IVF0015156.1 (mRNA) Melon (IVF77) v1

Overview


Name	IVF0015156.1
Type	mRNA
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	Kirola-like
Location	chr10: 22227466 .. 22227843 (-)
Sequence length	378
RNA-Seq Expression	IVF0015156.1
Synteny	IVF0015156.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATGGAAATCAAAAAGAGGCGACAGCCGCCAGTTTTAGCGCCACCATCAATGCTCGGATCAGACAGCCATGGACAAATGGTTCTACCGCCTTCAGACAACGCCCGCAAGTGCATTCCTGTCAATTCTGCAATCTTCTGCACCGTAAAGCATGCCTCACGTGTCGCCCACACACCACAACCGAACCTCCACACACTACCACCGGAGCTACACGCGCCAGTTCTTCCTCCTCAAACAGTTTCGACCATCCTATCTGTGCAACCCTCTTCTTCATTTGCAGCCTATACTGCTCCCCACACCCCGATTCGTGCTCTGCCACCTAATTCCGACAAGCCACCATCGCTTCTGCCGTCAAATTCGTATGCCCTCCCCCACTGA

mRNA sequence

ATGATGGAAATCAAAAAGAGGCGACAGCCGCCAGTTTTAGCGCCACCATCAATGCTCGGATCAGACAGCCATGGACAAATGGTTCTACCGCCTTCAGACAACGCCCGCAAGTGCATTCCTGTCAATTCTGCAATCTTCTGCACCGTAAAGCATGCCTCACGTGTCGCCCACACACCACAACCGAACCTCCACACACTACCACCGGAGCTACACGCGCCAGTTCTTCCTCCTCAAACAGTTTCGACCATCCTATCTGTGCAACCCTCTTCTTCATTTGCAGCCTATACTGCTCCCCACACCCCGATTCGTGCTCTGCCACCTAATTCCGACAAGCCACCATCGCTTCTGCCGTCAAATTCGTATGCCCTCCCCCACTGA

Coding sequence (CDS)

ATGATGGAAATCAAAAAGAGGCGACAGCCGCCAGTTTTAGCGCCACCATCAATGCTCGGATCAGACAGCCATGGACAAATGGTTCTACCGCCTTCAGACAACGCCCGCAAGTGCATTCCTGTCAATTCTGCAATCTTCTGCACCGTAAAGCATGCCTCACGTGTCGCCCACACACCACAACCGAACCTCCACACACTACCACCGGAGCTACACGCGCCAGTTCTTCCTCCTCAAACAGTTTCGACCATCCTATCTGTGCAACCCTCTTCTTCATTTGCAGCCTATACTGCTCCCCACACCCCGATTCGTGCTCTGCCACCTAATTCCGACAAGCCACCATCGCTTCTGCCGTCAAATTCGTATGCCCTCCCCCACTGA

Protein sequence

MMEIKKRRQPPVLAPPSMLGSDSHGQMVLPPSDNARKCIPVNSAIFCTVKHASRVAHTPQPNLHTLPPELHAPVLPPQTVSTILSVQPSSSFAAYTAPHTPIRALPPNSDKPPSLLPSNSYALPH

Homology

[Close]

BLAST of IVF0015156.1 vs. ExPASy TrEMBL
Match: A0A5D3C0E8 (Kirola-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold347G00100 PE=4 SV=1)

HSP 1 Score: 101.3 bits (251), Expect = 3.0e-18
Identity = 59/98 (60.20%), Postives = 67/98 (68.37%), Query Frame = 0


Query: 27  MVLPPSDNARKCIPVNSAIFCTVKHASRVAHTPQPNLHTLPPELHAPVLPPQTVSTILSV 86
           MV PPSDNA KCIPVNS    T+ +A+          H L  +LH P LPPQT  TI S+
Sbjct: 1   MVPPPSDNADKCIPVNS----TIVYAT----------HALLLDLHTPFLPPQTGPTIPSM 60

Query: 87  QPSSSFAAYTAPHTPIRALPPNSDKPPSLLPSNSYALP 125
           QPSSS AAY AP+ PIR LPPNS++PP LLPSN YALP
Sbjct: 61  QPSSSSAAYIAPYAPIRVLPPNSERPPPLLPSNLYALP 84

[Close]

BLAST of IVF0015156.1 vs. ExPASy TrEMBL
Match: A0A5D3DYG3 (Kirola-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold2030G00570 PE=4 SV=1)

HSP 1 Score: 89.7 bits (221), Expect = 9.1e-15
Identity = 54/104 (51.92%), Postives = 61/104 (58.65%), Query Frame = 0


Query: 21  SDSHGQMVLPPSDNARKCIPVNSAIFCTVKHASRVAHTPQPNLHTLPPELHAPVLPPQTV 80
           S ++GQMV  PS+N  KCI VNS + C VKHASRVA     NLH LP +LH  V      
Sbjct: 41  SATYGQMVSLPSNNTGKCITVNSVVACGVKHASRVA----ANLHVLPSDLHVTV------ 100

Query: 81  STILSVQPSSSFAAYTAPHTPIRALPPNSDKPPSLLPSNSYALP 125
                    ++  AY  PH PIR LPPNSD PP LL SN YALP
Sbjct: 101 -------AGATCIAYIVPHAPIRVLPPNSDWPPPLLLSNLYALP 127

[Close]

BLAST of IVF0015156.1 vs. ExPASy TrEMBL
Match: A0A5D3DUL0 (Kirola-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold325G00600 PE=4 SV=1)

HSP 1 Score: 85.1 bits (209), Expect = 2.2e-13
Identity = 54/98 (55.10%), Postives = 59/98 (60.20%), Query Frame = 0


Query: 27  MVLPPSDNARKCIPVNSAIFCTVKHASRVAHTPQPNLHTLPPELHAPVLPPQTVSTILSV 86
           MVLPPSDNA +CI ++S +   V+ A R                HAPV  PQTV TI SV
Sbjct: 1   MVLPPSDNADQCILIDSVV---VRAAKR---------------RHAPVHLPQTVPTIPSV 60

Query: 87  QPSSSFAAYTAPHTPIRALPPNSDKPPSLLPSNSYALP 125
           QPSSS  AY APH PI  LPPN   PPSLLP N YALP
Sbjct: 61  QPSSSSTAYIAPHAPIHLLPPNFGWPPSLLPLNLYALP 80

[Close]

BLAST of IVF0015156.1 vs. ExPASy TrEMBL
Match: A0A5A7V367 (Kirola-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold130G001030 PE=4 SV=1)

HSP 1 Score: 85.1 bits (209), Expect = 2.2e-13
Identity = 54/98 (55.10%), Postives = 59/98 (60.20%), Query Frame = 0


Query: 27  MVLPPSDNARKCIPVNSAIFCTVKHASRVAHTPQPNLHTLPPELHAPVLPPQTVSTILSV 86
           MVLPPSDNA +CI ++S +   V+ A R                HAPV  PQTV TI SV
Sbjct: 1   MVLPPSDNADQCILIDSVV---VRAAKR---------------RHAPVHLPQTVPTIPSV 60

Query: 87  QPSSSFAAYTAPHTPIRALPPNSDKPPSLLPSNSYALP 125
           QPSSS  AY APH PI  LPPN   PPSLLP N YALP
Sbjct: 61  QPSSSSTAYIAPHAPIHLLPPNFGWPPSLLPLNLYALP 80

[Close]

BLAST of IVF0015156.1 vs. ExPASy TrEMBL
Match: A0A5D3D376 (Reverse transcriptase domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold306G002050 PE=4 SV=1)

HSP 1 Score: 82.0 bits (201), Expect = 1.9e-12
Identity = 45/67 (67.16%), Postives = 47/67 (70.15%), Query Frame = 0


Query: 58  TPQPNLHTLPPELHAPVLPPQTVSTILSVQPSSSFAAYTAPHTPIRALPPNSDKPPSLLP 117
           TP    H LPPELHA V PPQT+ TI SVQPS S AAY APH  I  LPPNS +P  LLP
Sbjct: 205 TPPNTSHALPPELHASVHPPQTMPTIPSVQPSFSSAAYIAPHALIHVLPPNSGQPSPLLP 264

Query: 118 SNSYALP 125
           SN YALP
Sbjct: 265 SNLYALP 271

[Close]

BLAST of IVF0015156.1 vs. NCBI nr
Match: TYK03819.1 (kirola-like [Cucumis melo var. makuwa])

HSP 1 Score: 101 bits (252), Expect = 2.12e-24
Identity = 59/98 (60.20%), Postives = 67/98 (68.37%), Query Frame = 0


Query: 27  MVLPPSDNARKCIPVNSAIFCTVKHASRVAHTPQPNLHTLPPELHAPVLPPQTVSTILSV 86
           MV PPSDNA KCIPVNS    T+ +A+          H L  +LH P LPPQT  TI S+
Sbjct: 1   MVPPPSDNADKCIPVNS----TIVYAT----------HALLLDLHTPFLPPQTGPTIPSM 60

Query: 87  QPSSSFAAYTAPHTPIRALPPNSDKPPSLLPSNSYALP 124
           QPSSS AAY AP+ PIR LPPNS++PP LLPSN YALP
Sbjct: 61  QPSSSSAAYIAPYAPIRVLPPNSERPPPLLPSNLYALP 84

[Close]

BLAST of IVF0015156.1 vs. NCBI nr
Match: TYK28631.1 (kirola-like [Cucumis melo var. makuwa])

HSP 1 Score: 89.4 bits (220), Expect = 8.12e-19
Identity = 54/104 (51.92%), Postives = 61/104 (58.65%), Query Frame = 0


Query: 21  SDSHGQMVLPPSDNARKCIPVNSAIFCTVKHASRVAHTPQPNLHTLPPELHAPVLPPQTV 80
           S ++GQMV  PS+N  KCI VNS + C VKHASRVA     NLH LP +LH  V      
Sbjct: 41  SATYGQMVSLPSNNTGKCITVNSVVACGVKHASRVAA----NLHVLPSDLHVTVA----- 100

Query: 81  STILSVQPSSSFAAYTAPHTPIRALPPNSDKPPSLLPSNSYALP 124
                    ++  AY  PH PIR LPPNSD PP LL SN YALP
Sbjct: 101 --------GATCIAYIVPHAPIRVLPPNSDWPPPLLLSNLYALP 127

[Close]

BLAST of IVF0015156.1 vs. NCBI nr
Match: TYK27381.1 (kirola-like [Cucumis melo var. makuwa])

HSP 1 Score: 85.1 bits (209), Expect = 1.75e-17
Identity = 52/98 (53.06%), Postives = 56/98 (57.14%), Query Frame = 0


Query: 27  MVLPPSDNARKCIPVNSAIFCTVKHASRVAHTPQPNLHTLPPELHAPVLPPQTVSTILSV 86
           MVLPPSDNA +CI ++S +    K                    HAPV  PQTV TI SV
Sbjct: 1   MVLPPSDNADQCILIDSVVVRAAKRR------------------HAPVHLPQTVPTIPSV 60

Query: 87  QPSSSFAAYTAPHTPIRALPPNSDKPPSLLPSNSYALP 124
           QPSSS  AY APH PI  LPPN   PPSLLP N YALP
Sbjct: 61  QPSSSSTAYIAPHAPIHLLPPNFGWPPSLLPLNLYALP 80

[Close]

BLAST of IVF0015156.1 vs. NCBI nr
Match: KAA0062503.1 (kirola-like [Cucumis melo var. makuwa])

HSP 1 Score: 85.1 bits (209), Expect = 1.75e-17
Identity = 52/98 (53.06%), Postives = 56/98 (57.14%), Query Frame = 0


Query: 27  MVLPPSDNARKCIPVNSAIFCTVKHASRVAHTPQPNLHTLPPELHAPVLPPQTVSTILSV 86
           MVLPPSDNA +CI ++S +    K                    HAPV  PQTV TI SV
Sbjct: 1   MVLPPSDNADQCILIDSVVVRAAKRR------------------HAPVHLPQTVPTIPSV 60

Query: 87  QPSSSFAAYTAPHTPIRALPPNSDKPPSLLPSNSYALP 124
           QPSSS  AY APH PI  LPPN   PPSLLP N YALP
Sbjct: 61  QPSSSSTAYIAPHAPIHLLPPNFGWPPSLLPLNLYALP 80

[Close]

BLAST of IVF0015156.1 vs. NCBI nr
Match: KAA0041978.1 (uncharacterized protein E6C27_scaffold67G004150 [Cucumis melo var. makuwa] >TYK17914.1 uncharacterized protein E5676_scaffold306G002050 [Cucumis melo var. makuwa])

HSP 1 Score: 82.4 bits (202), Expect = 9.45e-16
Identity = 45/67 (67.16%), Postives = 47/67 (70.15%), Query Frame = 0


Query: 58  TPQPNLHTLPPELHAPVLPPQTVSTILSVQPSSSFAAYTAPHTPIRALPPNSDKPPSLLP 117
           TP    H LPPELHA V PPQT+ TI SVQPS S AAY APH  I  LPPNS +P  LLP
Sbjct: 205 TPPNTSHALPPELHASVHPPQTMPTIPSVQPSFSSAAYIAPHALIHVLPPNSGQPSPLLP 264

Query: 118 SNSYALP 124
           SN YALP
Sbjct: 265 SNLYALP 271

The following BLAST results are available for this feature:

BLAST of IVF0015156.1 vs.


Match Name	E-value	Identity	Description

BLAST of IVF0015156.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3C0E8	3.0e-18	60.20	Kirola-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold347G00100 PE...	[more]
A0A5D3DYG3	9.1e-15	51.92	Kirola-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold2030G00570 P...	[more]
A0A5D3DUL0	2.2e-13	55.10	Kirola-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold325G00600 PE...	[more]
A0A5A7V367	2.2e-13	55.10	Kirola-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold130G001030 P...	[more]
A0A5D3D376	1.9e-12	67.16	Reverse transcriptase domain-containing protein OS=Cucumis melo var. makuwa OX=1...	[more]

BLAST of IVF0015156.1 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK03819.1	2.12e-24	60.20	kirola-like [Cucumis melo var. makuwa]	[more]
TYK28631.1	8.12e-19	51.92	kirola-like [Cucumis melo var. makuwa]	[more]
TYK27381.1	1.75e-17	53.06	kirola-like [Cucumis melo var. makuwa]	[more]
KAA0062503.1	1.75e-17	53.06	kirola-like [Cucumis melo var. makuwa]	[more]
KAA0041978.1	9.45e-16	67.16	uncharacterized protein E6C27_scaffold67G004150 [Cucumis melo var. makuwa] >TYK1...	[more]

BLAST of IVF0015156.1 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..31
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 100..125

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
IVF0015156	IVF0015156	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
IVF0015156.1-exon	IVF0015156.1-exon-chr10:22227466..22227843	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
IVF0015156.1-cds	IVF0015156.1-cds-chr10:22227466..22227843	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
IVF0015156.1	IVF0015156.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006259	DNA metabolic process
biological_process	GO:0006811	ion transport
molecular_function	GO:0016740	transferase activity