Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATGGAAATCAAAAAGAGGCGACAGCCGCCAGTTTTAGCGCCACCATCAATGCTCGGATCAGACAGCCATGGACAAATGGTTCTACCGCCTTCAGACAACGCCCGCAAGTGCATTCCTGTCAATTCTGCAATCTTCTGCACCGTAAAGCATGCCTCACGTGTCGCCCACACACCACAACCGAACCTCCACACACTACCACCGGAGCTACACGCGCCAGTTCTTCCTCCTCAAACAGTTTCGACCATCCTATCTGTGCAACCCTCTTCTTCATTTGCAGCCTATACTGCTCCCCACACCCCGATTCGTGCTCTGCCACCTAATTCCGACAAGCCACCATCGCTTCTGCCGTCAAATTCGTATGCCCTCCCCCACTGA
mRNA sequence
ATGATGGAAATCAAAAAGAGGCGACAGCCGCCAGTTTTAGCGCCACCATCAATGCTCGGATCAGACAGCCATGGACAAATGGTTCTACCGCCTTCAGACAACGCCCGCAAGTGCATTCCTGTCAATTCTGCAATCTTCTGCACCGTAAAGCATGCCTCACGTGTCGCCCACACACCACAACCGAACCTCCACACACTACCACCGGAGCTACACGCGCCAGTTCTTCCTCCTCAAACAGTTTCGACCATCCTATCTGTGCAACCCTCTTCTTCATTTGCAGCCTATACTGCTCCCCACACCCCGATTCGTGCTCTGCCACCTAATTCCGACAAGCCACCATCGCTTCTGCCGTCAAATTCGTATGCCCTCCCCCACTGA
Coding sequence (CDS)
ATGATGGAAATCAAAAAGAGGCGACAGCCGCCAGTTTTAGCGCCACCATCAATGCTCGGATCAGACAGCCATGGACAAATGGTTCTACCGCCTTCAGACAACGCCCGCAAGTGCATTCCTGTCAATTCTGCAATCTTCTGCACCGTAAAGCATGCCTCACGTGTCGCCCACACACCACAACCGAACCTCCACACACTACCACCGGAGCTACACGCGCCAGTTCTTCCTCCTCAAACAGTTTCGACCATCCTATCTGTGCAACCCTCTTCTTCATTTGCAGCCTATACTGCTCCCCACACCCCGATTCGTGCTCTGCCACCTAATTCCGACAAGCCACCATCGCTTCTGCCGTCAAATTCGTATGCCCTCCCCCACTGA
Protein sequence
MMEIKKRRQPPVLAPPSMLGSDSHGQMVLPPSDNARKCIPVNSAIFCTVKHASRVAHTPQPNLHTLPPELHAPVLPPQTVSTILSVQPSSSFAAYTAPHTPIRALPPNSDKPPSLLPSNSYALPH
Homology
BLAST of IVF0015156 vs. ExPASy TrEMBL
Match:
A0A5D3C0E8 (Kirola-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold347G00100 PE=4 SV=1)
HSP 1 Score: 101.3 bits (251), Expect = 3.0e-18
Identity = 59/98 (60.20%), Postives = 67/98 (68.37%), Query Frame = 0
Query: 27 MVLPPSDNARKCIPVNSAIFCTVKHASRVAHTPQPNLHTLPPELHAPVLPPQTVSTILSV 86
MV PPSDNA KCIPVNS T+ +A+ H L +LH P LPPQT TI S+
Sbjct: 1 MVPPPSDNADKCIPVNS----TIVYAT----------HALLLDLHTPFLPPQTGPTIPSM 60
Query: 87 QPSSSFAAYTAPHTPIRALPPNSDKPPSLLPSNSYALP 125
QPSSS AAY AP+ PIR LPPNS++PP LLPSN YALP
Sbjct: 61 QPSSSSAAYIAPYAPIRVLPPNSERPPPLLPSNLYALP 84
BLAST of IVF0015156 vs. ExPASy TrEMBL
Match:
A0A5D3DYG3 (Kirola-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold2030G00570 PE=4 SV=1)
HSP 1 Score: 89.7 bits (221), Expect = 9.1e-15
Identity = 54/104 (51.92%), Postives = 61/104 (58.65%), Query Frame = 0
Query: 21 SDSHGQMVLPPSDNARKCIPVNSAIFCTVKHASRVAHTPQPNLHTLPPELHAPVLPPQTV 80
S ++GQMV PS+N KCI VNS + C VKHASRVA NLH LP +LH V
Sbjct: 41 SATYGQMVSLPSNNTGKCITVNSVVACGVKHASRVA----ANLHVLPSDLHVTV------ 100
Query: 81 STILSVQPSSSFAAYTAPHTPIRALPPNSDKPPSLLPSNSYALP 125
++ AY PH PIR LPPNSD PP LL SN YALP
Sbjct: 101 -------AGATCIAYIVPHAPIRVLPPNSDWPPPLLLSNLYALP 127
BLAST of IVF0015156 vs. ExPASy TrEMBL
Match:
A0A5D3DUL0 (Kirola-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold325G00600 PE=4 SV=1)
HSP 1 Score: 85.1 bits (209), Expect = 2.2e-13
Identity = 54/98 (55.10%), Postives = 59/98 (60.20%), Query Frame = 0
Query: 27 MVLPPSDNARKCIPVNSAIFCTVKHASRVAHTPQPNLHTLPPELHAPVLPPQTVSTILSV 86
MVLPPSDNA +CI ++S + V+ A R HAPV PQTV TI SV
Sbjct: 1 MVLPPSDNADQCILIDSVV---VRAAKR---------------RHAPVHLPQTVPTIPSV 60
Query: 87 QPSSSFAAYTAPHTPIRALPPNSDKPPSLLPSNSYALP 125
QPSSS AY APH PI LPPN PPSLLP N YALP
Sbjct: 61 QPSSSSTAYIAPHAPIHLLPPNFGWPPSLLPLNLYALP 80
BLAST of IVF0015156 vs. ExPASy TrEMBL
Match:
A0A5A7V367 (Kirola-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold130G001030 PE=4 SV=1)
HSP 1 Score: 85.1 bits (209), Expect = 2.2e-13
Identity = 54/98 (55.10%), Postives = 59/98 (60.20%), Query Frame = 0
Query: 27 MVLPPSDNARKCIPVNSAIFCTVKHASRVAHTPQPNLHTLPPELHAPVLPPQTVSTILSV 86
MVLPPSDNA +CI ++S + V+ A R HAPV PQTV TI SV
Sbjct: 1 MVLPPSDNADQCILIDSVV---VRAAKR---------------RHAPVHLPQTVPTIPSV 60
Query: 87 QPSSSFAAYTAPHTPIRALPPNSDKPPSLLPSNSYALP 125
QPSSS AY APH PI LPPN PPSLLP N YALP
Sbjct: 61 QPSSSSTAYIAPHAPIHLLPPNFGWPPSLLPLNLYALP 80
BLAST of IVF0015156 vs. ExPASy TrEMBL
Match:
A0A5D3D376 (Reverse transcriptase domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold306G002050 PE=4 SV=1)
HSP 1 Score: 82.0 bits (201), Expect = 1.9e-12
Identity = 45/67 (67.16%), Postives = 47/67 (70.15%), Query Frame = 0
Query: 58 TPQPNLHTLPPELHAPVLPPQTVSTILSVQPSSSFAAYTAPHTPIRALPPNSDKPPSLLP 117
TP H LPPELHA V PPQT+ TI SVQPS S AAY APH I LPPNS +P LLP
Sbjct: 205 TPPNTSHALPPELHASVHPPQTMPTIPSVQPSFSSAAYIAPHALIHVLPPNSGQPSPLLP 264
Query: 118 SNSYALP 125
SN YALP
Sbjct: 265 SNLYALP 271
BLAST of IVF0015156 vs. NCBI nr
Match:
TYK03819.1 (kirola-like [Cucumis melo var. makuwa])
HSP 1 Score: 101 bits (252), Expect = 2.12e-24
Identity = 59/98 (60.20%), Postives = 67/98 (68.37%), Query Frame = 0
Query: 27 MVLPPSDNARKCIPVNSAIFCTVKHASRVAHTPQPNLHTLPPELHAPVLPPQTVSTILSV 86
MV PPSDNA KCIPVNS T+ +A+ H L +LH P LPPQT TI S+
Sbjct: 1 MVPPPSDNADKCIPVNS----TIVYAT----------HALLLDLHTPFLPPQTGPTIPSM 60
Query: 87 QPSSSFAAYTAPHTPIRALPPNSDKPPSLLPSNSYALP 124
QPSSS AAY AP+ PIR LPPNS++PP LLPSN YALP
Sbjct: 61 QPSSSSAAYIAPYAPIRVLPPNSERPPPLLPSNLYALP 84
BLAST of IVF0015156 vs. NCBI nr
Match:
TYK28631.1 (kirola-like [Cucumis melo var. makuwa])
HSP 1 Score: 89.4 bits (220), Expect = 8.12e-19
Identity = 54/104 (51.92%), Postives = 61/104 (58.65%), Query Frame = 0
Query: 21 SDSHGQMVLPPSDNARKCIPVNSAIFCTVKHASRVAHTPQPNLHTLPPELHAPVLPPQTV 80
S ++GQMV PS+N KCI VNS + C VKHASRVA NLH LP +LH V
Sbjct: 41 SATYGQMVSLPSNNTGKCITVNSVVACGVKHASRVAA----NLHVLPSDLHVTVA----- 100
Query: 81 STILSVQPSSSFAAYTAPHTPIRALPPNSDKPPSLLPSNSYALP 124
++ AY PH PIR LPPNSD PP LL SN YALP
Sbjct: 101 --------GATCIAYIVPHAPIRVLPPNSDWPPPLLLSNLYALP 127
BLAST of IVF0015156 vs. NCBI nr
Match:
TYK27381.1 (kirola-like [Cucumis melo var. makuwa])
HSP 1 Score: 85.1 bits (209), Expect = 1.75e-17
Identity = 52/98 (53.06%), Postives = 56/98 (57.14%), Query Frame = 0
Query: 27 MVLPPSDNARKCIPVNSAIFCTVKHASRVAHTPQPNLHTLPPELHAPVLPPQTVSTILSV 86
MVLPPSDNA +CI ++S + K HAPV PQTV TI SV
Sbjct: 1 MVLPPSDNADQCILIDSVVVRAAKRR------------------HAPVHLPQTVPTIPSV 60
Query: 87 QPSSSFAAYTAPHTPIRALPPNSDKPPSLLPSNSYALP 124
QPSSS AY APH PI LPPN PPSLLP N YALP
Sbjct: 61 QPSSSSTAYIAPHAPIHLLPPNFGWPPSLLPLNLYALP 80
BLAST of IVF0015156 vs. NCBI nr
Match:
KAA0062503.1 (kirola-like [Cucumis melo var. makuwa])
HSP 1 Score: 85.1 bits (209), Expect = 1.75e-17
Identity = 52/98 (53.06%), Postives = 56/98 (57.14%), Query Frame = 0
Query: 27 MVLPPSDNARKCIPVNSAIFCTVKHASRVAHTPQPNLHTLPPELHAPVLPPQTVSTILSV 86
MVLPPSDNA +CI ++S + K HAPV PQTV TI SV
Sbjct: 1 MVLPPSDNADQCILIDSVVVRAAKRR------------------HAPVHLPQTVPTIPSV 60
Query: 87 QPSSSFAAYTAPHTPIRALPPNSDKPPSLLPSNSYALP 124
QPSSS AY APH PI LPPN PPSLLP N YALP
Sbjct: 61 QPSSSSTAYIAPHAPIHLLPPNFGWPPSLLPLNLYALP 80
BLAST of IVF0015156 vs. NCBI nr
Match:
KAA0041978.1 (uncharacterized protein E6C27_scaffold67G004150 [Cucumis melo var. makuwa] >TYK17914.1 uncharacterized protein E5676_scaffold306G002050 [Cucumis melo var. makuwa])
HSP 1 Score: 82.4 bits (202), Expect = 9.45e-16
Identity = 45/67 (67.16%), Postives = 47/67 (70.15%), Query Frame = 0
Query: 58 TPQPNLHTLPPELHAPVLPPQTVSTILSVQPSSSFAAYTAPHTPIRALPPNSDKPPSLLP 117
TP H LPPELHA V PPQT+ TI SVQPS S AAY APH I LPPNS +P LLP
Sbjct: 205 TPPNTSHALPPELHASVHPPQTMPTIPSVQPSFSSAAYIAPHALIHVLPPNSGQPSPLLP 264
Query: 118 SNSYALP 124
SN YALP
Sbjct: 265 SNLYALP 271
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A5D3C0E8 | 3.0e-18 | 60.20 | Kirola-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold347G00100 PE... | [more] |
A0A5D3DYG3 | 9.1e-15 | 51.92 | Kirola-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold2030G00570 P... | [more] |
A0A5D3DUL0 | 2.2e-13 | 55.10 | Kirola-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold325G00600 PE... | [more] |
A0A5A7V367 | 2.2e-13 | 55.10 | Kirola-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold130G001030 P... | [more] |
A0A5D3D376 | 1.9e-12 | 67.16 | Reverse transcriptase domain-containing protein OS=Cucumis melo var. makuwa OX=1... | [more] |
Match Name | E-value | Identity | Description | |
TYK03819.1 | 2.12e-24 | 60.20 | kirola-like [Cucumis melo var. makuwa] | [more] |
TYK28631.1 | 8.12e-19 | 51.92 | kirola-like [Cucumis melo var. makuwa] | [more] |
TYK27381.1 | 1.75e-17 | 53.06 | kirola-like [Cucumis melo var. makuwa] | [more] |
KAA0062503.1 | 1.75e-17 | 53.06 | kirola-like [Cucumis melo var. makuwa] | [more] |
KAA0041978.1 | 9.45e-16 | 67.16 | uncharacterized protein E6C27_scaffold67G004150 [Cucumis melo var. makuwa] >TYK1... | [more] |
Match Name | E-value | Identity | Description | |