IVF0011720.1 (mRNA) Melon (IVF77) v1

Overview


Name	IVF0011720.1
Type	mRNA
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	Retrotransposon protein
Location	chr04: 22941824 .. 22941991 (+)
Sequence length	168
RNA-Seq Expression	IVF0011720.1
Synteny	IVF0011720.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACATATTGCGACGACGTTGAGGACGAGGACGAGGGGGACTCCACGTACGCAACGACCACCGCTTCAGAAGACATTCAGTACATTGAGACAACAAACGAGTGGTCTCAGTGGCGCGACGACCTAGCCGCATCGATGTTCACCGATTGGCAGTTCCGTAACGCTTAG

mRNA sequence

ATGACATATTGCGACGACGTTGAGGACGAGGACGAGGGGGACTCCACGTACGCAACGACCACCGCTTCAGAAGACATTCAGTACATTGAGACAACAAACGAGTGGTCTCAGTGGCGCGACGACCTAGCCGCATCGATGTTCACCGATTGGCAGTTCCGTAACGCTTAG

Coding sequence (CDS)

ATGACATATTGCGACGACGTTGAGGACGAGGACGAGGGGGACTCCACGTACGCAACGACCACCGCTTCAGAAGACATTCAGTACATTGAGACAACAAACGAGTGGTCTCAGTGGCGCGACGACCTAGCCGCATCGATGTTCACCGATTGGCAGTTCCGTAACGCTTAG

Protein sequence

MTYCDDVEDEDEGDSTYATTTASEDIQYIETTNEWSQWRDDLAASMFTDWQFRNA

Homology

[Close]

BLAST of IVF0011720.1 vs. ExPASy TrEMBL
Match: A0A5A7U2E3 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold264G001320 PE=3 SV=1)

HSP 1 Score: 116.7 bits (291), Expect = 3.1e-23
Identity = 55/55 (100.00%), Postives = 55/55 (100.00%), Query Frame = 0


Query: 1   MTYCDDVEDEDEGDSTYATTTASEDIQYIETTNEWSQWRDDLAASMFTDWQFRNA 56
           MTYCDDVEDEDEGDSTYATTTASEDIQYIETTNEWSQWRDDLAASMFTDWQFRNA
Sbjct: 308 MTYCDDVEDEDEGDSTYATTTASEDIQYIETTNEWSQWRDDLAASMFTDWQFRNA 362

[Close]

BLAST of IVF0011720.1 vs. ExPASy TrEMBL
Match: A0A5A7TXM1 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold264G001020 PE=3 SV=1)

HSP 1 Score: 116.7 bits (291), Expect = 3.1e-23
Identity = 55/55 (100.00%), Postives = 55/55 (100.00%), Query Frame = 0


Query: 1   MTYCDDVEDEDEGDSTYATTTASEDIQYIETTNEWSQWRDDLAASMFTDWQFRNA 56
           MTYCDDVEDEDEGDSTYATTTASEDIQYIETTNEWSQWRDDLAASMFTDWQFRNA
Sbjct: 308 MTYCDDVEDEDEGDSTYATTTASEDIQYIETTNEWSQWRDDLAASMFTDWQFRNA 362

[Close]

BLAST of IVF0011720.1 vs. ExPASy TrEMBL
Match: A0A5A7TWL4 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold133G001690 PE=3 SV=1)

HSP 1 Score: 116.7 bits (291), Expect = 3.1e-23
Identity = 55/55 (100.00%), Postives = 55/55 (100.00%), Query Frame = 0


Query: 1   MTYCDDVEDEDEGDSTYATTTASEDIQYIETTNEWSQWRDDLAASMFTDWQFRNA 56
           MTYCDDVEDEDEGDSTYATTTASEDIQYIETTNEWSQWRDDLAASMFTDWQFRNA
Sbjct: 283 MTYCDDVEDEDEGDSTYATTTASEDIQYIETTNEWSQWRDDLAASMFTDWQFRNA 337

[Close]

BLAST of IVF0011720.1 vs. ExPASy TrEMBL
Match: A0A5A7UST8 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold288G00660 PE=3 SV=1)

HSP 1 Score: 116.7 bits (291), Expect = 3.1e-23
Identity = 55/55 (100.00%), Postives = 55/55 (100.00%), Query Frame = 0


Query: 1   MTYCDDVEDEDEGDSTYATTTASEDIQYIETTNEWSQWRDDLAASMFTDWQFRNA 56
           MTYCDDVEDEDEGDSTYATTTASEDIQYIETTNEWSQWRDDLAASMFTDWQFRNA
Sbjct: 308 MTYCDDVEDEDEGDSTYATTTASEDIQYIETTNEWSQWRDDLAASMFTDWQFRNA 362

[Close]

BLAST of IVF0011720.1 vs. ExPASy TrEMBL
Match: A0A5A7V6J9 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold79G00810 PE=3 SV=1)

HSP 1 Score: 115.2 bits (287), Expect = 8.9e-23
Identity = 54/55 (98.18%), Postives = 55/55 (100.00%), Query Frame = 0


Query: 1   MTYCDDVEDEDEGDSTYATTTASEDIQYIETTNEWSQWRDDLAASMFTDWQFRNA 56
           MTYCDDVEDEDEGDSTYATTTASEDIQYI+TTNEWSQWRDDLAASMFTDWQFRNA
Sbjct: 294 MTYCDDVEDEDEGDSTYATTTASEDIQYIKTTNEWSQWRDDLAASMFTDWQFRNA 348

[Close]

BLAST of IVF0011720.1 vs. NCBI nr
Match: KAA0038851.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 113 bits (283), Expect = 1.30e-31
Identity = 54/55 (98.18%), Postives = 54/55 (98.18%), Query Frame = 0


Query: 1  MTYCDDVEDEDEGDSTYATTTASEDIQYIETTNEWSQWRDDLAASMFTDWQFRNA 55
          MTYCDDVEDEDEGDSTYATTTASEDIQYIETTNEWSQWRDDLA SMFTDWQFRNA
Sbjct: 1  MTYCDDVEDEDEGDSTYATTTASEDIQYIETTNEWSQWRDDLATSMFTDWQFRNA 55

[Close]

BLAST of IVF0011720.1 vs. NCBI nr
Match: KAA0043059.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 112 bits (279), Expect = 5.31e-31
Identity = 53/55 (96.36%), Postives = 55/55 (100.00%), Query Frame = 0


Query: 1  MTYCDDVEDEDEGDSTYATTTASEDIQYIETTNEWSQWRDDLAASMFTDWQFRNA 55
          MTYCDDV+DEDEGDSTYATTTASEDIQYIETTNEWSQWRD+LAASMFTDWQFRNA
Sbjct: 1  MTYCDDVQDEDEGDSTYATTTASEDIQYIETTNEWSQWRDNLAASMFTDWQFRNA 55

[Close]

BLAST of IVF0011720.1 vs. NCBI nr
Match: KAA0041029.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 112 bits (279), Expect = 2.26e-30
Identity = 54/55 (98.18%), Postives = 54/55 (98.18%), Query Frame = 0


Query: 1   MTYCDDVEDEDEGDSTYATTTASEDIQYIETTNEWSQWRDDLAASMFTDWQFRNA 55
           MTYCDDVEDEDEGDSTYATTTASEDIQYIETTNEWSQW DDLAASMFTDWQFRNA
Sbjct: 53  MTYCDDVEDEDEGDSTYATTTASEDIQYIETTNEWSQWCDDLAASMFTDWQFRNA 107

[Close]

BLAST of IVF0011720.1 vs. NCBI nr
Match: KAA0065284.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 111 bits (277), Expect = 3.03e-29
Identity = 53/55 (96.36%), Postives = 54/55 (98.18%), Query Frame = 0


Query: 1   MTYCDDVEDEDEGDSTYATTTASEDIQYIETTNEWSQWRDDLAASMFTDWQFRNA 55
           MTYCDDVEDEDEGDSTYATTTASEDIQYIETTNEWSQWRD+LAASMFTDWQF NA
Sbjct: 120 MTYCDDVEDEDEGDSTYATTTASEDIQYIETTNEWSQWRDNLAASMFTDWQFHNA 174

[Close]

BLAST of IVF0011720.1 vs. NCBI nr
Match: KAA0047892.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 115 bits (287), Expect = 3.60e-29
Identity = 55/55 (100.00%), Postives = 55/55 (100.00%), Query Frame = 0


Query: 1   MTYCDDVEDEDEGDSTYATTTASEDIQYIETTNEWSQWRDDLAASMFTDWQFRNA 55
           MTYCDDVEDEDEGDSTYATTTASEDIQYIETTNEWSQWRDDLAASMFTDWQFRNA
Sbjct: 283 MTYCDDVEDEDEGDSTYATTTASEDIQYIETTNEWSQWRDDLAASMFTDWQFRNA 337

The following BLAST results are available for this feature:

BLAST of IVF0011720.1 vs.


Match Name	E-value	Identity	Description

BLAST of IVF0011720.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7U2E3	3.1e-23	100.00	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5A7TXM1	3.1e-23	100.00	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5A7TWL4	3.1e-23	100.00	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5A7UST8	3.1e-23	100.00	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5A7V6J9	8.9e-23	98.18	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]

BLAST of IVF0011720.1 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0038851.1	1.30e-31	98.18	retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0043059.1	5.31e-31	96.36	retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0041029.1	2.26e-30	98.18	retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0065284.1	3.03e-29	96.36	retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0047892.1	3.60e-29	100.00	retrotransposon protein [Cucumis melo var. makuwa]	[more]

BLAST of IVF0011720.1 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25

Position :

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x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 54..55

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
IVF0011720	IVF0011720	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
IVF0011720.1-exon	IVF0011720.1-exon-chr04:22941824..22941991	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
IVF0011720.1-cds	IVF0011720.1-cds-chr04:22941824..22941991	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
IVF0011720.1	IVF0011720.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0046872	metal ion binding