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Sequences
The following sequences are available for this feature:
Gene sequence (with intron) Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below. ATGACTAAAAATCATGCAGGCAAAACTAGCTCACGCATATTTAGTGCCCGCCACGACAACAACCTCCATCCAGTCCGATCCAACCAATCCAATCCATCCATGATAGCATACTAAGCATACGACCCGAGGATAGCTCACACGTGATCCAATCCACAAGGAAACACGCGGCCAAAAGGAGCTCACGCATACTTAGCACCTACCACGGTAACAACATACCACTCCTATGTGCACATAGAGCCACCCAACCATGGGTTAAGCTAGGCCCGAAGCCATATCACAATCCTCCATCCACGTCCTCAACTAGGCTTAGGTTCTCGGATCTCCGGTCACGGCCTCTTTCAGCCACGGAATCCCCTGACAACCGTAGGTGGCGCTACAGAAACACATTCTCGTAG mRNA sequence ATGACTAAAAATCATGCAGGCAAAACTAGCTCACGCATATTTAGTGCCCGCCACGACAACAACCTCCATCCAGATAGCTCACACGTGATCCAATCCACAAGGAAACACGCGGCCAAAAGGAGCTCACGCATACTTAGCACCTACCACGGTAACAACATACCACTCCTATGTGCACATAGAGCCACCCAACCATGGGTTAAGCTAGGCCCGAAGCCATATCACAATCCTCCATCCACGTCCTCAACTAGGCTTAGGTTCTCGGATCTCCGGTCACGGCCTCTTTCAGCCACGGAATCCCCTGACAACCGTAGGTGGCGCTACAGAAACACATTCTCGTAG Coding sequence (CDS) ATGACTAAAAATCATGCAGGCAAAACTAGCTCACGCATATTTAGTGCCCGCCACGACAACAACCTCCATCCAGATAGCTCACACGTGATCCAATCCACAAGGAAACACGCGGCCAAAAGGAGCTCACGCATACTTAGCACCTACCACGGTAACAACATACCACTCCTATGTGCACATAGAGCCACCCAACCATGGGTTAAGCTAGGCCCGAAGCCATATCACAATCCTCCATCCACGTCCTCAACTAGGCTTAGGTTCTCGGATCTCCGGTCACGGCCTCTTTCAGCCACGGAATCCCCTGACAACCGTAGGTGGCGCTACAGAAACACATTCTCGTAG Protein sequence MTKNHAGKTSSRIFSARHDNNLHPDSSHVIQSTRKHAAKRSSRILSTYHGNNIPLLCAHRATQPWVKLGPKPYHNPPSTSSTRLRFSDLRSRPLSATESPDNRRWRYRNTFS
Homology
BLAST of IVF0011859 vs. ExPASy TrEMBL
Match: A0A5A7V094 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold72G00240 PE=4 SV=1) HSP 1 Score: 179.9 bits (455), Expect = 6.0e-42 Identity = 94/117 (80.34%), Postives = 97/117 (82.91%), Query Frame = 0
Query: 1 MTKNHAGKTSSRIFSARHDNNLHP--------------DSSHVIQSTRKHAAKRSSRILS 60
MTKNHA KTSSRIFS RH NNLHP DSSHVIQSTRKHAAKRSS IL+
Sbjct: 1 MTKNHAAKTSSRIFSTRH-NNLHPIQSIHDSILSIRPKDSSHVIQSTRKHAAKRSSCILN 60
Query: 61 TYHGNNIPLLCAHRATQPWVKLGPKPYHNPPSTSSTRLRFSDLRSRPLSATESPDNR 104
TYHGNNIPLLCAHRATQPW+KLGPKPYHNP STSS RL+FSDLRSRPLSATESPDNR
Sbjct: 61 TYHGNNIPLLCAHRATQPWIKLGPKPYHNPISTSSPRLKFSDLRSRPLSATESPDNR 116
BLAST of IVF0011859 vs. ExPASy TrEMBL
Match: A0A5D3CAY3 (Senescence-specific cysteine protease sag39 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold615G00450 PE=4 SV=1) HSP 1 Score: 139.0 bits (349), Expect = 1.2e-29 Identity = 68/76 (89.47%), Postives = 71/76 (93.42%), Query Frame = 0
Query: 29 VIQSTRKHAAKRSSRILSTYHGNNIPLLCAHRATQPWVKLGPKPYHNPPSTSSTRLRFSD 88
+IQSTRK AAK SSRILSTYHG+NIPLLCAHRATQPWVKLGPKPY+NPPSTSS RLRFSD
Sbjct: 1 MIQSTRKDAAKWSSRILSTYHGSNIPLLCAHRATQPWVKLGPKPYYNPPSTSSPRLRFSD 60
Query: 89 LRSRPLSATESPDNRR 105
LRS P SATESPDNRR
Sbjct: 61 LRSWPFSATESPDNRR 76
BLAST of IVF0011859 vs. NCBI nr
Match: KAA0060734.1 (ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]) HSP 1 Score: 180 bits (456), Expect = 8.72e-50 Identity = 94/117 (80.34%), Postives = 97/117 (82.91%), Query Frame = 0
Query: 1 MTKNHAGKTSSRIFSARHDNNLHP--------------DSSHVIQSTRKHAAKRSSRILS 60
MTKNHA KTSSRIFS RH NNLHP DSSHVIQSTRKHAAKRSS IL+
Sbjct: 1 MTKNHAAKTSSRIFSTRH-NNLHPIQSIHDSILSIRPKDSSHVIQSTRKHAAKRSSCILN 60
Query: 61 TYHGNNIPLLCAHRATQPWVKLGPKPYHNPPSTSSTRLRFSDLRSRPLSATESPDNR 103
TYHGNNIPLLCAHRATQPW+KLGPKPYHNP STSS RL+FSDLRSRPLSATESPDNR
Sbjct: 61 TYHGNNIPLLCAHRATQPWIKLGPKPYHNPISTSSPRLKFSDLRSRPLSATESPDNR 116
BLAST of IVF0011859 vs. NCBI nr
Match: TYK09013.1 (senescence-specific cysteine protease sag39 [Cucumis melo var. makuwa]) HSP 1 Score: 139 bits (350), Expect = 2.13e-38 Identity = 68/76 (89.47%), Postives = 71/76 (93.42%), Query Frame = 0
Query: 29 VIQSTRKHAAKRSSRILSTYHGNNIPLLCAHRATQPWVKLGPKPYHNPPSTSSTRLRFSD 88
+IQSTRK AAK SSRILSTYHG+NIPLLCAHRATQPWVKLGPKPY+NPPSTSS RLRFSD
Sbjct: 1 MIQSTRKDAAKWSSRILSTYHGSNIPLLCAHRATQPWVKLGPKPYYNPPSTSSPRLRFSD 60
Query: 89 LRSRPLSATESPDNRR 104
LRS P SATESPDNRR
Sbjct: 61 LRSWPFSATESPDNRR 76
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| Match Name | E-value | Identity | Description | |
|---|
| A0A5A7V094 | 6.0e-42 | 80.34 | Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold72... | [more] |
| A0A5D3CAY3 | 1.2e-29 | 89.47 | Senescence-specific cysteine protease sag39 OS=Cucumis melo var. makuwa OX=11946... | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| KAA0060734.1 | 8.72e-50 | 80.34 | ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa] | [more] |
| TYK09013.1 | 2.13e-38 | 89.47 | senescence-specific cysteine protease sag39 [Cucumis melo var. makuwa] | [more] |
| Match Name | E-value | Identity | Description | |
|---|
InterPro
Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25
| IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
|---|
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 1..40 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 1..17 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 68..112 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 18..32 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 74..96 |
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0006508 |
proteolysis |
| molecular_function |
GO:0003676 |
nucleic acid binding |
| molecular_function |
GO:0008233 |
peptidase activity |
| molecular_function |
GO:0008270 |
zinc ion binding |
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