IVF0013645 (gene) Melon (IVF77) v1

Overview
NameIVF0013645
Typegene
OrganismCucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionProtein phosphatase
Locationchr06: 11898022 .. 11901116 (-)
RNA-Seq ExpressionIVF0013645
SyntenyIVF0013645
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
AGCCTGTTTTCTTTTTGCCTTTCGCTTTAACACAGAGACCTAACTTGCGCGACACTGCCGTTCGAACCACCACTCAAACGATGGATGATTGCGCTTGCATCAAACGATCGACGACGACTGCTACTACCTTCCCTCTCTGTACCCACCCTCCAAAGACGATTCAACTGCCTCAAACGATCGACGACTGCGCTAGCCTCAAACGATCGACAACGAAGCCGACGACGACTGCTACTGCCTTCCCTCTCCGTCGTCTCTCTGTCCCCACCCTCAAACGACGATTCTACTGCCTTAAACGATCGATGACGAAGCCCACCCTCAAACGCGACTGCTACTGCCTTCCCTCTCCATCGTCTCTCTGTCTCTCGTCGTTGCAACAACGAAACCCACCCTCAAACGACAACTGCTGCTGTTTCAAACGATCAATGACGAAGCCCACCCTTAAATGACGCCTGCTACTGTCTTCCCTCTCCGTCGTCTTTCTGTCTGTGGTAAGTTTTCATTCTACTTTGAAATGTTTTGTGTTAATGTATATTCTTTTTATTTTGATTTCATGTTAAAAGTTATTTTTATCCATTCTTATTCTTTTTGTTTCTTCTAGTAATGTTTGGGTGCTTTATTCATCTACTCAGGATGAAAGTGAACCATGAGGAGAATAGTTAGTTTTCGATATTATATCCTAATCTTGAAATGTTAACTGTCCAGTGAGCAAATATTGTTATTGATTGAAAAGTGGGTTGGTAGACTTTTCATTAGAAGCTAATGAGTATTAGGATGATGTTTAACTTAGTTGCTTGTATGGTTTATAAATTTCTTGATAATTTAAAGAATGGAAAGAGTTTGATTACTGTTGTAGTTTCTTATTCTTGGACAATGCGGTGTTTTCTTTCTATCTTATTTTTCAGTAATGGACAAATCTATGATGTGCTAGTTAAAAAAGTTAATAACGACCCTCAAATTCTTCTGAGAAAGGCTCATGCTGCTATGTCTGCTACTGGTTCAGCTACTGTGTAAATCTTCCTATCCGCTTAAAATTATAAGAAGTTTGATTTGAAGCATAAGCCTGCTACTTTTAAGCTTTATGATTTACCTTAGCTTTCCTTTCACTGGGATAGTCAGAATTATTGCAATGATGGAGAGGGATGGCATTCTCAAAATTGCTAATGTTGGAGATTATGGCATGCTCATAATTGCTCATGTTGGAGATTGTGGATTAAAGATTATTCGTAAAAGTACTGCCACTAATGTTTAATTTTATTTGCATTCAGCTTCAACTCTTTGGTTCTGAATCTTAATTTCTTTATATAAACATAAACTTAATTTCCTTAGGTCAAATTATATTTTCCACGTCTCCACAAGAACATTTCTTTGACTGCCCATATCAACTTAGCTCTGAACGGGTTGGCCAGACATTCCTTGATGCTACGGTATGATGATTTTCTATATCTATATTGATTTTGTTGAAGTATAATCACAAAGGGGTTTACATTTAGATGTCCCTGTTTTCATTAGAAAAGTGGGTTGGTAGTTCTGTTAATGAAACAAGAATCTCAATGGCTTCTGCAGCTTTTCTATTCAAGGGGTTTGTGTTTTTTTTTTTCCTTCTGAAATCAGTTTGATCATTATTGAATAGGGGAACTTCTTCACCTCCTGCATTTTTTTTTATTCTTCTCTTGGATTTGGAAATAGAGATTAGTACTTCTTTTATCCTCATTGAGATTCTTCATTCTCTTCCACTTTGAAAAGGACAAATTGAGAGGCTGATATTTTGAAAGCAATTGGTTTTCTGGGATATCCTCATTTCCTGCAGCTTGTTCTTAACCTGAATTAGATTCTTCTTCTAAAGCCTGAATGATAAACTTGTATTAGTCTGCTTCTCGTCACTGTTTTGTCTTATATACAAGTTATTTTTGGTCATTAATGGAGTGTTCTGTTTAGGTGTAGCCCAACAATAGATTTATAATTTGTTTTCTTCCTCTCGCTGTTTGTTTTTTCTTTTGGACAGAGAAAAACAAAAAGACTAAAAATTGAGTTATATATATTTTTCGTTATGGGTGGATTTGGATGTGTCCGTTTGATGATGATGATTAACTAGAAGTAAAAGTTTAGCTTCAACATTCTTTTGTTGGTCTTCCTTTTTCAGGTTGTGATGAAGAATGGAGGAACAACTGTACGAAGAGGGAGGCATGCACTGTCAAGAAAAGCAGAACAGGTTGGTTCAGTTTTAGACATCTCTCATTGCCCTCTTTTGGACCACAGCAGCCTTAAAAACTCCAAAACAATGGACAAACTATTATGCTCTAATCATACCTTGTTTTCTTCTCCCAGATTATTTTTCACTAATCCTTTTCATCATCTCTCAAATTACATCCACAGACAGATCCAACAAACGACATCAGGATCGAACTTGGAGAGGCAAGATTGACCTTGATGCTACACTAGTTACTGATGTACGAAGTTACAGGTTTGGCTTTGTTGTTATTGTTGTTTATGGGGTTCGTTCTTTCTTTGCTTATCTTTTCCATGTGGACAAGATTTTGTTTCTACTTGGAATGTGGCTGGTAAATCTCCACCTAACTGTTTGAATCTTGAAGACTGACTTCATGCTTCCCCTCCAGTCGATATCTATGTTCTCGGGTATTTACTGATACTTTACATGCAATCTCTTTCTGGTTATGTCTGATTACAAAAGTTAGGAAATAGTAAAGGAGAAGTTTAATGTTATTTACTCTTGTAGGTAGGAGCCATAATGTAAAATGAAGGAAATAAATTGTAATATGGTTTCTTTATTGATTTGCAGGAATCAATCTCAATTAGTATGTGTTTGCACCAAACAAGTTTCTGCTTCATCTGTACTCATATGATATTTGGTGTCTACATAATCATAAATTTCTATATGTTTTATAAATTTATGTAGGTGAATAGAATTGAGTCTTAACTAGAGGACTAAAGAACCAACGATGACAGTTAGTACACTTATGAACTTTGTTTGTATTTTGAGGGTTAATTTGTGTGGTTGGTACATTTAGACTGCAATAGTAATTAAGTAAATTACTGGCTACTTTATTTTGTCATTTTAGTACATTATGAATGAAAGT

mRNA sequence

AGCCTGTTTTCTTTTTGCCTTTCGCTTTAACACAGAGACCTAACTTGCGCGACACTGCCGTTCGAACCACCACTCAAACGATGGATGATTGCGCTTGCATCAAACGATCGACGACGACTGCTACTACCTTCCCTCTCTGTACCCACCCTCCAAAGACGATTCAACTGCCTCAAACGATCGACGACTGCGCTAGCCTCAAACGATCGACAACGAAGCCGACGACGACTGCTACTGCCTTCCCTCTCCGTCGTCTCTCTGTCCCCACCCTCAAACGACGATTCTACTGCCTTAAACGATCGATGACGAAGCCCACCCTCAAACGCGACTGCTACTGCCTTCCCTCTCCATCGTCTCTCTGTCTCTCGTCGTTGCAACAACGAAACCCACCCTCAAACGACAACTGCTGCTGTTTCAAACGATCAATGACGAAGCCCACCCTTAAATGACGCCTGCTACTGTCTTCCCTCTCCGTCGTCTTTCTGTCTGTGTAATGGACAAATCTATGATGTGCTAGTTAAAAAAGTTAATAACGACCCTCAAATTCTTCTGAGAAAGGCTCATGCTGCTATGTCTGCTACTGGTTCAGCTACTGTTCAGAATTATTGCAATGATGGAGAGGGATGGCATTCTCAAAATTGCTAATGTTGGAGATTATGGCATGCTCATAATTGCTCATGTTGGAGATTGTGGATTAAAGATTATTCGTAAAAGTACTGCCACTAATGTTTAATTTTATTTGCATTCAGCTTCAACTCTTTGGTTCTGAATCTTAATTTCTTTATATAAACATAAACTTAATTTCCTTAGGTCAAATTATATTTTCCACGTCTCCACAAGAACATTTCTTTGACTGCCCATATCAACTTAGCTCTGAACGGGTTGGCCAGACATTCCTTGATGCTACGGTTGTGATGAAGAATGGAGGAACAACTGTACGAAGAGGGAGGCATGCACTGTCAAGAAAAGCAGAACAGACAGATCCAACAAACGACATCAGGATCGAACTTGGAGAGGCAAGATTGACCTTGATGCTACACTAGTTACTGATGTACGAAGTTACAGGTTTGGCTTTGTTGTTATTGTTGTTTATGGGGTTCGTTCTTTCTTTGCTTATCTTTTCCATGTGGACAAGATTTTGTTTCTACTTGGAATGTGGCTGGTAAATCTCCACCTAACTGTTTGAATCTTGAAGACTGACTTCATGCTTCCCCTCCAGTCGATATCTATGTTCTCGGGAATCAATCTCAATTAGTATGTGTTTGCACCAAACAAGTTTCTGCTTCATCTGTACTCATATGATATTTGGTGTCTACATAATCATAAATTTCTATATGTTTTATAAATTTATGTAGGTGAATAGAATTGAGTCTTAACTAGAGGACTAAAGAACCAACGATGACAGTTAGTACACTTATGAACTTTGTTTGTATTTTGAGGGTTAATTTGTGTGGTTGGTACATTTAGACTGCAATAGTAATTAAGTAAATTACTGGCTACTTTATTTTGTCATTTTAGTACATTATGAATGAAAGT

Coding sequence (CDS)

ATGGATGATTGCGCTTGCATCAAACGATCGACGACGACTGCTACTACCTTCCCTCTCTGTACCCACCCTCCAAAGACGATTCAACTGCCTCAAACGATCGACGACTGCGCTAGCCTCAAACGATCGACAACGAAGCCGACGACGACTGCTACTGCCTTCCCTCTCCGTCGTCTCTCTGTCCCCACCCTCAAACGACGATTCTACTGCCTTAAACGATCGATGACGAAGCCCACCCTCAAACGCGACTGCTACTGCCTTCCCTCTCCATCGTCTCTCTGTCTCTCGTCGTTGCAACAACGAAACCCACCCTCAAACGACAACTGCTGCTGTTTCAAACGATCAATGACGAAGCCCACCCTTAAATGA

Protein sequence

MDDCACIKRSTTTATTFPLCTHPPKTIQLPQTIDDCASLKRSTTKPTTTATAFPLRRLSVPTLKRRFYCLKRSMTKPTLKRDCYCLPSPSSLCLSSLQQRNPPSNDNCCCFKRSMTKPTLK
Homology
[Close]
BLAST of IVF0013645 vs. ExPASy TrEMBL
Match: A0A5D3DU16 (Protein phosphatase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold236G00340 PE=3 SV=1)

HSP 1 Score: 185.3 bits (469), Expect = 1.5e-43
Identity = 90/91 (98.90%), Postives = 91/91 (100.00%), Query Frame = 0 

Query: 1  MDDCACIKRSTTTATTFPLCTHPPKTIQLPQTIDDCASLKRSTTKPTTTATAFPLRRLSV 60
          MDDCACIKRSTTTATTFPLCTHPPKTIQLPQTIDDCASLKRSTTKPTTTATAFPLRRLSV
Sbjct: 1  MDDCACIKRSTTTATTFPLCTHPPKTIQLPQTIDDCASLKRSTTKPTTTATAFPLRRLSV 60

Query: 61 PTLKRRFYCLKRSMTKPTLKRDCYCLPSPSS 92
          PTLKRRFYCLKRSMTKPTLKRDCYCLPSPS+
Sbjct: 61 PTLKRRFYCLKRSMTKPTLKRDCYCLPSPSN 91

[Close]
BLAST of IVF0013645 vs. NCBI nr
Match: KAA0048594.1 (putative protein phosphatase 2C 1 isoform X3 [Cucumis melo var. makuwa] >TYK27181.1 putative protein phosphatase 2C 1 isoform X3 [Cucumis melo var. makuwa])

HSP 1 Score: 185 bits (469), Expect = 1.35e-55
Identity = 90/91 (98.90%), Postives = 91/91 (100.00%), Query Frame = 0 

Query: 1  MDDCACIKRSTTTATTFPLCTHPPKTIQLPQTIDDCASLKRSTTKPTTTATAFPLRRLSV 60
          MDDCACIKRSTTTATTFPLCTHPPKTIQLPQTIDDCASLKRSTTKPTTTATAFPLRRLSV
Sbjct: 1  MDDCACIKRSTTTATTFPLCTHPPKTIQLPQTIDDCASLKRSTTKPTTTATAFPLRRLSV 60

Query: 61 PTLKRRFYCLKRSMTKPTLKRDCYCLPSPSS 91
          PTLKRRFYCLKRSMTKPTLKRDCYCLPSPS+
Sbjct: 61 PTLKRRFYCLKRSMTKPTLKRDCYCLPSPSN 91

The following BLAST results are available for this feature:
BLAST of IVF0013645 vs.
Match NameE-valueIdentityDescription
BLAST of IVF0013645 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5D3DU161.5e-4398.90Protein phosphatase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold236G... [more]
BLAST of IVF0013645 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0048594.11.35e-5598.90putative protein phosphatase 2C 1 isoform X3 [Cucumis melo var. makuwa] >TYK2718... [more]
BLAST of IVF0013645 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
IVF0013645.1IVF0013645.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006470 protein dephosphorylation
molecular_function GO:0046872 metal ion binding
molecular_function GO:0004722 protein serine/threonine phosphatase activity