IVF0011859.1 (mRNA) Melon (IVF77) v1

Overview


Name	IVF0011859.1
Type	mRNA
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	Senescence-specific cysteine protease sag39
Location	chr04: 4431940 .. 4432334 (+)
Sequence length	339
RNA-Seq Expression	IVF0011859.1
Synteny	IVF0011859.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACTAAAAATCATGCAGGCAAAACTAGCTCACGCATATTTAGTGCCCGCCACGACAACAACCTCCATCCAGTCCGATCCAACCAATCCAATCCATCCATGATAGCATACTAAGCATACGACCCGAGGATAGCTCACACGTGATCCAATCCACAAGGAAACACGCGGCCAAAAGGAGCTCACGCATACTTAGCACCTACCACGGTAACAACATACCACTCCTATGTGCACATAGAGCCACCCAACCATGGGTTAAGCTAGGCCCGAAGCCATATCACAATCCTCCATCCACGTCCTCAACTAGGCTTAGGTTCTCGGATCTCCGGTCACGGCCTCTTTCAGCCACGGAATCCCCTGACAACCGTAGGTGGCGCTACAGAAACACATTCTCGTAG

mRNA sequence

ATGACTAAAAATCATGCAGGCAAAACTAGCTCACGCATATTTAGTGCCCGCCACGACAACAACCTCCATCCAGATAGCTCACACGTGATCCAATCCACAAGGAAACACGCGGCCAAAAGGAGCTCACGCATACTTAGCACCTACCACGGTAACAACATACCACTCCTATGTGCACATAGAGCCACCCAACCATGGGTTAAGCTAGGCCCGAAGCCATATCACAATCCTCCATCCACGTCCTCAACTAGGCTTAGGTTCTCGGATCTCCGGTCACGGCCTCTTTCAGCCACGGAATCCCCTGACAACCGTAGGTGGCGCTACAGAAACACATTCTCGTAG

Coding sequence (CDS)

ATGACTAAAAATCATGCAGGCAAAACTAGCTCACGCATATTTAGTGCCCGCCACGACAACAACCTCCATCCAGATAGCTCACACGTGATCCAATCCACAAGGAAACACGCGGCCAAAAGGAGCTCACGCATACTTAGCACCTACCACGGTAACAACATACCACTCCTATGTGCACATAGAGCCACCCAACCATGGGTTAAGCTAGGCCCGAAGCCATATCACAATCCTCCATCCACGTCCTCAACTAGGCTTAGGTTCTCGGATCTCCGGTCACGGCCTCTTTCAGCCACGGAATCCCCTGACAACCGTAGGTGGCGCTACAGAAACACATTCTCGTAG

Protein sequence

MTKNHAGKTSSRIFSARHDNNLHPDSSHVIQSTRKHAAKRSSRILSTYHGNNIPLLCAHRATQPWVKLGPKPYHNPPSTSSTRLRFSDLRSRPLSATESPDNRRWRYRNTFS

Homology

[Close]

BLAST of IVF0011859.1 vs. ExPASy TrEMBL
Match: A0A5A7V094 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold72G00240 PE=4 SV=1)

HSP 1 Score: 179.9 bits (455), Expect = 6.0e-42
Identity = 94/117 (80.34%), Postives = 97/117 (82.91%), Query Frame = 0


Query: 1   MTKNHAGKTSSRIFSARHDNNLHP--------------DSSHVIQSTRKHAAKRSSRILS 60
           MTKNHA KTSSRIFS RH NNLHP              DSSHVIQSTRKHAAKRSS IL+
Sbjct: 1   MTKNHAAKTSSRIFSTRH-NNLHPIQSIHDSILSIRPKDSSHVIQSTRKHAAKRSSCILN 60

Query: 61  TYHGNNIPLLCAHRATQPWVKLGPKPYHNPPSTSSTRLRFSDLRSRPLSATESPDNR 104
           TYHGNNIPLLCAHRATQPW+KLGPKPYHNP STSS RL+FSDLRSRPLSATESPDNR
Sbjct: 61  TYHGNNIPLLCAHRATQPWIKLGPKPYHNPISTSSPRLKFSDLRSRPLSATESPDNR 116

[Close]

BLAST of IVF0011859.1 vs. ExPASy TrEMBL
Match: A0A5D3CAY3 (Senescence-specific cysteine protease sag39 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold615G00450 PE=4 SV=1)

HSP 1 Score: 139.0 bits (349), Expect = 1.2e-29
Identity = 68/76 (89.47%), Postives = 71/76 (93.42%), Query Frame = 0


Query: 29  VIQSTRKHAAKRSSRILSTYHGNNIPLLCAHRATQPWVKLGPKPYHNPPSTSSTRLRFSD 88
           +IQSTRK AAK SSRILSTYHG+NIPLLCAHRATQPWVKLGPKPY+NPPSTSS RLRFSD
Sbjct: 1   MIQSTRKDAAKWSSRILSTYHGSNIPLLCAHRATQPWVKLGPKPYYNPPSTSSPRLRFSD 60

Query: 89  LRSRPLSATESPDNRR 105
           LRS P SATESPDNRR
Sbjct: 61  LRSWPFSATESPDNRR 76

[Close]

BLAST of IVF0011859.1 vs. NCBI nr
Match: KAA0060734.1 (ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 180 bits (456), Expect = 8.72e-50
Identity = 94/117 (80.34%), Postives = 97/117 (82.91%), Query Frame = 0


Query: 1   MTKNHAGKTSSRIFSARHDNNLHP--------------DSSHVIQSTRKHAAKRSSRILS 60
           MTKNHA KTSSRIFS RH NNLHP              DSSHVIQSTRKHAAKRSS IL+
Sbjct: 1   MTKNHAAKTSSRIFSTRH-NNLHPIQSIHDSILSIRPKDSSHVIQSTRKHAAKRSSCILN 60

Query: 61  TYHGNNIPLLCAHRATQPWVKLGPKPYHNPPSTSSTRLRFSDLRSRPLSATESPDNR 103
           TYHGNNIPLLCAHRATQPW+KLGPKPYHNP STSS RL+FSDLRSRPLSATESPDNR
Sbjct: 61  TYHGNNIPLLCAHRATQPWIKLGPKPYHNPISTSSPRLKFSDLRSRPLSATESPDNR 116

[Close]

BLAST of IVF0011859.1 vs. NCBI nr
Match: TYK09013.1 (senescence-specific cysteine protease sag39 [Cucumis melo var. makuwa])

HSP 1 Score: 139 bits (350), Expect = 2.13e-38
Identity = 68/76 (89.47%), Postives = 71/76 (93.42%), Query Frame = 0


Query: 29  VIQSTRKHAAKRSSRILSTYHGNNIPLLCAHRATQPWVKLGPKPYHNPPSTSSTRLRFSD 88
           +IQSTRK AAK SSRILSTYHG+NIPLLCAHRATQPWVKLGPKPY+NPPSTSS RLRFSD
Sbjct: 1   MIQSTRKDAAKWSSRILSTYHGSNIPLLCAHRATQPWVKLGPKPYYNPPSTSSPRLRFSD 60

Query: 89  LRSRPLSATESPDNRR 104
           LRS P SATESPDNRR
Sbjct: 61  LRSWPFSATESPDNRR 76

The following BLAST results are available for this feature:

BLAST of IVF0011859.1 vs.


Match Name	E-value	Identity	Description

BLAST of IVF0011859.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7V094	6.0e-42	80.34	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold72...	[more]
A0A5D3CAY3	1.2e-29	89.47	Senescence-specific cysteine protease sag39 OS=Cucumis melo var. makuwa OX=11946...	[more]

BLAST of IVF0011859.1 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0060734.1	8.72e-50	80.34	ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]	[more]
TYK09013.1	2.13e-38	89.47	senescence-specific cysteine protease sag39 [Cucumis melo var. makuwa]	[more]

BLAST of IVF0011859.1 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..40
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..17
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 68..112
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 18..32
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 74..96

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
IVF0011859	IVF0011859	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
IVF0011859.1-exon	IVF0011859.1-exon-chr04:4431940..4432011	exon
IVF0011859.1-exon	IVF0011859.1-exon-chr04:4432068..4432334	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
IVF0011859.1-cds	IVF0011859.1-cds-chr04:4431940..4432011	CDS
IVF0011859.1-cds	IVF0011859.1-cds-chr04:4432068..4432334	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
IVF0011859.1	IVF0011859.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006508	proteolysis
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008233	peptidase activity
molecular_function	GO:0008270	zinc ion binding