Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATTGCTGAACATGCACCTGGTGCTCTTGAGACTCATATGTCTTATATGGATTCCGATGATCTTGATGATGTTCCTTTGACCCGTTTGTTGAAGAAGACTTCTATTACTAATGTTGTAGTTGAAAGGCCTATAGACCCTCTTGTATCCAATCATTCGCAGGAAAGCTCGTCCACTGAAGGTGTGTTTGTTCCTACCTCCGGTCTTCAGCATATTTCTACTGTTGAATCAGGTCCATCACTTTATTCCTCCCTAGTTCGGTCTCCTACTCCAAATCCTACTTCCTCTAGTCAGAATAATGACCCTACATCTCCACCTGCTGATGAAACCGTTGCACCTGAGGAAGGGATTGATGTTCATAATGATGATGATGAGCTTGACCCTGTCATTCTTGAAGTTAATACTGGTGACATCCCTTTTGATGTTAATGTTGATAATACCTCGGCTACTCCAACTGAGTCTTCTGCATTTTCTGAGGAATCTCGACGTGTAAAGAAGAAGTCGTAG
mRNA sequence
ATGATTGCTGAACATGCACCTGGTGCTCTTGAGACTCATATGTCTTATATGGATTCCGATGATCTTGATGATGTTCCTTTGACCCGTTTGTTGAAGAAGACTTCTATTACTAATGTTGTAGTTGAAAGGCCTATAGACCCTCTTGTATCCAATCATTCGCAGGAAAGCTCGTCCACTGAAGGTGTGTTTGTTCCTACCTCCGGTCTTCAGCATATTTCTACTGTTGAATCAGGTCCATCACTTTATTCCTCCCTAGTTCGGTCTCCTACTCCAAATCCTACTTCCTCTAGTCAGAATAATGACCCTACATCTCCACCTGCTGATGAAACCGTTGCACCTGAGGAAGGGATTGATGTTCATAATGATGATGATGAGCTTGACCCTGTCATTCTTGAAGTTAATACTGGTGACATCCCTTTTGATGTTAATGTTGATAATACCTCGGCTACTCCAACTGAGTCTTCTGCATTTTCTGAGGAATCTCGACGTGTAAAGAAGAAGTCGTAG
Coding sequence (CDS)
ATGATTGCTGAACATGCACCTGGTGCTCTTGAGACTCATATGTCTTATATGGATTCCGATGATCTTGATGATGTTCCTTTGACCCGTTTGTTGAAGAAGACTTCTATTACTAATGTTGTAGTTGAAAGGCCTATAGACCCTCTTGTATCCAATCATTCGCAGGAAAGCTCGTCCACTGAAGGTGTGTTTGTTCCTACCTCCGGTCTTCAGCATATTTCTACTGTTGAATCAGGTCCATCACTTTATTCCTCCCTAGTTCGGTCTCCTACTCCAAATCCTACTTCCTCTAGTCAGAATAATGACCCTACATCTCCACCTGCTGATGAAACCGTTGCACCTGAGGAAGGGATTGATGTTCATAATGATGATGATGAGCTTGACCCTGTCATTCTTGAAGTTAATACTGGTGACATCCCTTTTGATGTTAATGTTGATAATACCTCGGCTACTCCAACTGAGTCTTCTGCATTTTCTGAGGAATCTCGACGTGTAAAGAAGAAGTCGTAG
Protein sequence
MIAEHAPGALETHMSYMDSDDLDDVPLTRLLKKTSITNVVVERPIDPLVSNHSQESSSTEGVFVPTSGLQHISTVESGPSLYSSLVRSPTPNPTSSSQNNDPTSPPADETVAPEEGIDVHNDDDELDPVILEVNTGDIPFDVNVDNTSATPTESSAFSEESRRVKKKS
Homology
BLAST of IVF0015311 vs. ExPASy TrEMBL
Match:
A0A5A7UCZ0 (Putative gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold441G00190 PE=4 SV=1)
HSP 1 Score: 319.3 bits (817), Expect = 9.5e-84
Identity = 168/168 (100.00%), Postives = 168/168 (100.00%), Query Frame = 0
Query: 1 MIAEHAPGALETHMSYMDSDDLDDVPLTRLLKKTSITNVVVERPIDPLVSNHSQESSSTE 60
MIAEHAPGALETHMSYMDSDDLDDVPLTRLLKKTSITNVVVERPIDPLVSNHSQESSSTE
Sbjct: 391 MIAEHAPGALETHMSYMDSDDLDDVPLTRLLKKTSITNVVVERPIDPLVSNHSQESSSTE 450
Query: 61 GVFVPTSGLQHISTVESGPSLYSSLVRSPTPNPTSSSQNNDPTSPPADETVAPEEGIDVH 120
GVFVPTSGLQHISTVESGPSLYSSLVRSPTPNPTSSSQNNDPTSPPADETVAPEEGIDVH
Sbjct: 451 GVFVPTSGLQHISTVESGPSLYSSLVRSPTPNPTSSSQNNDPTSPPADETVAPEEGIDVH 510
Query: 121 NDDDELDPVILEVNTGDIPFDVNVDNTSATPTESSAFSEESRRVKKKS 169
NDDDELDPVILEVNTGDIPFDVNVDNTSATPTESSAFSEESRRVKKKS
Sbjct: 511 NDDDELDPVILEVNTGDIPFDVNVDNTSATPTESSAFSEESRRVKKKS 558
BLAST of IVF0015311 vs. ExPASy TrEMBL
Match:
A0A5A7U5S6 (Envelope-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1737G001470 PE=4 SV=1)
HSP 1 Score: 225.3 bits (573), Expect = 1.9e-55
Identity = 123/166 (74.10%), Postives = 133/166 (80.12%), Query Frame = 0
Query: 2 IAEHAPGALETHMSYMDSDDLDDVPLTRLLKKTSITNVVVERPIDPLVSNHSQESSSTEG 61
IA++ PGALE HMS MDS+DLDDVPL RLLKKTS+ +V VERPIDP VS+H QESSSTEG
Sbjct: 77 IAKYPPGALEAHMSNMDSNDLDDVPLARLLKKTSVPDVAVERPIDPPVSDHFQESSSTEG 136
Query: 62 VFVPTSGLQHISTVESGPSLYSSLVRSPTPNPTSSSQNNDPTSPPADETVAPEEGIDVHN 121
V VPT GLQH T+E GPS YSSLVRSP PN TSS NND S ADE APE GIDVHN
Sbjct: 137 VLVPTPGLQHTFTLEPGPSFYSSLVRSPAPNTTSSGLNNDHASQSADEIAAPEGGIDVHN 196
Query: 122 DDDELDPVILEVNTGDIPFDVNVDNTSATPTESSAFSEESRRVKKK 168
+DDELDPVI EVNTG+IP DV+VDNTSA PTES F EESR KKK
Sbjct: 197 NDDELDPVIPEVNTGEIPVDVDVDNTSAAPTESPTFPEESRPTKKK 242
BLAST of IVF0015311 vs. ExPASy TrEMBL
Match:
A0A5A7UZP9 (Envelope-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold18G00990 PE=4 SV=1)
HSP 1 Score: 208.8 bits (530), Expect = 1.8e-50
Identity = 117/162 (72.22%), Postives = 129/162 (79.63%), Query Frame = 0
Query: 2 IAEHAPGALETHMSYMDSDDLDDVPLTRLLKKTSITNVVVERPIDPLVSNHSQESSSTEG 61
IAEH PGA THM MDSDDLDDVPL RLLKKTSI +V VERPIDP VS+HS+E+SS EG
Sbjct: 77 IAEHDPGAPATHMFDMDSDDLDDVPLARLLKKTSIPDVAVERPIDPHVSDHSKENSSPEG 136
Query: 62 VFVPTSGLQHISTVESGPSLYSSLVRSPTPNPTSSSQNNDPTSPPADETVAPEEGIDVHN 121
VFVPT LQHISTVE G SLYSS V+S TPN TSS NND SPP DET AP+ G DVHN
Sbjct: 137 VFVPTPNLQHISTVEPGSSLYSSPVQSSTPNTTSSGLNNDTASPPVDETAAPKGGTDVHN 196
Query: 122 DDDELDPVILEVNTGDIPFDVNVD--NTSATPTESSAFSEES 162
DDDEL+P++ EVNTG+I DV+VD NTSAT T+S AF EES
Sbjct: 197 DDDELEPIVPEVNTGEILVDVDVDVNNTSATSTKSPAFPEES 238
BLAST of IVF0015311 vs. ExPASy TrEMBL
Match:
A0A5A7UPS8 (Envelope-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold314G00420 PE=4 SV=1)
HSP 1 Score: 183.3 bits (464), Expect = 8.1e-43
Identity = 103/165 (62.42%), Postives = 122/165 (73.94%), Query Frame = 0
Query: 4 EHAPGALETHMSYMDSDDLDDVPLTRLLKKTSITNVVVERPIDPLVSNHSQESSSTEGVF 63
EHAP ALETHMS +DSD+L+DVPL ++KKT +++V ERPIDPLVS HSQESSSTEGVF
Sbjct: 48 EHAPSALETHMSDIDSDELNDVPLACMIKKTFVSDVTAERPIDPLVSVHSQESSSTEGVF 107
Query: 64 VPTSGLQHISTVESGPSLYSSLVRSPTPNPTSSSQNNDPTSPPADETVAPEEGIDVHNDD 123
VPTS LQH S +E G S YSS VRSP PN TS NNDP S PADE+ A EE +VHND+
Sbjct: 108 VPTSSLQHTSNIELGSSPYSSPVRSPVPNTTSFGPNNDPASTPADESAATEERTNVHNDE 167
Query: 124 DELDPVILEVNTGDIPFDVNVDNTSATPTESSAFSEESRRVKKKS 169
++L+P + +TG+IP D DN P E+ AF EESR KKKS
Sbjct: 168 NKLEPANPDNHTGEIPID--ADNNLVGPIETHAFPEESRPTKKKS 210
BLAST of IVF0015311 vs. ExPASy TrEMBL
Match:
A0A5D3C2V7 (Envelope-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold68G00920 PE=4 SV=1)
HSP 1 Score: 172.2 bits (435), Expect = 1.9e-39
Identity = 96/130 (73.85%), Postives = 105/130 (80.77%), Query Frame = 0
Query: 38 NVVVERPIDPLVSNHSQESSSTEGVFVPTSGLQHISTVESGPSLYSSLVRSPTPNPTSSS 97
+V VERPID VS+H+QE+SSTEGVFVPT GLQH ST E GPSLYSSLV+SPTP+ TSSS
Sbjct: 35 HVAVERPIDAPVSDHAQENSSTEGVFVPTPGLQHTSTFEPGPSLYSSLVQSPTPHSTSSS 94
Query: 98 QNNDPTSPPADETVAPEEGIDVHNDDDELDPVILEVNTGDIPFDVNVDNTSATPTESSAF 157
NDP SPPADET A E G DVHNDDDELDPVI +VNT +IP DV+VDNT A PTES AF
Sbjct: 95 LKNDPASPPADETAALERGTDVHNDDDELDPVIPKVNTCEIPVDVDVDNTLAAPTESPAF 154
Query: 158 SEESRRVKKK 168
E SR KKK
Sbjct: 155 PEISRPAKKK 164
BLAST of IVF0015311 vs. NCBI nr
Match:
KAA0053124.1 (putative gag-pol polyprotein [Cucumis melo var. makuwa] >TYJ95499.1 putative gag-pol polyprotein [Cucumis melo var. makuwa])
HSP 1 Score: 320 bits (819), Expect = 2.28e-104
Identity = 168/168 (100.00%), Postives = 168/168 (100.00%), Query Frame = 0
Query: 1 MIAEHAPGALETHMSYMDSDDLDDVPLTRLLKKTSITNVVVERPIDPLVSNHSQESSSTE 60
MIAEHAPGALETHMSYMDSDDLDDVPLTRLLKKTSITNVVVERPIDPLVSNHSQESSSTE
Sbjct: 391 MIAEHAPGALETHMSYMDSDDLDDVPLTRLLKKTSITNVVVERPIDPLVSNHSQESSSTE 450
Query: 61 GVFVPTSGLQHISTVESGPSLYSSLVRSPTPNPTSSSQNNDPTSPPADETVAPEEGIDVH 120
GVFVPTSGLQHISTVESGPSLYSSLVRSPTPNPTSSSQNNDPTSPPADETVAPEEGIDVH
Sbjct: 451 GVFVPTSGLQHISTVESGPSLYSSLVRSPTPNPTSSSQNNDPTSPPADETVAPEEGIDVH 510
Query: 121 NDDDELDPVILEVNTGDIPFDVNVDNTSATPTESSAFSEESRRVKKKS 168
NDDDELDPVILEVNTGDIPFDVNVDNTSATPTESSAFSEESRRVKKKS
Sbjct: 511 NDDDELDPVILEVNTGDIPFDVNVDNTSATPTESSAFSEESRRVKKKS 558
BLAST of IVF0015311 vs. NCBI nr
Match:
KAA0050594.1 (envelope-like protein [Cucumis melo var. makuwa] >TYK07846.1 envelope-like protein [Cucumis melo var. makuwa])
HSP 1 Score: 226 bits (575), Expect = 1.42e-71
Identity = 123/166 (74.10%), Postives = 133/166 (80.12%), Query Frame = 0
Query: 2 IAEHAPGALETHMSYMDSDDLDDVPLTRLLKKTSITNVVVERPIDPLVSNHSQESSSTEG 61
IA++ PGALE HMS MDS+DLDDVPL RLLKKTS+ +V VERPIDP VS+H QESSSTEG
Sbjct: 77 IAKYPPGALEAHMSNMDSNDLDDVPLARLLKKTSVPDVAVERPIDPPVSDHFQESSSTEG 136
Query: 62 VFVPTSGLQHISTVESGPSLYSSLVRSPTPNPTSSSQNNDPTSPPADETVAPEEGIDVHN 121
V VPT GLQH T+E GPS YSSLVRSP PN TSS NND S ADE APE GIDVHN
Sbjct: 137 VLVPTPGLQHTFTLEPGPSFYSSLVRSPAPNTTSSGLNNDHASQSADEIAAPEGGIDVHN 196
Query: 122 DDDELDPVILEVNTGDIPFDVNVDNTSATPTESSAFSEESRRVKKK 167
+DDELDPVI EVNTG+IP DV+VDNTSA PTES F EESR KKK
Sbjct: 197 NDDELDPVIPEVNTGEIPVDVDVDNTSAAPTESPTFPEESRPTKKK 242
BLAST of IVF0015311 vs. NCBI nr
Match:
KAA0060580.1 (envelope-like protein [Cucumis melo var. makuwa] >TYK02291.1 envelope-like protein [Cucumis melo var. makuwa])
HSP 1 Score: 209 bits (531), Expect = 5.95e-65
Identity = 117/162 (72.22%), Postives = 129/162 (79.63%), Query Frame = 0
Query: 2 IAEHAPGALETHMSYMDSDDLDDVPLTRLLKKTSITNVVVERPIDPLVSNHSQESSSTEG 61
IAEH PGA THM MDSDDLDDVPL RLLKKTSI +V VERPIDP VS+HS+E+SS EG
Sbjct: 77 IAEHDPGAPATHMFDMDSDDLDDVPLARLLKKTSIPDVAVERPIDPHVSDHSKENSSPEG 136
Query: 62 VFVPTSGLQHISTVESGPSLYSSLVRSPTPNPTSSSQNNDPTSPPADETVAPEEGIDVHN 121
VFVPT LQHISTVE G SLYSS V+S TPN TSS NND SPP DET AP+ G DVHN
Sbjct: 137 VFVPTPNLQHISTVEPGSSLYSSPVQSSTPNTTSSGLNNDTASPPVDETAAPKGGTDVHN 196
Query: 122 DDDELDPVILEVNTGDIPFDVNVD--NTSATPTESSAFSEES 161
DDDEL+P++ EVNTG+I DV+VD NTSAT T+S AF EES
Sbjct: 197 DDDELEPIVPEVNTGEILVDVDVDVNNTSATSTKSPAFPEES 238
BLAST of IVF0015311 vs. NCBI nr
Match:
KAA0055469.1 (envelope-like protein [Cucumis melo var. makuwa] >TYK08951.1 envelope-like protein [Cucumis melo var. makuwa])
HSP 1 Score: 184 bits (467), Expect = 1.30e-55
Identity = 103/165 (62.42%), Postives = 122/165 (73.94%), Query Frame = 0
Query: 4 EHAPGALETHMSYMDSDDLDDVPLTRLLKKTSITNVVVERPIDPLVSNHSQESSSTEGVF 63
EHAP ALETHMS +DSD+L+DVPL ++KKT +++V ERPIDPLVS HSQESSSTEGVF
Sbjct: 48 EHAPSALETHMSDIDSDELNDVPLACMIKKTFVSDVTAERPIDPLVSVHSQESSSTEGVF 107
Query: 64 VPTSGLQHISTVESGPSLYSSLVRSPTPNPTSSSQNNDPTSPPADETVAPEEGIDVHNDD 123
VPTS LQH S +E G S YSS VRSP PN TS NNDP S PADE+ A EE +VHND+
Sbjct: 108 VPTSSLQHTSNIELGSSPYSSPVRSPVPNTTSFGPNNDPASTPADESAATEERTNVHNDE 167
Query: 124 DELDPVILEVNTGDIPFDVNVDNTSATPTESSAFSEESRRVKKKS 168
++L+P + +TG+IP D DN P E+ AF EESR KKKS
Sbjct: 168 NKLEPANPDNHTGEIPIDA--DNNLVGPIETHAFPEESRPTKKKS 210
BLAST of IVF0015311 vs. NCBI nr
Match:
TYK04776.1 (envelope-like protein [Cucumis melo var. makuwa])
HSP 1 Score: 172 bits (437), Expect = 1.21e-51
Identity = 96/130 (73.85%), Postives = 105/130 (80.77%), Query Frame = 0
Query: 38 NVVVERPIDPLVSNHSQESSSTEGVFVPTSGLQHISTVESGPSLYSSLVRSPTPNPTSSS 97
+V VERPID VS+H+QE+SSTEGVFVPT GLQH ST E GPSLYSSLV+SPTP+ TSSS
Sbjct: 35 HVAVERPIDAPVSDHAQENSSTEGVFVPTPGLQHTSTFEPGPSLYSSLVQSPTPHSTSSS 94
Query: 98 QNNDPTSPPADETVAPEEGIDVHNDDDELDPVILEVNTGDIPFDVNVDNTSATPTESSAF 157
NDP SPPADET A E G DVHNDDDELDPVI +VNT +IP DV+VDNT A PTES AF
Sbjct: 95 LKNDPASPPADETAALERGTDVHNDDDELDPVIPKVNTCEIPVDVDVDNTLAAPTESPAF 154
Query: 158 SEESRRVKKK 167
E SR KKK
Sbjct: 155 PEISRPAKKK 164
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| Match Name | E-value | Identity | Description | |
|---|
| A0A5A7UCZ0 | 9.5e-84 | 100.00 | Putative gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sca... | [more] |
| A0A5A7U5S6 | 1.9e-55 | 74.10 | Envelope-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold17... | [more] |
| A0A5A7UZP9 | 1.8e-50 | 72.22 | Envelope-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold18... | [more] |
| A0A5A7UPS8 | 8.1e-43 | 62.42 | Envelope-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold31... | [more] |
| A0A5D3C2V7 | 1.9e-39 | 73.85 | Envelope-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold68... | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| KAA0053124.1 | 2.28e-104 | 100.00 | putative gag-pol polyprotein [Cucumis melo var. makuwa] >TYJ95499.1 putative gag... | [more] |
| KAA0050594.1 | 1.42e-71 | 74.10 | envelope-like protein [Cucumis melo var. makuwa] >TYK07846.1 envelope-like prote... | [more] |
| KAA0060580.1 | 5.95e-65 | 72.22 | envelope-like protein [Cucumis melo var. makuwa] >TYK02291.1 envelope-like prote... | [more] |
| KAA0055469.1 | 1.30e-55 | 62.42 | envelope-like protein [Cucumis melo var. makuwa] >TYK08951.1 envelope-like prote... | [more] |
| TYK04776.1 | 1.21e-51 | 73.85 | envelope-like protein [Cucumis melo var. makuwa] | [more] |
| Match Name | E-value | Identity | Description | |
|---|
