IVF0015311.1 (mRNA) Melon (IVF77) v1

Overview


Name	IVF0015311.1
Type	mRNA
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	Envelope-like protein
Location	chr04: 10665664 .. 10666170 (-)
Sequence length	507
RNA-Seq Expression	IVF0015311.1
Synteny	IVF0015311.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATTGCTGAACATGCACCTGGTGCTCTTGAGACTCATATGTCTTATATGGATTCCGATGATCTTGATGATGTTCCTTTGACCCGTTTGTTGAAGAAGACTTCTATTACTAATGTTGTAGTTGAAAGGCCTATAGACCCTCTTGTATCCAATCATTCGCAGGAAAGCTCGTCCACTGAAGGTGTGTTTGTTCCTACCTCCGGTCTTCAGCATATTTCTACTGTTGAATCAGGTCCATCACTTTATTCCTCCCTAGTTCGGTCTCCTACTCCAAATCCTACTTCCTCTAGTCAGAATAATGACCCTACATCTCCACCTGCTGATGAAACCGTTGCACCTGAGGAAGGGATTGATGTTCATAATGATGATGATGAGCTTGACCCTGTCATTCTTGAAGTTAATACTGGTGACATCCCTTTTGATGTTAATGTTGATAATACCTCGGCTACTCCAACTGAGTCTTCTGCATTTTCTGAGGAATCTCGACGTGTAAAGAAGAAGTCGTAG

mRNA sequence

ATGATTGCTGAACATGCACCTGGTGCTCTTGAGACTCATATGTCTTATATGGATTCCGATGATCTTGATGATGTTCCTTTGACCCGTTTGTTGAAGAAGACTTCTATTACTAATGTTGTAGTTGAAAGGCCTATAGACCCTCTTGTATCCAATCATTCGCAGGAAAGCTCGTCCACTGAAGGTGTGTTTGTTCCTACCTCCGGTCTTCAGCATATTTCTACTGTTGAATCAGGTCCATCACTTTATTCCTCCCTAGTTCGGTCTCCTACTCCAAATCCTACTTCCTCTAGTCAGAATAATGACCCTACATCTCCACCTGCTGATGAAACCGTTGCACCTGAGGAAGGGATTGATGTTCATAATGATGATGATGAGCTTGACCCTGTCATTCTTGAAGTTAATACTGGTGACATCCCTTTTGATGTTAATGTTGATAATACCTCGGCTACTCCAACTGAGTCTTCTGCATTTTCTGAGGAATCTCGACGTGTAAAGAAGAAGTCGTAG

Coding sequence (CDS)

ATGATTGCTGAACATGCACCTGGTGCTCTTGAGACTCATATGTCTTATATGGATTCCGATGATCTTGATGATGTTCCTTTGACCCGTTTGTTGAAGAAGACTTCTATTACTAATGTTGTAGTTGAAAGGCCTATAGACCCTCTTGTATCCAATCATTCGCAGGAAAGCTCGTCCACTGAAGGTGTGTTTGTTCCTACCTCCGGTCTTCAGCATATTTCTACTGTTGAATCAGGTCCATCACTTTATTCCTCCCTAGTTCGGTCTCCTACTCCAAATCCTACTTCCTCTAGTCAGAATAATGACCCTACATCTCCACCTGCTGATGAAACCGTTGCACCTGAGGAAGGGATTGATGTTCATAATGATGATGATGAGCTTGACCCTGTCATTCTTGAAGTTAATACTGGTGACATCCCTTTTGATGTTAATGTTGATAATACCTCGGCTACTCCAACTGAGTCTTCTGCATTTTCTGAGGAATCTCGACGTGTAAAGAAGAAGTCGTAG

Protein sequence

MIAEHAPGALETHMSYMDSDDLDDVPLTRLLKKTSITNVVVERPIDPLVSNHSQESSSTEGVFVPTSGLQHISTVESGPSLYSSLVRSPTPNPTSSSQNNDPTSPPADETVAPEEGIDVHNDDDELDPVILEVNTGDIPFDVNVDNTSATPTESSAFSEESRRVKKKS

Homology

[Close]

BLAST of IVF0015311.1 vs. ExPASy TrEMBL
Match: A0A5A7UCZ0 (Putative gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold441G00190 PE=4 SV=1)

HSP 1 Score: 319.3 bits (817), Expect = 9.5e-84
Identity = 168/168 (100.00%), Postives = 168/168 (100.00%), Query Frame = 0


Query: 1   MIAEHAPGALETHMSYMDSDDLDDVPLTRLLKKTSITNVVVERPIDPLVSNHSQESSSTE 60
           MIAEHAPGALETHMSYMDSDDLDDVPLTRLLKKTSITNVVVERPIDPLVSNHSQESSSTE
Sbjct: 391 MIAEHAPGALETHMSYMDSDDLDDVPLTRLLKKTSITNVVVERPIDPLVSNHSQESSSTE 450

Query: 61  GVFVPTSGLQHISTVESGPSLYSSLVRSPTPNPTSSSQNNDPTSPPADETVAPEEGIDVH 120
           GVFVPTSGLQHISTVESGPSLYSSLVRSPTPNPTSSSQNNDPTSPPADETVAPEEGIDVH
Sbjct: 451 GVFVPTSGLQHISTVESGPSLYSSLVRSPTPNPTSSSQNNDPTSPPADETVAPEEGIDVH 510

Query: 121 NDDDELDPVILEVNTGDIPFDVNVDNTSATPTESSAFSEESRRVKKKS 169
           NDDDELDPVILEVNTGDIPFDVNVDNTSATPTESSAFSEESRRVKKKS
Sbjct: 511 NDDDELDPVILEVNTGDIPFDVNVDNTSATPTESSAFSEESRRVKKKS 558

[Close]

BLAST of IVF0015311.1 vs. ExPASy TrEMBL
Match: A0A5A7U5S6 (Envelope-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1737G001470 PE=4 SV=1)

HSP 1 Score: 225.3 bits (573), Expect = 1.9e-55
Identity = 123/166 (74.10%), Postives = 133/166 (80.12%), Query Frame = 0


Query: 2   IAEHAPGALETHMSYMDSDDLDDVPLTRLLKKTSITNVVVERPIDPLVSNHSQESSSTEG 61
           IA++ PGALE HMS MDS+DLDDVPL RLLKKTS+ +V VERPIDP VS+H QESSSTEG
Sbjct: 77  IAKYPPGALEAHMSNMDSNDLDDVPLARLLKKTSVPDVAVERPIDPPVSDHFQESSSTEG 136

Query: 62  VFVPTSGLQHISTVESGPSLYSSLVRSPTPNPTSSSQNNDPTSPPADETVAPEEGIDVHN 121
           V VPT GLQH  T+E GPS YSSLVRSP PN TSS  NND  S  ADE  APE GIDVHN
Sbjct: 137 VLVPTPGLQHTFTLEPGPSFYSSLVRSPAPNTTSSGLNNDHASQSADEIAAPEGGIDVHN 196

Query: 122 DDDELDPVILEVNTGDIPFDVNVDNTSATPTESSAFSEESRRVKKK 168
           +DDELDPVI EVNTG+IP DV+VDNTSA PTES  F EESR  KKK
Sbjct: 197 NDDELDPVIPEVNTGEIPVDVDVDNTSAAPTESPTFPEESRPTKKK 242

[Close]

BLAST of IVF0015311.1 vs. ExPASy TrEMBL
Match: A0A5A7UZP9 (Envelope-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold18G00990 PE=4 SV=1)

HSP 1 Score: 208.8 bits (530), Expect = 1.8e-50
Identity = 117/162 (72.22%), Postives = 129/162 (79.63%), Query Frame = 0


Query: 2   IAEHAPGALETHMSYMDSDDLDDVPLTRLLKKTSITNVVVERPIDPLVSNHSQESSSTEG 61
           IAEH PGA  THM  MDSDDLDDVPL RLLKKTSI +V VERPIDP VS+HS+E+SS EG
Sbjct: 77  IAEHDPGAPATHMFDMDSDDLDDVPLARLLKKTSIPDVAVERPIDPHVSDHSKENSSPEG 136

Query: 62  VFVPTSGLQHISTVESGPSLYSSLVRSPTPNPTSSSQNNDPTSPPADETVAPEEGIDVHN 121
           VFVPT  LQHISTVE G SLYSS V+S TPN TSS  NND  SPP DET AP+ G DVHN
Sbjct: 137 VFVPTPNLQHISTVEPGSSLYSSPVQSSTPNTTSSGLNNDTASPPVDETAAPKGGTDVHN 196

Query: 122 DDDELDPVILEVNTGDIPFDVNVD--NTSATPTESSAFSEES 162
           DDDEL+P++ EVNTG+I  DV+VD  NTSAT T+S AF EES
Sbjct: 197 DDDELEPIVPEVNTGEILVDVDVDVNNTSATSTKSPAFPEES 238

[Close]

BLAST of IVF0015311.1 vs. ExPASy TrEMBL
Match: A0A5A7UPS8 (Envelope-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold314G00420 PE=4 SV=1)

HSP 1 Score: 183.3 bits (464), Expect = 8.1e-43
Identity = 103/165 (62.42%), Postives = 122/165 (73.94%), Query Frame = 0


Query: 4   EHAPGALETHMSYMDSDDLDDVPLTRLLKKTSITNVVVERPIDPLVSNHSQESSSTEGVF 63
           EHAP ALETHMS +DSD+L+DVPL  ++KKT +++V  ERPIDPLVS HSQESSSTEGVF
Sbjct: 48  EHAPSALETHMSDIDSDELNDVPLACMIKKTFVSDVTAERPIDPLVSVHSQESSSTEGVF 107

Query: 64  VPTSGLQHISTVESGPSLYSSLVRSPTPNPTSSSQNNDPTSPPADETVAPEEGIDVHNDD 123
           VPTS LQH S +E G S YSS VRSP PN TS   NNDP S PADE+ A EE  +VHND+
Sbjct: 108 VPTSSLQHTSNIELGSSPYSSPVRSPVPNTTSFGPNNDPASTPADESAATEERTNVHNDE 167

Query: 124 DELDPVILEVNTGDIPFDVNVDNTSATPTESSAFSEESRRVKKKS 169
           ++L+P   + +TG+IP D   DN    P E+ AF EESR  KKKS
Sbjct: 168 NKLEPANPDNHTGEIPID--ADNNLVGPIETHAFPEESRPTKKKS 210

[Close]

BLAST of IVF0015311.1 vs. ExPASy TrEMBL
Match: A0A5D3C2V7 (Envelope-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold68G00920 PE=4 SV=1)

HSP 1 Score: 172.2 bits (435), Expect = 1.9e-39
Identity = 96/130 (73.85%), Postives = 105/130 (80.77%), Query Frame = 0


Query: 38  NVVVERPIDPLVSNHSQESSSTEGVFVPTSGLQHISTVESGPSLYSSLVRSPTPNPTSSS 97
           +V VERPID  VS+H+QE+SSTEGVFVPT GLQH ST E GPSLYSSLV+SPTP+ TSSS
Sbjct: 35  HVAVERPIDAPVSDHAQENSSTEGVFVPTPGLQHTSTFEPGPSLYSSLVQSPTPHSTSSS 94

Query: 98  QNNDPTSPPADETVAPEEGIDVHNDDDELDPVILEVNTGDIPFDVNVDNTSATPTESSAF 157
             NDP SPPADET A E G DVHNDDDELDPVI +VNT +IP DV+VDNT A PTES AF
Sbjct: 95  LKNDPASPPADETAALERGTDVHNDDDELDPVIPKVNTCEIPVDVDVDNTLAAPTESPAF 154

Query: 158 SEESRRVKKK 168
            E SR  KKK
Sbjct: 155 PEISRPAKKK 164

[Close]

BLAST of IVF0015311.1 vs. NCBI nr
Match: KAA0053124.1 (putative gag-pol polyprotein [Cucumis melo var. makuwa] >TYJ95499.1 putative gag-pol polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 320 bits (819), Expect = 2.28e-104
Identity = 168/168 (100.00%), Postives = 168/168 (100.00%), Query Frame = 0


Query: 1   MIAEHAPGALETHMSYMDSDDLDDVPLTRLLKKTSITNVVVERPIDPLVSNHSQESSSTE 60
           MIAEHAPGALETHMSYMDSDDLDDVPLTRLLKKTSITNVVVERPIDPLVSNHSQESSSTE
Sbjct: 391 MIAEHAPGALETHMSYMDSDDLDDVPLTRLLKKTSITNVVVERPIDPLVSNHSQESSSTE 450

Query: 61  GVFVPTSGLQHISTVESGPSLYSSLVRSPTPNPTSSSQNNDPTSPPADETVAPEEGIDVH 120
           GVFVPTSGLQHISTVESGPSLYSSLVRSPTPNPTSSSQNNDPTSPPADETVAPEEGIDVH
Sbjct: 451 GVFVPTSGLQHISTVESGPSLYSSLVRSPTPNPTSSSQNNDPTSPPADETVAPEEGIDVH 510

Query: 121 NDDDELDPVILEVNTGDIPFDVNVDNTSATPTESSAFSEESRRVKKKS 168
           NDDDELDPVILEVNTGDIPFDVNVDNTSATPTESSAFSEESRRVKKKS
Sbjct: 511 NDDDELDPVILEVNTGDIPFDVNVDNTSATPTESSAFSEESRRVKKKS 558

[Close]

BLAST of IVF0015311.1 vs. NCBI nr
Match: KAA0050594.1 (envelope-like protein [Cucumis melo var. makuwa] >TYK07846.1 envelope-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 226 bits (575), Expect = 1.42e-71
Identity = 123/166 (74.10%), Postives = 133/166 (80.12%), Query Frame = 0


Query: 2   IAEHAPGALETHMSYMDSDDLDDVPLTRLLKKTSITNVVVERPIDPLVSNHSQESSSTEG 61
           IA++ PGALE HMS MDS+DLDDVPL RLLKKTS+ +V VERPIDP VS+H QESSSTEG
Sbjct: 77  IAKYPPGALEAHMSNMDSNDLDDVPLARLLKKTSVPDVAVERPIDPPVSDHFQESSSTEG 136

Query: 62  VFVPTSGLQHISTVESGPSLYSSLVRSPTPNPTSSSQNNDPTSPPADETVAPEEGIDVHN 121
           V VPT GLQH  T+E GPS YSSLVRSP PN TSS  NND  S  ADE  APE GIDVHN
Sbjct: 137 VLVPTPGLQHTFTLEPGPSFYSSLVRSPAPNTTSSGLNNDHASQSADEIAAPEGGIDVHN 196

Query: 122 DDDELDPVILEVNTGDIPFDVNVDNTSATPTESSAFSEESRRVKKK 167
           +DDELDPVI EVNTG+IP DV+VDNTSA PTES  F EESR  KKK
Sbjct: 197 NDDELDPVIPEVNTGEIPVDVDVDNTSAAPTESPTFPEESRPTKKK 242

[Close]

BLAST of IVF0015311.1 vs. NCBI nr
Match: KAA0060580.1 (envelope-like protein [Cucumis melo var. makuwa] >TYK02291.1 envelope-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 209 bits (531), Expect = 5.95e-65
Identity = 117/162 (72.22%), Postives = 129/162 (79.63%), Query Frame = 0


Query: 2   IAEHAPGALETHMSYMDSDDLDDVPLTRLLKKTSITNVVVERPIDPLVSNHSQESSSTEG 61
           IAEH PGA  THM  MDSDDLDDVPL RLLKKTSI +V VERPIDP VS+HS+E+SS EG
Sbjct: 77  IAEHDPGAPATHMFDMDSDDLDDVPLARLLKKTSIPDVAVERPIDPHVSDHSKENSSPEG 136

Query: 62  VFVPTSGLQHISTVESGPSLYSSLVRSPTPNPTSSSQNNDPTSPPADETVAPEEGIDVHN 121
           VFVPT  LQHISTVE G SLYSS V+S TPN TSS  NND  SPP DET AP+ G DVHN
Sbjct: 137 VFVPTPNLQHISTVEPGSSLYSSPVQSSTPNTTSSGLNNDTASPPVDETAAPKGGTDVHN 196

Query: 122 DDDELDPVILEVNTGDIPFDVNVD--NTSATPTESSAFSEES 161
           DDDEL+P++ EVNTG+I  DV+VD  NTSAT T+S AF EES
Sbjct: 197 DDDELEPIVPEVNTGEILVDVDVDVNNTSATSTKSPAFPEES 238

[Close]

BLAST of IVF0015311.1 vs. NCBI nr
Match: KAA0055469.1 (envelope-like protein [Cucumis melo var. makuwa] >TYK08951.1 envelope-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 184 bits (467), Expect = 1.30e-55
Identity = 103/165 (62.42%), Postives = 122/165 (73.94%), Query Frame = 0


Query: 4   EHAPGALETHMSYMDSDDLDDVPLTRLLKKTSITNVVVERPIDPLVSNHSQESSSTEGVF 63
           EHAP ALETHMS +DSD+L+DVPL  ++KKT +++V  ERPIDPLVS HSQESSSTEGVF
Sbjct: 48  EHAPSALETHMSDIDSDELNDVPLACMIKKTFVSDVTAERPIDPLVSVHSQESSSTEGVF 107

Query: 64  VPTSGLQHISTVESGPSLYSSLVRSPTPNPTSSSQNNDPTSPPADETVAPEEGIDVHNDD 123
           VPTS LQH S +E G S YSS VRSP PN TS   NNDP S PADE+ A EE  +VHND+
Sbjct: 108 VPTSSLQHTSNIELGSSPYSSPVRSPVPNTTSFGPNNDPASTPADESAATEERTNVHNDE 167

Query: 124 DELDPVILEVNTGDIPFDVNVDNTSATPTESSAFSEESRRVKKKS 168
           ++L+P   + +TG+IP D   DN    P E+ AF EESR  KKKS
Sbjct: 168 NKLEPANPDNHTGEIPIDA--DNNLVGPIETHAFPEESRPTKKKS 210

[Close]

BLAST of IVF0015311.1 vs. NCBI nr
Match: TYK04776.1 (envelope-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 172 bits (437), Expect = 1.21e-51
Identity = 96/130 (73.85%), Postives = 105/130 (80.77%), Query Frame = 0


Query: 38  NVVVERPIDPLVSNHSQESSSTEGVFVPTSGLQHISTVESGPSLYSSLVRSPTPNPTSSS 97
           +V VERPID  VS+H+QE+SSTEGVFVPT GLQH ST E GPSLYSSLV+SPTP+ TSSS
Sbjct: 35  HVAVERPIDAPVSDHAQENSSTEGVFVPTPGLQHTSTFEPGPSLYSSLVQSPTPHSTSSS 94

Query: 98  QNNDPTSPPADETVAPEEGIDVHNDDDELDPVILEVNTGDIPFDVNVDNTSATPTESSAF 157
             NDP SPPADET A E G DVHNDDDELDPVI +VNT +IP DV+VDNT A PTES AF
Sbjct: 95  LKNDPASPPADETAALERGTDVHNDDDELDPVIPKVNTCEIPVDVDVDNTLAAPTESPAF 154

Query: 158 SEESRRVKKK 167
            E SR  KKK
Sbjct: 155 PEISRPAKKK 164

The following BLAST results are available for this feature:

BLAST of IVF0015311.1 vs.


Match Name	E-value	Identity	Description

BLAST of IVF0015311.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7UCZ0	9.5e-84	100.00	Putative gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sca...	[more]
A0A5A7U5S6	1.9e-55	74.10	Envelope-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold17...	[more]
A0A5A7UZP9	1.8e-50	72.22	Envelope-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold18...	[more]
A0A5A7UPS8	8.1e-43	62.42	Envelope-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold31...	[more]
A0A5D3C2V7	1.9e-39	73.85	Envelope-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold68...	[more]

BLAST of IVF0015311.1 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0053124.1	2.28e-104	100.00	putative gag-pol polyprotein [Cucumis melo var. makuwa] >TYJ95499.1 putative gag...	[more]
KAA0050594.1	1.42e-71	74.10	envelope-like protein [Cucumis melo var. makuwa] >TYK07846.1 envelope-like prote...	[more]
KAA0060580.1	5.95e-65	72.22	envelope-like protein [Cucumis melo var. makuwa] >TYK02291.1 envelope-like prote...	[more]
KAA0055469.1	1.30e-55	62.42	envelope-like protein [Cucumis melo var. makuwa] >TYK08951.1 envelope-like prote...	[more]
TYK04776.1	1.21e-51	73.85	envelope-like protein [Cucumis melo var. makuwa]	[more]

BLAST of IVF0015311.1 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 140..157
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 73..125
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 73..106
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 137..168

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
IVF0015311	IVF0015311	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
IVF0015311.1-exon	IVF0015311.1-exon-chr04:10665664..10666170	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
IVF0015311.1-cds	IVF0015311.1-cds-chr04:10665664..10666170	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
IVF0015311.1	IVF0015311.1-protein	polypeptide