGTGCCTAATTTGCCCCAAACTTCTAAAATATTTAAGTGGCCAAAATTTAATTTGATTTAAAATTTGTGTAAATTTGTAATATACTTGGCTTCCCTGGGGATAATACATTCACACAGTAACTCATTTTTGTAGAATTGGTTTTACCTCTTTAATCATATTTATAATCTGATCCACAGTACTCCGGCATCAAATTTCTGTCTTTCTTCAAATTTCTCTTTTGTAAATTGCAGTTCCTTCAAGATTTCGAGTTTTATACTCCACCCGGGATTATCGAAACGATGGGGCATCTGCTTCTGAGTGGAAGGAAGTAACAGTAGGATCTAGCACAATGGTAGTATTTCAGATGGAATATTCTTCTAAAGTTCGAAAAGTCAAGATCTCTTCAATCGTATCTCTATCATTGAGTGCCTGA
mRNA sequence
ATGCAGGCTTTAAGAGAGATTAGAAGATCAAAAGTTAGTTGCATACTCATCCAGAAGATCAGAAGGATCGGATTTGTTCCTTCAAGATTTCGAGTTTTATACTCCACCCGGGATTATCGAAACGATGGGGCATCTGCTTCTGAGTGGAAGGAAGTAACAGTAGGATCTAGCACAATGGTAGTATTTCAGATGGAATATTCTTCTAAAGTTCGAAAAGTCAAGATCTCTTCAATCGTATCTCTATCATTGAGTGCCTGA
Coding sequence (CDS)
ATGCAGGCTTTAAGAGAGATTAGAAGATCAAAAGTTAGTTGCATACTCATCCAGAAGATCAGAAGGATCGGATTTGTTCCTTCAAGATTTCGAGTTTTATACTCCACCCGGGATTATCGAAACGATGGGGCATCTGCTTCTGAGTGGAAGGAAGTAACAGTAGGATCTAGCACAATGGTAGTATTTCAGATGGAATATTCTTCTAAAGTTCGAAAAGTCAAGATCTCTTCAATCGTATCTCTATCATTGAGTGCCTGA
Protein sequence
MQALREIRRSKVSCILIQKIRRIGFVPSRFRVLYSTRDYRNDGASASEWKEVTVGSSTMVVFQMEYSSKVRKVKISSIVSLSLSA
Homology
BLAST of IVF0015603 vs. ExPASy TrEMBL
Match:
A0A0A0LKG9 (NERD domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G915150 PE=4 SV=1)
HSP 1 Score: 156.4 bits (394), Expect = 5.4e-35
Identity = 84/85 (98.82%), Postives = 85/85 (100.00%), Query Frame = 0
Query: 1 MQALREIRRSKVSCILIQKIRRIGFVPSRFRVLYSTRDYRNDGASASEWKEVTVGSSTMV 60
MQALREIRRSKVSCILIQKIRRIGFVPSRFRVLYSTRDYRN+GASASEWKEVTVGSSTMV
Sbjct: 238 MQALREIRRSKVSCILIQKIRRIGFVPSRFRVLYSTRDYRNEGASASEWKEVTVGSSTMV 297
Query: 61 VFQMEYSSKVRKVKISSIVSLSLSA 86
VFQMEYSSKVRKVKISSIVSLSLSA
Sbjct: 298 VFQMEYSSKVRKVKISSIVSLSLSA 322
BLAST of IVF0015603 vs. ExPASy TrEMBL
Match:
A0A6J1DTU9 (uncharacterized protein LOC111023945 OS=Momordica charantia OX=3673 GN=LOC111023945 PE=4 SV=1)
HSP 1 Score: 140.2 bits (352), Expect = 4.0e-30
Identity = 73/85 (85.88%), Postives = 81/85 (95.29%), Query Frame = 0
Query: 1 MQALREIRRSKVSCILIQKIRRIGFVPSRFRVLYSTRDYRNDGASASEWKEVTVGSSTMV 60
MQALR+I+RSKVSCI+IQ++R I FVPSRFRVLYS RDYRNDGASASEWKEVTVGSST+V
Sbjct: 238 MQALRDIKRSKVSCIVIQRMRMIRFVPSRFRVLYSARDYRNDGASASEWKEVTVGSSTVV 297
Query: 61 VFQMEYSSKVRKVKISSIVSLSLSA 86
VFQMEYSSKVRK+KIS+I SLSLSA
Sbjct: 298 VFQMEYSSKVRKIKISTIASLSLSA 322
BLAST of IVF0015603 vs. ExPASy TrEMBL
Match:
A0A6J1K1B0 (uncharacterized protein LOC111490811 OS=Cucurbita maxima OX=3661 GN=LOC111490811 PE=4 SV=1)
HSP 1 Score: 138.3 bits (347), Expect = 1.5e-29
Identity = 71/85 (83.53%), Postives = 81/85 (95.29%), Query Frame = 0
Query: 1 MQALREIRRSKVSCILIQKIRRIGFVPSRFRVLYSTRDYRNDGASASEWKEVTVGSSTMV 60
MQALREI+RSKVSCI+IQK+R IGF PSR RVLYSTR+Y+N+G SASEWKE+T+GS+TMV
Sbjct: 238 MQALREIKRSKVSCIVIQKMRTIGFGPSRLRVLYSTRNYQNEGTSASEWKEITIGSNTMV 297
Query: 61 VFQMEYSSKVRKVKISSIVSLSLSA 86
VFQMEYSSKVRK+KISSIVSLSLSA
Sbjct: 298 VFQMEYSSKVRKIKISSIVSLSLSA 322
BLAST of IVF0015603 vs. ExPASy TrEMBL
Match:
A0A6J1H014 (uncharacterized protein LOC111459180 OS=Cucurbita moschata OX=3662 GN=LOC111459180 PE=4 SV=1)
HSP 1 Score: 138.3 bits (347), Expect = 1.5e-29
Identity = 71/85 (83.53%), Postives = 81/85 (95.29%), Query Frame = 0
Query: 1 MQALREIRRSKVSCILIQKIRRIGFVPSRFRVLYSTRDYRNDGASASEWKEVTVGSSTMV 60
MQALREI+RSKVSCI+IQK+R IGF PSR RVLYSTR+Y+N+G SASEWKE+T+GS+TMV
Sbjct: 238 MQALREIKRSKVSCIVIQKMRTIGFGPSRLRVLYSTRNYQNEGTSASEWKEITIGSNTMV 297
Query: 61 VFQMEYSSKVRKVKISSIVSLSLSA 86
VFQMEYSSKVRK+KISSIVSLSLSA
Sbjct: 298 VFQMEYSSKVRKIKISSIVSLSLSA 322
BLAST of IVF0015603 vs. ExPASy TrEMBL
Match:
A0A314UKK8 (Uncharacterized protein OS=Prunus yedoensis var. nudiflora OX=2094558 GN=Pyn_23999 PE=4 SV=1)
HSP 1 Score: 106.7 bits (265), Expect = 4.9e-20
Identity = 56/85 (65.88%), Postives = 70/85 (82.35%), Query Frame = 0
Query: 1 MQALREIRRSKVSCILIQKIRRIGFVPSRFRVLYSTRDYRNDGASASEWKEVTVGSSTMV 60
++ALR I+RSK+S +++QK +GF PSR +VLYS RDYR+DGASASEWKEV V SST V
Sbjct: 145 VEALRNIKRSKISRLVVQKTSMLGFAPSRLQVLYSPRDYRSDGASASEWKEVNVRSSTEV 204
Query: 61 VFQMEYSSKVRKVKISSIVSLSLSA 86
+FQ E S K+RK K+SSIVS+SLSA
Sbjct: 205 LFQPESSDKLRKFKLSSIVSMSLSA 229
BLAST of IVF0015603 vs. NCBI nr
Match:
XP_004148346.1 (uncharacterized protein LOC101206635 isoform X1 [Cucumis sativus] >KGN60486.1 hypothetical protein Csa_001960 [Cucumis sativus])
HSP 1 Score: 157 bits (396), Expect = 5.65e-45
Identity = 84/85 (98.82%), Postives = 85/85 (100.00%), Query Frame = 0
Query: 1 MQALREIRRSKVSCILIQKIRRIGFVPSRFRVLYSTRDYRNDGASASEWKEVTVGSSTMV 60
MQALREIRRSKVSCILIQKIRRIGFVPSRFRVLYSTRDYRN+GASASEWKEVTVGSSTMV
Sbjct: 238 MQALREIRRSKVSCILIQKIRRIGFVPSRFRVLYSTRDYRNEGASASEWKEVTVGSSTMV 297
Query: 61 VFQMEYSSKVRKVKISSIVSLSLSA 85
VFQMEYSSKVRKVKISSIVSLSLSA
Sbjct: 298 VFQMEYSSKVRKVKISSIVSLSLSA 322
BLAST of IVF0015603 vs. NCBI nr
Match:
XP_022157167.1 (uncharacterized protein LOC111023945 [Momordica charantia])
HSP 1 Score: 140 bits (354), Expect = 1.09e-38
Identity = 73/85 (85.88%), Postives = 81/85 (95.29%), Query Frame = 0
Query: 1 MQALREIRRSKVSCILIQKIRRIGFVPSRFRVLYSTRDYRNDGASASEWKEVTVGSSTMV 60
MQALR+I+RSKVSCI+IQ++R I FVPSRFRVLYS RDYRNDGASASEWKEVTVGSST+V
Sbjct: 238 MQALRDIKRSKVSCIVIQRMRMIRFVPSRFRVLYSARDYRNDGASASEWKEVTVGSSTVV 297
Query: 61 VFQMEYSSKVRKVKISSIVSLSLSA 85
VFQMEYSSKVRK+KIS+I SLSLSA
Sbjct: 298 VFQMEYSSKVRKIKISTIASLSLSA 322
BLAST of IVF0015603 vs. NCBI nr
Match:
XP_022995191.1 (uncharacterized protein LOC111490811 [Cucurbita maxima])
HSP 1 Score: 139 bits (349), Expect = 6.07e-38
Identity = 71/85 (83.53%), Postives = 81/85 (95.29%), Query Frame = 0
Query: 1 MQALREIRRSKVSCILIQKIRRIGFVPSRFRVLYSTRDYRNDGASASEWKEVTVGSSTMV 60
MQALREI+RSKVSCI+IQK+R IGF PSR RVLYSTR+Y+N+G SASEWKE+T+GS+TMV
Sbjct: 238 MQALREIKRSKVSCIVIQKMRTIGFGPSRLRVLYSTRNYQNEGTSASEWKEITIGSNTMV 297
Query: 61 VFQMEYSSKVRKVKISSIVSLSLSA 85
VFQMEYSSKVRK+KISSIVSLSLSA
Sbjct: 298 VFQMEYSSKVRKIKISSIVSLSLSA 322
BLAST of IVF0015603 vs. NCBI nr
Match:
XP_022957721.1 (uncharacterized protein LOC111459180 [Cucurbita moschata])
HSP 1 Score: 139 bits (349), Expect = 6.07e-38
Identity = 71/85 (83.53%), Postives = 81/85 (95.29%), Query Frame = 0
Query: 1 MQALREIRRSKVSCILIQKIRRIGFVPSRFRVLYSTRDYRNDGASASEWKEVTVGSSTMV 60
MQALREI+RSKVSCI+IQK+R IGF PSR RVLYSTR+Y+N+G SASEWKE+T+GS+TMV
Sbjct: 238 MQALREIKRSKVSCIVIQKMRTIGFGPSRLRVLYSTRNYQNEGTSASEWKEITIGSNTMV 297
Query: 61 VFQMEYSSKVRKVKISSIVSLSLSA 85
VFQMEYSSKVRK+KISSIVSLSLSA
Sbjct: 298 VFQMEYSSKVRKIKISSIVSLSLSA 322
BLAST of IVF0015603 vs. NCBI nr
Match:
KAG6605718.1 (hypothetical protein SDJN03_03035, partial [Cucurbita argyrosperma subsp. sororia])
HSP 1 Score: 137 bits (346), Expect = 1.70e-37
Identity = 70/85 (82.35%), Postives = 81/85 (95.29%), Query Frame = 0
Query: 1 MQALREIRRSKVSCILIQKIRRIGFVPSRFRVLYSTRDYRNDGASASEWKEVTVGSSTMV 60
MQALREI+RSKVSCI+IQK+R +GF PSR RVLYSTR+Y+N+G SASEWKE+T+GS+TMV
Sbjct: 238 MQALREIKRSKVSCIVIQKMRTMGFGPSRLRVLYSTRNYQNEGTSASEWKEITIGSNTMV 297
Query: 61 VFQMEYSSKVRKVKISSIVSLSLSA 85
VFQMEYSSKVRK+KISSIVSLSLSA
Sbjct: 298 VFQMEYSSKVRKIKISSIVSLSLSA 322
BLAST of IVF0015603 vs. TAIR 10
Match:
AT1G65020.1 (FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endoplasmic reticulum, plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: NERD (InterPro:IPR011528); Has 69 Blast hits to 69 proteins in 27 species: Archae - 0; Bacteria - 18; Metazoa - 8; Fungi - 0; Plants - 36; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink). )
HSP 1 Score: 88.2 bits (217), Expect = 3.5e-18
Identity = 49/83 (59.04%), Postives = 63/83 (75.90%), Query Frame = 0
Query: 3 ALREIRRSKVSCILIQKIRRIGFVPSRFRVLYSTRDYRNDGASASEWKEVTVGSSTMVVF 62
ALR I+RSKV + IQK G PSR +VLYS RDYR++G+S +E KEVTV SST V+F
Sbjct: 237 ALRNIKRSKVDRVSIQKTSMFGLAPSRLQVLYSYRDYRSEGSSGAESKEVTVRSSTEVLF 296
Query: 63 QMEYSSKVRKVKISSIVSLSLSA 86
Q S+K++K K+SS+VS+SLSA
Sbjct: 297 QPRDSTKMKKFKLSSLVSISLSA 319
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| Match Name | E-value | Identity | Description | |
|---|
| A0A0A0LKG9 | 5.4e-35 | 98.82 | NERD domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G915150 PE=4 S... | [more] |
| A0A6J1DTU9 | 4.0e-30 | 85.88 | uncharacterized protein LOC111023945 OS=Momordica charantia OX=3673 GN=LOC111023... | [more] |
| A0A6J1K1B0 | 1.5e-29 | 83.53 | uncharacterized protein LOC111490811 OS=Cucurbita maxima OX=3661 GN=LOC111490811... | [more] |
| A0A6J1H014 | 1.5e-29 | 83.53 | uncharacterized protein LOC111459180 OS=Cucurbita moschata OX=3662 GN=LOC1114591... | [more] |
| A0A314UKK8 | 4.9e-20 | 65.88 | Uncharacterized protein OS=Prunus yedoensis var. nudiflora OX=2094558 GN=Pyn_239... | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| XP_004148346.1 | 5.65e-45 | 98.82 | uncharacterized protein LOC101206635 isoform X1 [Cucumis sativus] >KGN60486.1 hy... | [more] |
| XP_022157167.1 | 1.09e-38 | 85.88 | uncharacterized protein LOC111023945 [Momordica charantia] | [more] |
| XP_022995191.1 | 6.07e-38 | 83.53 | uncharacterized protein LOC111490811 [Cucurbita maxima] | [more] |
| XP_022957721.1 | 6.07e-38 | 83.53 | uncharacterized protein LOC111459180 [Cucurbita moschata] | [more] |
| KAG6605718.1 | 1.70e-37 | 82.35 | hypothetical protein SDJN03_03035, partial [Cucurbita argyrosperma subsp. sorori... | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| AT1G65020.1 | 3.5e-18 | 59.04 | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknow... | [more] |
