Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACATATTGCGACGACGTTGAGGACGAGGACGAGGGGGACTCCACGTACGCAACGACCACCGCTTCAGAAGACATTCAGTACATTGAGACAACAAACGAGTGGTCTCAGTGGCGCGACGACCTAGCCGCATCGATGTTCACCGATTGGCAGTTCCGTAACGCTTAG
mRNA sequence
ATGACATATTGCGACGACGTTGAGGACGAGGACGAGGGGGACTCCACGTACGCAACGACCACCGCTTCAGAAGACATTCAGTACATTGAGACAACAAACGAGTGGTCTCAGTGGCGCGACGACCTAGCCGCATCGATGTTCACCGATTGGCAGTTCCGTAACGCTTAG
Coding sequence (CDS)
ATGACATATTGCGACGACGTTGAGGACGAGGACGAGGGGGACTCCACGTACGCAACGACCACCGCTTCAGAAGACATTCAGTACATTGAGACAACAAACGAGTGGTCTCAGTGGCGCGACGACCTAGCCGCATCGATGTTCACCGATTGGCAGTTCCGTAACGCTTAG
Protein sequence
MTYCDDVEDEDEGDSTYATTTASEDIQYIETTNEWSQWRDDLAASMFTDWQFRNA
Homology
BLAST of IVF0011720 vs. ExPASy TrEMBL
Match:
A0A5A7U2E3 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold264G001320 PE=3 SV=1)
HSP 1 Score: 116.7 bits (291), Expect = 3.1e-23
Identity = 55/55 (100.00%), Postives = 55/55 (100.00%), Query Frame = 0
Query: 1 MTYCDDVEDEDEGDSTYATTTASEDIQYIETTNEWSQWRDDLAASMFTDWQFRNA 56
MTYCDDVEDEDEGDSTYATTTASEDIQYIETTNEWSQWRDDLAASMFTDWQFRNA
Sbjct: 308 MTYCDDVEDEDEGDSTYATTTASEDIQYIETTNEWSQWRDDLAASMFTDWQFRNA 362
BLAST of IVF0011720 vs. ExPASy TrEMBL
Match:
A0A5A7TXM1 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold264G001020 PE=3 SV=1)
HSP 1 Score: 116.7 bits (291), Expect = 3.1e-23
Identity = 55/55 (100.00%), Postives = 55/55 (100.00%), Query Frame = 0
Query: 1 MTYCDDVEDEDEGDSTYATTTASEDIQYIETTNEWSQWRDDLAASMFTDWQFRNA 56
MTYCDDVEDEDEGDSTYATTTASEDIQYIETTNEWSQWRDDLAASMFTDWQFRNA
Sbjct: 308 MTYCDDVEDEDEGDSTYATTTASEDIQYIETTNEWSQWRDDLAASMFTDWQFRNA 362
BLAST of IVF0011720 vs. ExPASy TrEMBL
Match:
A0A5A7TWL4 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold133G001690 PE=3 SV=1)
HSP 1 Score: 116.7 bits (291), Expect = 3.1e-23
Identity = 55/55 (100.00%), Postives = 55/55 (100.00%), Query Frame = 0
Query: 1 MTYCDDVEDEDEGDSTYATTTASEDIQYIETTNEWSQWRDDLAASMFTDWQFRNA 56
MTYCDDVEDEDEGDSTYATTTASEDIQYIETTNEWSQWRDDLAASMFTDWQFRNA
Sbjct: 283 MTYCDDVEDEDEGDSTYATTTASEDIQYIETTNEWSQWRDDLAASMFTDWQFRNA 337
BLAST of IVF0011720 vs. ExPASy TrEMBL
Match:
A0A5A7UST8 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold288G00660 PE=3 SV=1)
HSP 1 Score: 116.7 bits (291), Expect = 3.1e-23
Identity = 55/55 (100.00%), Postives = 55/55 (100.00%), Query Frame = 0
Query: 1 MTYCDDVEDEDEGDSTYATTTASEDIQYIETTNEWSQWRDDLAASMFTDWQFRNA 56
MTYCDDVEDEDEGDSTYATTTASEDIQYIETTNEWSQWRDDLAASMFTDWQFRNA
Sbjct: 308 MTYCDDVEDEDEGDSTYATTTASEDIQYIETTNEWSQWRDDLAASMFTDWQFRNA 362
BLAST of IVF0011720 vs. ExPASy TrEMBL
Match:
A0A5A7V6J9 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold79G00810 PE=3 SV=1)
HSP 1 Score: 115.2 bits (287), Expect = 8.9e-23
Identity = 54/55 (98.18%), Postives = 55/55 (100.00%), Query Frame = 0
Query: 1 MTYCDDVEDEDEGDSTYATTTASEDIQYIETTNEWSQWRDDLAASMFTDWQFRNA 56
MTYCDDVEDEDEGDSTYATTTASEDIQYI+TTNEWSQWRDDLAASMFTDWQFRNA
Sbjct: 294 MTYCDDVEDEDEGDSTYATTTASEDIQYIKTTNEWSQWRDDLAASMFTDWQFRNA 348
BLAST of IVF0011720 vs. NCBI nr
Match:
KAA0038851.1 (retrotransposon protein [Cucumis melo var. makuwa])
HSP 1 Score: 113 bits (283), Expect = 1.30e-31
Identity = 54/55 (98.18%), Postives = 54/55 (98.18%), Query Frame = 0
Query: 1 MTYCDDVEDEDEGDSTYATTTASEDIQYIETTNEWSQWRDDLAASMFTDWQFRNA 55
MTYCDDVEDEDEGDSTYATTTASEDIQYIETTNEWSQWRDDLA SMFTDWQFRNA
Sbjct: 1 MTYCDDVEDEDEGDSTYATTTASEDIQYIETTNEWSQWRDDLATSMFTDWQFRNA 55
BLAST of IVF0011720 vs. NCBI nr
Match:
KAA0043059.1 (retrotransposon protein [Cucumis melo var. makuwa])
HSP 1 Score: 112 bits (279), Expect = 5.31e-31
Identity = 53/55 (96.36%), Postives = 55/55 (100.00%), Query Frame = 0
Query: 1 MTYCDDVEDEDEGDSTYATTTASEDIQYIETTNEWSQWRDDLAASMFTDWQFRNA 55
MTYCDDV+DEDEGDSTYATTTASEDIQYIETTNEWSQWRD+LAASMFTDWQFRNA
Sbjct: 1 MTYCDDVQDEDEGDSTYATTTASEDIQYIETTNEWSQWRDNLAASMFTDWQFRNA 55
BLAST of IVF0011720 vs. NCBI nr
Match:
KAA0041029.1 (retrotransposon protein [Cucumis melo var. makuwa])
HSP 1 Score: 112 bits (279), Expect = 2.26e-30
Identity = 54/55 (98.18%), Postives = 54/55 (98.18%), Query Frame = 0
Query: 1 MTYCDDVEDEDEGDSTYATTTASEDIQYIETTNEWSQWRDDLAASMFTDWQFRNA 55
MTYCDDVEDEDEGDSTYATTTASEDIQYIETTNEWSQW DDLAASMFTDWQFRNA
Sbjct: 53 MTYCDDVEDEDEGDSTYATTTASEDIQYIETTNEWSQWCDDLAASMFTDWQFRNA 107
BLAST of IVF0011720 vs. NCBI nr
Match:
KAA0065284.1 (retrotransposon protein [Cucumis melo var. makuwa])
HSP 1 Score: 111 bits (277), Expect = 3.03e-29
Identity = 53/55 (96.36%), Postives = 54/55 (98.18%), Query Frame = 0
Query: 1 MTYCDDVEDEDEGDSTYATTTASEDIQYIETTNEWSQWRDDLAASMFTDWQFRNA 55
MTYCDDVEDEDEGDSTYATTTASEDIQYIETTNEWSQWRD+LAASMFTDWQF NA
Sbjct: 120 MTYCDDVEDEDEGDSTYATTTASEDIQYIETTNEWSQWRDNLAASMFTDWQFHNA 174
BLAST of IVF0011720 vs. NCBI nr
Match:
KAA0047892.1 (retrotransposon protein [Cucumis melo var. makuwa])
HSP 1 Score: 115 bits (287), Expect = 3.60e-29
Identity = 55/55 (100.00%), Postives = 55/55 (100.00%), Query Frame = 0
Query: 1 MTYCDDVEDEDEGDSTYATTTASEDIQYIETTNEWSQWRDDLAASMFTDWQFRNA 55
MTYCDDVEDEDEGDSTYATTTASEDIQYIETTNEWSQWRDDLAASMFTDWQFRNA
Sbjct: 283 MTYCDDVEDEDEGDSTYATTTASEDIQYIETTNEWSQWRDDLAASMFTDWQFRNA 337
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| Match Name | E-value | Identity | Description | |
|---|
| A0A5A7U2E3 | 3.1e-23 | 100.00 | Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... | [more] |
| A0A5A7TXM1 | 3.1e-23 | 100.00 | Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... | [more] |
| A0A5A7TWL4 | 3.1e-23 | 100.00 | Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... | [more] |
| A0A5A7UST8 | 3.1e-23 | 100.00 | Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... | [more] |
| A0A5A7V6J9 | 8.9e-23 | 98.18 | Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... | [more] |
| Match Name | E-value | Identity | Description | |
|---|
