IVF0013645.1 (mRNA) Melon (IVF77) v1

Overview
NameIVF0013645.1
TypemRNA
OrganismCucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionProtein phosphatase
Locationchr06: 11898022 .. 11901116 (-)
Sequence length1533
RNA-Seq ExpressionIVF0013645.1
SyntenyIVF0013645.1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
AGCCTGTTTTCTTTTTGCCTTTCGCTTTAACACAGAGACCTAACTTGCGCGACACTGCCGTTCGAACCACCACTCAAACGATGGATGATTGCGCTTGCATCAAACGATCGACGACGACTGCTACTACCTTCCCTCTCTGTACCCACCCTCCAAAGACGATTCAACTGCCTCAAACGATCGACGACTGCGCTAGCCTCAAACGATCGACAACGAAGCCGACGACGACTGCTACTGCCTTCCCTCTCCGTCGTCTCTCTGTCCCCACCCTCAAACGACGATTCTACTGCCTTAAACGATCGATGACGAAGCCCACCCTCAAACGCGACTGCTACTGCCTTCCCTCTCCATCGTCTCTCTGTCTCTCGTCGTTGCAACAACGAAACCCACCCTCAAACGACAACTGCTGCTGTTTCAAACGATCAATGACGAAGCCCACCCTTAAATGACGCCTGCTACTGTCTTCCCTCTCCGTCGTCTTTCTGTCTGTGGTAAGTTTTCATTCTACTTTGAAATGTTTTGTGTTAATGTATATTCTTTTTATTTTGATTTCATGTTAAAAGTTATTTTTATCCATTCTTATTCTTTTTGTTTCTTCTAGTAATGTTTGGGTGCTTTATTCATCTACTCAGGATGAAAGTGAACCATGAGGAGAATAGTTAGTTTTCGATATTATATCCTAATCTTGAAATGTTAACTGTCCAGTGAGCAAATATTGTTATTGATTGAAAAGTGGGTTGGTAGACTTTTCATTAGAAGCTAATGAGTATTAGGATGATGTTTAACTTAGTTGCTTGTATGGTTTATAAATTTCTTGATAATTTAAAGAATGGAAAGAGTTTGATTACTGTTGTAGTTTCTTATTCTTGGACAATGCGGTGTTTTCTTTCTATCTTATTTTTCAGTAATGGACAAATCTATGATGTGCTAGTTAAAAAAGTTAATAACGACCCTCAAATTCTTCTGAGAAAGGCTCATGCTGCTATGTCTGCTACTGGTTCAGCTACTGTGTAAATCTTCCTATCCGCTTAAAATTATAAGAAGTTTGATTTGAAGCATAAGCCTGCTACTTTTAAGCTTTATGATTTACCTTAGCTTTCCTTTCACTGGGATAGTCAGAATTATTGCAATGATGGAGAGGGATGGCATTCTCAAAATTGCTAATGTTGGAGATTATGGCATGCTCATAATTGCTCATGTTGGAGATTGTGGATTAAAGATTATTCGTAAAAGTACTGCCACTAATGTTTAATTTTATTTGCATTCAGCTTCAACTCTTTGGTTCTGAATCTTAATTTCTTTATATAAACATAAACTTAATTTCCTTAGGTCAAATTATATTTTCCACGTCTCCACAAGAACATTTCTTTGACTGCCCATATCAACTTAGCTCTGAACGGGTTGGCCAGACATTCCTTGATGCTACGGTATGATGATTTTCTATATCTATATTGATTTTGTTGAAGTATAATCACAAAGGGGTTTACATTTAGATGTCCCTGTTTTCATTAGAAAAGTGGGTTGGTAGTTCTGTTAATGAAACAAGAATCTCAATGGCTTCTGCAGCTTTTCTATTCAAGGGGTTTGTGTTTTTTTTTTTCCTTCTGAAATCAGTTTGATCATTATTGAATAGGGGAACTTCTTCACCTCCTGCATTTTTTTTTATTCTTCTCTTGGATTTGGAAATAGAGATTAGTACTTCTTTTATCCTCATTGAGATTCTTCATTCTCTTCCACTTTGAAAAGGACAAATTGAGAGGCTGATATTTTGAAAGCAATTGGTTTTCTGGGATATCCTCATTTCCTGCAGCTTGTTCTTAACCTGAATTAGATTCTTCTTCTAAAGCCTGAATGATAAACTTGTATTAGTCTGCTTCTCGTCACTGTTTTGTCTTATATACAAGTTATTTTTGGTCATTAATGGAGTGTTCTGTTTAGGTGTAGCCCAACAATAGATTTATAATTTGTTTTCTTCCTCTCGCTGTTTGTTTTTTCTTTTGGACAGAGAAAAACAAAAAGACTAAAAATTGAGTTATATATATTTTTCGTTATGGGTGGATTTGGATGTGTCCGTTTGATGATGATGATTAACTAGAAGTAAAAGTTTAGCTTCAACATTCTTTTGTTGGTCTTCCTTTTTCAGGTTGTGATGAAGAATGGAGGAACAACTGTACGAAGAGGGAGGCATGCACTGTCAAGAAAAGCAGAACAGGTTGGTTCAGTTTTAGACATCTCTCATTGCCCTCTTTTGGACCACAGCAGCCTTAAAAACTCCAAAACAATGGACAAACTATTATGCTCTAATCATACCTTGTTTTCTTCTCCCAGATTATTTTTCACTAATCCTTTTCATCATCTCTCAAATTACATCCACAGACAGATCCAACAAACGACATCAGGATCGAACTTGGAGAGGCAAGATTGACCTTGATGCTACACTAGTTACTGATGTACGAAGTTACAGGTTTGGCTTTGTTGTTATTGTTGTTTATGGGGTTCGTTCTTTCTTTGCTTATCTTTTCCATGTGGACAAGATTTTGTTTCTACTTGGAATGTGGCTGGTAAATCTCCACCTAACTGTTTGAATCTTGAAGACTGACTTCATGCTTCCCCTCCAGTCGATATCTATGTTCTCGGGTATTTACTGATACTTTACATGCAATCTCTTTCTGGTTATGTCTGATTACAAAAGTTAGGAAATAGTAAAGGAGAAGTTTAATGTTATTTACTCTTGTAGGTAGGAGCCATAATGTAAAATGAAGGAAATAAATTGTAATATGGTTTCTTTATTGATTTGCAGGAATCAATCTCAATTAGTATGTGTTTGCACCAAACAAGTTTCTGCTTCATCTGTACTCATATGATATTTGGTGTCTACATAATCATAAATTTCTATATGTTTTATAAATTTATGTAGGTGAATAGAATTGAGTCTTAACTAGAGGACTAAAGAACCAACGATGACAGTTAGTACACTTATGAACTTTGTTTGTATTTTGAGGGTTAATTTGTGTGGTTGGTACATTTAGACTGCAATAGTAATTAAGTAAATTACTGGCTACTTTATTTTGTCATTTTAGTACATTATGAATGAAAGT

mRNA sequence

AGCCTGTTTTCTTTTTGCCTTTCGCTTTAACACAGAGACCTAACTTGCGCGACACTGCCGTTCGAACCACCACTCAAACGATGGATGATTGCGCTTGCATCAAACGATCGACGACGACTGCTACTACCTTCCCTCTCTGTACCCACCCTCCAAAGACGATTCAACTGCCTCAAACGATCGACGACTGCGCTAGCCTCAAACGATCGACAACGAAGCCGACGACGACTGCTACTGCCTTCCCTCTCCGTCGTCTCTCTGTCCCCACCCTCAAACGACGATTCTACTGCCTTAAACGATCGATGACGAAGCCCACCCTCAAACGCGACTGCTACTGCCTTCCCTCTCCATCGTCTCTCTGTCTCTCGTCGTTGCAACAACGAAACCCACCCTCAAACGACAACTGCTGCTGTTTCAAACGATCAATGACGAAGCCCACCCTTAAATGACGCCTGCTACTGTCTTCCCTCTCCGTCGTCTTTCTGTCTGTGTAATGGACAAATCTATGATGTGCTAGTTAAAAAAGTTAATAACGACCCTCAAATTCTTCTGAGAAAGGCTCATGCTGCTATGTCTGCTACTGGTTCAGCTACTGTTCAGAATTATTGCAATGATGGAGAGGGATGGCATTCTCAAAATTGCTAATGTTGGAGATTATGGCATGCTCATAATTGCTCATGTTGGAGATTGTGGATTAAAGATTATTCGTAAAAGTACTGCCACTAATGTTTAATTTTATTTGCATTCAGCTTCAACTCTTTGGTTCTGAATCTTAATTTCTTTATATAAACATAAACTTAATTTCCTTAGGTCAAATTATATTTTCCACGTCTCCACAAGAACATTTCTTTGACTGCCCATATCAACTTAGCTCTGAACGGGTTGGCCAGACATTCCTTGATGCTACGGTTGTGATGAAGAATGGAGGAACAACTGTACGAAGAGGGAGGCATGCACTGTCAAGAAAAGCAGAACAGACAGATCCAACAAACGACATCAGGATCGAACTTGGAGAGGCAAGATTGACCTTGATGCTACACTAGTTACTGATGTACGAAGTTACAGGTTTGGCTTTGTTGTTATTGTTGTTTATGGGGTTCGTTCTTTCTTTGCTTATCTTTTCCATGTGGACAAGATTTTGTTTCTACTTGGAATGTGGCTGGTAAATCTCCACCTAACTGTTTGAATCTTGAAGACTGACTTCATGCTTCCCCTCCAGTCGATATCTATGTTCTCGGGAATCAATCTCAATTAGTATGTGTTTGCACCAAACAAGTTTCTGCTTCATCTGTACTCATATGATATTTGGTGTCTACATAATCATAAATTTCTATATGTTTTATAAATTTATGTAGGTGAATAGAATTGAGTCTTAACTAGAGGACTAAAGAACCAACGATGACAGTTAGTACACTTATGAACTTTGTTTGTATTTTGAGGGTTAATTTGTGTGGTTGGTACATTTAGACTGCAATAGTAATTAAGTAAATTACTGGCTACTTTATTTTGTCATTTTAGTACATTATGAATGAAAGT

Coding sequence (CDS)

ATGGATGATTGCGCTTGCATCAAACGATCGACGACGACTGCTACTACCTTCCCTCTCTGTACCCACCCTCCAAAGACGATTCAACTGCCTCAAACGATCGACGACTGCGCTAGCCTCAAACGATCGACAACGAAGCCGACGACGACTGCTACTGCCTTCCCTCTCCGTCGTCTCTCTGTCCCCACCCTCAAACGACGATTCTACTGCCTTAAACGATCGATGACGAAGCCCACCCTCAAACGCGACTGCTACTGCCTTCCCTCTCCATCGTCTCTCTGTCTCTCGTCGTTGCAACAACGAAACCCACCCTCAAACGACAACTGCTGCTGTTTCAAACGATCAATGACGAAGCCCACCCTTAAATGA

Protein sequence

MDDCACIKRSTTTATTFPLCTHPPKTIQLPQTIDDCASLKRSTTKPTTTATAFPLRRLSVPTLKRRFYCLKRSMTKPTLKRDCYCLPSPSSLCLSSLQQRNPPSNDNCCCFKRSMTKPTLK
Homology
[Close]
BLAST of IVF0013645.1 vs. ExPASy TrEMBL
Match: A0A5D3DU16 (Protein phosphatase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold236G00340 PE=3 SV=1)

HSP 1 Score: 185.3 bits (469), Expect = 1.5e-43
Identity = 90/91 (98.90%), Postives = 91/91 (100.00%), Query Frame = 0 

Query: 1  MDDCACIKRSTTTATTFPLCTHPPKTIQLPQTIDDCASLKRSTTKPTTTATAFPLRRLSV 60
          MDDCACIKRSTTTATTFPLCTHPPKTIQLPQTIDDCASLKRSTTKPTTTATAFPLRRLSV
Sbjct: 1  MDDCACIKRSTTTATTFPLCTHPPKTIQLPQTIDDCASLKRSTTKPTTTATAFPLRRLSV 60

Query: 61 PTLKRRFYCLKRSMTKPTLKRDCYCLPSPSS 92
          PTLKRRFYCLKRSMTKPTLKRDCYCLPSPS+
Sbjct: 61 PTLKRRFYCLKRSMTKPTLKRDCYCLPSPSN 91

[Close]
BLAST of IVF0013645.1 vs. NCBI nr
Match: KAA0048594.1 (putative protein phosphatase 2C 1 isoform X3 [Cucumis melo var. makuwa] >TYK27181.1 putative protein phosphatase 2C 1 isoform X3 [Cucumis melo var. makuwa])

HSP 1 Score: 185 bits (469), Expect = 1.35e-55
Identity = 90/91 (98.90%), Postives = 91/91 (100.00%), Query Frame = 0 

Query: 1  MDDCACIKRSTTTATTFPLCTHPPKTIQLPQTIDDCASLKRSTTKPTTTATAFPLRRLSV 60
          MDDCACIKRSTTTATTFPLCTHPPKTIQLPQTIDDCASLKRSTTKPTTTATAFPLRRLSV
Sbjct: 1  MDDCACIKRSTTTATTFPLCTHPPKTIQLPQTIDDCASLKRSTTKPTTTATAFPLRRLSV 60

Query: 61 PTLKRRFYCLKRSMTKPTLKRDCYCLPSPSS 91
          PTLKRRFYCLKRSMTKPTLKRDCYCLPSPS+
Sbjct: 61 PTLKRRFYCLKRSMTKPTLKRDCYCLPSPSN 91

The following BLAST results are available for this feature:
BLAST of IVF0013645.1 vs.
Match NameE-valueIdentityDescription
BLAST of IVF0013645.1 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5D3DU161.5e-4398.90Protein phosphatase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold236G... [more]
BLAST of IVF0013645.1 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0048594.11.35e-5598.90putative protein phosphatase 2C 1 isoform X3 [Cucumis melo var. makuwa] >TYK2718... [more]
BLAST of IVF0013645.1 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
IVF0013645IVF0013645gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
IVF0013645.1-exonIVF0013645.1-exon-chr06:11898022..11898319exon
IVF0013645.1-exonIVF0013645.1-exon-chr06:11898483..11898743exon
IVF0013645.1-exonIVF0013645.1-exon-chr06:11898908..11898976exon
IVF0013645.1-exonIVF0013645.1-exon-chr06:11899693..11900004exon
IVF0013645.1-exonIVF0013645.1-exon-chr06:11900110..11900214exon
IVF0013645.1-exonIVF0013645.1-exon-chr06:11900629..11901116exon


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
IVF0013645.1-three_prime_utrIVF0013645.1-three_prime_utr-chr06:11898022..11898319three_prime_UTR
IVF0013645.1-three_prime_utrIVF0013645.1-three_prime_utr-chr06:11898483..11898743three_prime_UTR
IVF0013645.1-three_prime_utrIVF0013645.1-three_prime_utr-chr06:11898908..11898976three_prime_UTR
IVF0013645.1-three_prime_utrIVF0013645.1-three_prime_utr-chr06:11899693..11900004three_prime_UTR
IVF0013645.1-three_prime_utrIVF0013645.1-three_prime_utr-chr06:11900110..11900214three_prime_UTR
IVF0013645.1-three_prime_utrIVF0013645.1-three_prime_utr-chr06:11900629..11900670three_prime_UTR


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
IVF0013645.1-cdsIVF0013645.1-cds-chr06:11900671..11901036CDS


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
IVF0013645.1-five_prime_utrIVF0013645.1-five_prime_utr-chr06:11901037..11901116five_prime_UTR


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
IVF0013645.1IVF0013645.1-proteinpolypeptide


GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006470 protein dephosphorylation
molecular_function GO:0046872 metal ion binding
molecular_function GO:0004722 protein serine/threonine phosphatase activity