IVF0015603.1 (mRNA) Melon (IVF77) v1

Overview


Name	IVF0015603.1
Type	mRNA
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	NERD domain-containing protein
Location	chr04: 37564 .. 38189 (-)
Sequence length	258
RNA-Seq Expression	IVF0015603.1
Synteny	IVF0015603.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCAGGCTTTAAGAGAGATTAGAAGATCAAAAGTTAGTTGCATACTCATCCAGAAGATCAGAAGGATCGGATTTGGTAATATTCAAAACCATTAGTCTTCAGGCATATAACACATATTCTTAACTGGTAGTATTAGCAGCACACAATTGTTGTGATTTTTTCCTTCTCCACTTTTTTTTTTCCTTGAATTATAAGTTGTCTCTGTTTATGTTTGTGCCTAATTTGCCCCAAACTTCTAAAATATTTAAGTGGCCAAAATTTAATTTGATTTAAAATTTGTGTAAATTTGTAATATACTTGGCTTCCCTGGGGATAATACATTCACACAGTAACTCATTTTTGTAGAATTGGTTTTACCTCTTTAATCATATTTATAATCTGATCCACAGTACTCCGGCATCAAATTTCTGTCTTTCTTCAAATTTCTCTTTTGTAAATTGCAGTTCCTTCAAGATTTCGAGTTTTATACTCCACCCGGGATTATCGAAACGATGGGGCATCTGCTTCTGAGTGGAAGGAAGTAACAGTAGGATCTAGCACAATGGTAGTATTTCAGATGGAATATTCTTCTAAAGTTCGAAAAGTCAAGATCTCTTCAATCGTATCTCTATCATTGAGTGCCTGA

mRNA sequence

ATGCAGGCTTTAAGAGAGATTAGAAGATCAAAAGTTAGTTGCATACTCATCCAGAAGATCAGAAGGATCGGATTTGTTCCTTCAAGATTTCGAGTTTTATACTCCACCCGGGATTATCGAAACGATGGGGCATCTGCTTCTGAGTGGAAGGAAGTAACAGTAGGATCTAGCACAATGGTAGTATTTCAGATGGAATATTCTTCTAAAGTTCGAAAAGTCAAGATCTCTTCAATCGTATCTCTATCATTGAGTGCCTGA

Coding sequence (CDS)

ATGCAGGCTTTAAGAGAGATTAGAAGATCAAAAGTTAGTTGCATACTCATCCAGAAGATCAGAAGGATCGGATTTGTTCCTTCAAGATTTCGAGTTTTATACTCCACCCGGGATTATCGAAACGATGGGGCATCTGCTTCTGAGTGGAAGGAAGTAACAGTAGGATCTAGCACAATGGTAGTATTTCAGATGGAATATTCTTCTAAAGTTCGAAAAGTCAAGATCTCTTCAATCGTATCTCTATCATTGAGTGCCTGA

Protein sequence

MQALREIRRSKVSCILIQKIRRIGFVPSRFRVLYSTRDYRNDGASASEWKEVTVGSSTMVVFQMEYSSKVRKVKISSIVSLSLSA

Homology

[Close]

BLAST of IVF0015603.1 vs. ExPASy TrEMBL
Match: A0A0A0LKG9 (NERD domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G915150 PE=4 SV=1)

HSP 1 Score: 156.4 bits (394), Expect = 5.4e-35
Identity = 84/85 (98.82%), Postives = 85/85 (100.00%), Query Frame = 0


Query: 1   MQALREIRRSKVSCILIQKIRRIGFVPSRFRVLYSTRDYRNDGASASEWKEVTVGSSTMV 60
           MQALREIRRSKVSCILIQKIRRIGFVPSRFRVLYSTRDYRN+GASASEWKEVTVGSSTMV
Sbjct: 238 MQALREIRRSKVSCILIQKIRRIGFVPSRFRVLYSTRDYRNEGASASEWKEVTVGSSTMV 297

Query: 61  VFQMEYSSKVRKVKISSIVSLSLSA 86
           VFQMEYSSKVRKVKISSIVSLSLSA
Sbjct: 298 VFQMEYSSKVRKVKISSIVSLSLSA 322

[Close]

BLAST of IVF0015603.1 vs. ExPASy TrEMBL
Match: A0A6J1DTU9 (uncharacterized protein LOC111023945 OS=Momordica charantia OX=3673 GN=LOC111023945 PE=4 SV=1)

HSP 1 Score: 140.2 bits (352), Expect = 4.0e-30
Identity = 73/85 (85.88%), Postives = 81/85 (95.29%), Query Frame = 0


Query: 1   MQALREIRRSKVSCILIQKIRRIGFVPSRFRVLYSTRDYRNDGASASEWKEVTVGSSTMV 60
           MQALR+I+RSKVSCI+IQ++R I FVPSRFRVLYS RDYRNDGASASEWKEVTVGSST+V
Sbjct: 238 MQALRDIKRSKVSCIVIQRMRMIRFVPSRFRVLYSARDYRNDGASASEWKEVTVGSSTVV 297

Query: 61  VFQMEYSSKVRKVKISSIVSLSLSA 86
           VFQMEYSSKVRK+KIS+I SLSLSA
Sbjct: 298 VFQMEYSSKVRKIKISTIASLSLSA 322

[Close]

BLAST of IVF0015603.1 vs. ExPASy TrEMBL
Match: A0A6J1K1B0 (uncharacterized protein LOC111490811 OS=Cucurbita maxima OX=3661 GN=LOC111490811 PE=4 SV=1)

HSP 1 Score: 138.3 bits (347), Expect = 1.5e-29
Identity = 71/85 (83.53%), Postives = 81/85 (95.29%), Query Frame = 0


Query: 1   MQALREIRRSKVSCILIQKIRRIGFVPSRFRVLYSTRDYRNDGASASEWKEVTVGSSTMV 60
           MQALREI+RSKVSCI+IQK+R IGF PSR RVLYSTR+Y+N+G SASEWKE+T+GS+TMV
Sbjct: 238 MQALREIKRSKVSCIVIQKMRTIGFGPSRLRVLYSTRNYQNEGTSASEWKEITIGSNTMV 297

Query: 61  VFQMEYSSKVRKVKISSIVSLSLSA 86
           VFQMEYSSKVRK+KISSIVSLSLSA
Sbjct: 298 VFQMEYSSKVRKIKISSIVSLSLSA 322

[Close]

BLAST of IVF0015603.1 vs. ExPASy TrEMBL
Match: A0A6J1H014 (uncharacterized protein LOC111459180 OS=Cucurbita moschata OX=3662 GN=LOC111459180 PE=4 SV=1)

HSP 1 Score: 138.3 bits (347), Expect = 1.5e-29
Identity = 71/85 (83.53%), Postives = 81/85 (95.29%), Query Frame = 0


Query: 1   MQALREIRRSKVSCILIQKIRRIGFVPSRFRVLYSTRDYRNDGASASEWKEVTVGSSTMV 60
           MQALREI+RSKVSCI+IQK+R IGF PSR RVLYSTR+Y+N+G SASEWKE+T+GS+TMV
Sbjct: 238 MQALREIKRSKVSCIVIQKMRTIGFGPSRLRVLYSTRNYQNEGTSASEWKEITIGSNTMV 297

Query: 61  VFQMEYSSKVRKVKISSIVSLSLSA 86
           VFQMEYSSKVRK+KISSIVSLSLSA
Sbjct: 298 VFQMEYSSKVRKIKISSIVSLSLSA 322

[Close]

BLAST of IVF0015603.1 vs. ExPASy TrEMBL
Match: A0A314UKK8 (Uncharacterized protein OS=Prunus yedoensis var. nudiflora OX=2094558 GN=Pyn_23999 PE=4 SV=1)

HSP 1 Score: 106.7 bits (265), Expect = 4.9e-20
Identity = 56/85 (65.88%), Postives = 70/85 (82.35%), Query Frame = 0


Query: 1   MQALREIRRSKVSCILIQKIRRIGFVPSRFRVLYSTRDYRNDGASASEWKEVTVGSSTMV 60
           ++ALR I+RSK+S +++QK   +GF PSR +VLYS RDYR+DGASASEWKEV V SST V
Sbjct: 145 VEALRNIKRSKISRLVVQKTSMLGFAPSRLQVLYSPRDYRSDGASASEWKEVNVRSSTEV 204

Query: 61  VFQMEYSSKVRKVKISSIVSLSLSA 86
           +FQ E S K+RK K+SSIVS+SLSA
Sbjct: 205 LFQPESSDKLRKFKLSSIVSMSLSA 229

[Close]

BLAST of IVF0015603.1 vs. NCBI nr
Match: XP_004148346.1 (uncharacterized protein LOC101206635 isoform X1 [Cucumis sativus] >KGN60486.1 hypothetical protein Csa_001960 [Cucumis sativus])

HSP 1 Score: 157 bits (396), Expect = 5.65e-45
Identity = 84/85 (98.82%), Postives = 85/85 (100.00%), Query Frame = 0


Query: 1   MQALREIRRSKVSCILIQKIRRIGFVPSRFRVLYSTRDYRNDGASASEWKEVTVGSSTMV 60
           MQALREIRRSKVSCILIQKIRRIGFVPSRFRVLYSTRDYRN+GASASEWKEVTVGSSTMV
Sbjct: 238 MQALREIRRSKVSCILIQKIRRIGFVPSRFRVLYSTRDYRNEGASASEWKEVTVGSSTMV 297

Query: 61  VFQMEYSSKVRKVKISSIVSLSLSA 85
           VFQMEYSSKVRKVKISSIVSLSLSA
Sbjct: 298 VFQMEYSSKVRKVKISSIVSLSLSA 322

[Close]

BLAST of IVF0015603.1 vs. NCBI nr
Match: XP_022157167.1 (uncharacterized protein LOC111023945 [Momordica charantia])

HSP 1 Score: 140 bits (354), Expect = 1.09e-38
Identity = 73/85 (85.88%), Postives = 81/85 (95.29%), Query Frame = 0


Query: 1   MQALREIRRSKVSCILIQKIRRIGFVPSRFRVLYSTRDYRNDGASASEWKEVTVGSSTMV 60
           MQALR+I+RSKVSCI+IQ++R I FVPSRFRVLYS RDYRNDGASASEWKEVTVGSST+V
Sbjct: 238 MQALRDIKRSKVSCIVIQRMRMIRFVPSRFRVLYSARDYRNDGASASEWKEVTVGSSTVV 297

Query: 61  VFQMEYSSKVRKVKISSIVSLSLSA 85
           VFQMEYSSKVRK+KIS+I SLSLSA
Sbjct: 298 VFQMEYSSKVRKIKISTIASLSLSA 322

[Close]

BLAST of IVF0015603.1 vs. NCBI nr
Match: XP_022995191.1 (uncharacterized protein LOC111490811 [Cucurbita maxima])

HSP 1 Score: 139 bits (349), Expect = 6.07e-38
Identity = 71/85 (83.53%), Postives = 81/85 (95.29%), Query Frame = 0


Query: 1   MQALREIRRSKVSCILIQKIRRIGFVPSRFRVLYSTRDYRNDGASASEWKEVTVGSSTMV 60
           MQALREI+RSKVSCI+IQK+R IGF PSR RVLYSTR+Y+N+G SASEWKE+T+GS+TMV
Sbjct: 238 MQALREIKRSKVSCIVIQKMRTIGFGPSRLRVLYSTRNYQNEGTSASEWKEITIGSNTMV 297

Query: 61  VFQMEYSSKVRKVKISSIVSLSLSA 85
           VFQMEYSSKVRK+KISSIVSLSLSA
Sbjct: 298 VFQMEYSSKVRKIKISSIVSLSLSA 322

[Close]

BLAST of IVF0015603.1 vs. NCBI nr
Match: XP_022957721.1 (uncharacterized protein LOC111459180 [Cucurbita moschata])

HSP 1 Score: 139 bits (349), Expect = 6.07e-38
Identity = 71/85 (83.53%), Postives = 81/85 (95.29%), Query Frame = 0


Query: 1   MQALREIRRSKVSCILIQKIRRIGFVPSRFRVLYSTRDYRNDGASASEWKEVTVGSSTMV 60
           MQALREI+RSKVSCI+IQK+R IGF PSR RVLYSTR+Y+N+G SASEWKE+T+GS+TMV
Sbjct: 238 MQALREIKRSKVSCIVIQKMRTIGFGPSRLRVLYSTRNYQNEGTSASEWKEITIGSNTMV 297

Query: 61  VFQMEYSSKVRKVKISSIVSLSLSA 85
           VFQMEYSSKVRK+KISSIVSLSLSA
Sbjct: 298 VFQMEYSSKVRKIKISSIVSLSLSA 322

[Close]

BLAST of IVF0015603.1 vs. NCBI nr
Match: KAG6605718.1 (hypothetical protein SDJN03_03035, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 137 bits (346), Expect = 1.70e-37
Identity = 70/85 (82.35%), Postives = 81/85 (95.29%), Query Frame = 0


Query: 1   MQALREIRRSKVSCILIQKIRRIGFVPSRFRVLYSTRDYRNDGASASEWKEVTVGSSTMV 60
           MQALREI+RSKVSCI+IQK+R +GF PSR RVLYSTR+Y+N+G SASEWKE+T+GS+TMV
Sbjct: 238 MQALREIKRSKVSCIVIQKMRTMGFGPSRLRVLYSTRNYQNEGTSASEWKEITIGSNTMV 297

Query: 61  VFQMEYSSKVRKVKISSIVSLSLSA 85
           VFQMEYSSKVRK+KISSIVSLSLSA
Sbjct: 298 VFQMEYSSKVRKIKISSIVSLSLSA 322

[Close]

BLAST of IVF0015603.1 vs. TAIR 10
Match: AT1G65020.1 (FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endoplasmic reticulum, plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: NERD (InterPro:IPR011528); Has 69 Blast hits to 69 proteins in 27 species: Archae - 0; Bacteria - 18; Metazoa - 8; Fungi - 0; Plants - 36; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink). )

HSP 1 Score: 88.2 bits (217), Expect = 3.5e-18
Identity = 49/83 (59.04%), Postives = 63/83 (75.90%), Query Frame = 0


Query: 3   ALREIRRSKVSCILIQKIRRIGFVPSRFRVLYSTRDYRNDGASASEWKEVTVGSSTMVVF 62
           ALR I+RSKV  + IQK    G  PSR +VLYS RDYR++G+S +E KEVTV SST V+F
Sbjct: 237 ALRNIKRSKVDRVSIQKTSMFGLAPSRLQVLYSYRDYRSEGSSGAESKEVTVRSSTEVLF 296

Query: 63  QMEYSSKVRKVKISSIVSLSLSA 86
           Q   S+K++K K+SS+VS+SLSA
Sbjct: 297 QPRDSTKMKKFKLSSLVSISLSA 319

The following BLAST results are available for this feature:

BLAST of IVF0015603.1 vs.


Match Name	E-value	Identity	Description

BLAST of IVF0015603.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LKG9	5.4e-35	98.82	NERD domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G915150 PE=4 S...	[more]
A0A6J1DTU9	4.0e-30	85.88	uncharacterized protein LOC111023945 OS=Momordica charantia OX=3673 GN=LOC111023...	[more]
A0A6J1K1B0	1.5e-29	83.53	uncharacterized protein LOC111490811 OS=Cucurbita maxima OX=3661 GN=LOC111490811...	[more]
A0A6J1H014	1.5e-29	83.53	uncharacterized protein LOC111459180 OS=Cucurbita moschata OX=3662 GN=LOC1114591...	[more]
A0A314UKK8	4.9e-20	65.88	Uncharacterized protein OS=Prunus yedoensis var. nudiflora OX=2094558 GN=Pyn_239...	[more]

BLAST of IVF0015603.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004148346.1	5.65e-45	98.82	uncharacterized protein LOC101206635 isoform X1 [Cucumis sativus] >KGN60486.1 hy...	[more]
XP_022157167.1	1.09e-38	85.88	uncharacterized protein LOC111023945 [Momordica charantia]	[more]
XP_022995191.1	6.07e-38	83.53	uncharacterized protein LOC111490811 [Cucurbita maxima]	[more]
XP_022957721.1	6.07e-38	83.53	uncharacterized protein LOC111459180 [Cucurbita moschata]	[more]
KAG6605718.1	1.70e-37	82.35	hypothetical protein SDJN03_03035, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of IVF0015603.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G65020.1	3.5e-18	59.04	FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknow...	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR35287	SI:ZFOS-911D5.4	coord: 3..85
None	No IPR available	PANTHER	PTHR35287:SF2	BNAA02G11880D PROTEIN	coord: 3..85

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
IVF0015603	IVF0015603	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
IVF0015603.1-exon	IVF0015603.1-exon-chr04:37564..37745	exon
IVF0015603.1-exon	IVF0015603.1-exon-chr04:38114..38189	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
IVF0015603.1-cds	IVF0015603.1-cds-chr04:37564..37745	CDS
IVF0015603.1-cds	IVF0015603.1-cds-chr04:38114..38189	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
IVF0015603.1	IVF0015603.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0005840	ribosome