IVF0006296 (gene) Melon (IVF77) v1

Overview


Name	IVF0006296
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	Unknown protein
Location	chr12: 10482122 .. 10482412 (+)
RNA-Seq Expression	IVF0006296
Synteny	IVF0006296

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGTGTGGGTTCAACTCCTCGAAGTATGAGCCCCGAAGATCAAAAGACTTATGACCAATACGATTCAAAGGGAAGAAACCATCGGGAGACCGCTTTTTATCCCACGACGAGAAAACTGAGTCAGGGGCTTACCCGCACGCCTTTTCTTGGTACGAACACCGAAAGACCTCGAGCTCAGCTTGTTTCCTTTGCTGCAAGTGCATTTCCATTGGTTACTGACACCAAACGAGCGTTCTTCACTCGTTGGAAGCATTGGCCACTTTTTAGACCATTTTGGATCACACCTTAA

mRNA sequence

ATGAGTGTGGGTTCAACTCCTCGAAGTATGAGCCCCGAAGATCAAAAGACTTATGACCAATACGATTCAAAGGGAAGAAACCATCGGGAGACCGCTTTTTATCCCACGACGAGAAAACTGAGTCAGGGGCTTACCCGCACGCCTTTTCTTGGTACGAACACCGAAAGACCTCGAGCTCAGCTTGTTTCCTTTGCTGCAAGTGCATTTCCATTGGTTACTGACACCAAACGAGCGTTCTTCACTCGTTGGAAGCATTGGCCACTTTTTAGACCATTTTGGATCACACCTTAA

Coding sequence (CDS)

ATGAGTGTGGGTTCAACTCCTCGAAGTATGAGCCCCGAAGATCAAAAGACTTATGACCAATACGATTCAAAGGGAAGAAACCATCGGGAGACCGCTTTTTATCCCACGACGAGAAAACTGAGTCAGGGGCTTACCCGCACGCCTTTTCTTGGTACGAACACCGAAAGACCTCGAGCTCAGCTTGTTTCCTTTGCTGCAAGTGCATTTCCATTGGTTACTGACACCAAACGAGCGTTCTTCACTCGTTGGAAGCATTGGCCACTTTTTAGACCATTTTGGATCACACCTTAA

Protein sequence

MSVGSTPRSMSPEDQKTYDQYDSKGRNHRETAFYPTTRKLSQGLTRTPFLGTNTERPRAQLVSFAASAFPLVTDTKRAFFTRWKHWPLFRPFWITP

Homology

[Close]

BLAST of IVF0006296 vs. ExPASy TrEMBL
Match: A0A5D3BQ75 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold2044G00560 PE=4 SV=1)

HSP 1 Score: 121.3 bits (303), Expect = 2.2e-24
Identity = 58/87 (66.67%), Postives = 69/87 (79.31%), Query Frame = 0


Query: 10 MSPEDQKTYDQYDSKGRNHRETAFYPTTRKLSQGLTRTPFLGTNTERPRAQLVSFAASAF 69
          MSP+D+KTYDQY +KGRN R+T FY  TRKLS   +R+ FLGT+TE PRA  VSFAASAF
Sbjct: 1  MSPDDRKTYDQYGAKGRNLRDTEFYTRTRKLSPRHSRSHFLGTSTESPRALPVSFAASAF 60

Query: 70 PLVTDTKRAFFTRWKHWPLFRPFWITP 97
           +V+DT RAF +RWKHWP F PFW+ P
Sbjct: 61 SVVSDTGRAFASRWKHWPSFGPFWVAP 87

[Close]

BLAST of IVF0006296 vs. ExPASy TrEMBL
Match: A0A5A7V5Z6 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold79G001940 PE=4 SV=1)

HSP 1 Score: 121.3 bits (303), Expect = 2.2e-24
Identity = 58/87 (66.67%), Postives = 69/87 (79.31%), Query Frame = 0


Query: 10 MSPEDQKTYDQYDSKGRNHRETAFYPTTRKLSQGLTRTPFLGTNTERPRAQLVSFAASAF 69
          MSP+D+KTYDQY +KGRN R+T FY  TRKLS   +R+ FLGT+TE PRA  VSFAASAF
Sbjct: 1  MSPDDRKTYDQYGAKGRNLRDTEFYTRTRKLSPRHSRSHFLGTSTESPRALPVSFAASAF 60

Query: 70 PLVTDTKRAFFTRWKHWPLFRPFWITP 97
           +V+DT RAF +RWKHWP F PFW+ P
Sbjct: 61 SVVSDTGRAFTSRWKHWPSFGPFWVAP 87

[Close]

BLAST of IVF0006296 vs. ExPASy TrEMBL
Match: A0A5A7VJF7 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold538G00010 PE=4 SV=1)

HSP 1 Score: 82.8 bits (203), Expect = 8.6e-13
Identity = 41/60 (68.33%), Postives = 47/60 (78.33%), Query Frame = 0


Query: 37 TRKLSQGLTRTPFLGTNTERPRAQLVSFAASAFPLVTDTKRAFFTRWKHWPLFRPFWITP 96
          TRKLS G +R+ FLGT+T  PRAQ VSFAASAFP+V+DT RAF TRWK  P F PFW+ P
Sbjct: 15 TRKLSPGHSRSRFLGTSTGSPRAQPVSFAASAFPVVSDTGRAFATRWKLRPSFGPFWVAP 74

[Close]

BLAST of IVF0006296 vs. ExPASy TrEMBL
Match: A0A5A7TUM9 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold19358G00010 PE=4 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 2.0e-06
Identity = 33/53 (62.26%), Postives = 39/53 (73.58%), Query Frame = 0


Query: 20  QYDSKGRNHRETAFYPTTRKLSQGLTRTPFLGTNTERPRAQLVSFAASAFPLV 73
           Q  SKG+  RETAFYP  RKL  G +R+ FLGT+T  PRA+ VSFAASAF +V
Sbjct: 175 QIRSKGKKPRETAFYPRMRKLGAGHSRSRFLGTSTGSPRAKPVSFAASAFSVV 227

[Close]

BLAST of IVF0006296 vs. NCBI nr
Match: TYK01208.1 (uncharacterized protein E5676_scaffold2044G00560 [Cucumis melo var. makuwa])

HSP 1 Score: 121 bits (304), Expect = 2.81e-30
Identity = 58/87 (66.67%), Postives = 69/87 (79.31%), Query Frame = 0


Query: 10 MSPEDQKTYDQYDSKGRNHRETAFYPTTRKLSQGLTRTPFLGTNTERPRAQLVSFAASAF 69
          MSP+D+KTYDQY +KGRN R+T FY  TRKLS   +R+ FLGT+TE PRA  VSFAASAF
Sbjct: 1  MSPDDRKTYDQYGAKGRNLRDTEFYTRTRKLSPRHSRSHFLGTSTESPRALPVSFAASAF 60

Query: 70 PLVTDTKRAFFTRWKHWPLFRPFWITP 96
           +V+DT RAF +RWKHWP F PFW+ P
Sbjct: 61 SVVSDTGRAFASRWKHWPSFGPFWVAP 87

[Close]

BLAST of IVF0006296 vs. NCBI nr
Match: KAA0062674.1 (uncharacterized protein E6C27_scaffold79G001940 [Cucumis melo var. makuwa])

HSP 1 Score: 121 bits (304), Expect = 4.69e-30
Identity = 58/87 (66.67%), Postives = 69/87 (79.31%), Query Frame = 0


Query: 10 MSPEDQKTYDQYDSKGRNHRETAFYPTTRKLSQGLTRTPFLGTNTERPRAQLVSFAASAF 69
          MSP+D+KTYDQY +KGRN R+T FY  TRKLS   +R+ FLGT+TE PRA  VSFAASAF
Sbjct: 1  MSPDDRKTYDQYGAKGRNLRDTEFYTRTRKLSPRHSRSHFLGTSTESPRALPVSFAASAF 60

Query: 70 PLVTDTKRAFFTRWKHWPLFRPFWITP 96
           +V+DT RAF +RWKHWP F PFW+ P
Sbjct: 61 SVVSDTGRAFTSRWKHWPSFGPFWVAP 87

[Close]

BLAST of IVF0006296 vs. NCBI nr
Match: KAA0065855.1 (hypothetical protein E6C27_scaffold538G00010 [Cucumis melo var. makuwa])

HSP 1 Score: 80.9 bits (198), Expect = 9.32e-17
Identity = 41/60 (68.33%), Postives = 47/60 (78.33%), Query Frame = 0


Query: 37 TRKLSQGLTRTPFLGTNTERPRAQLVSFAASAFPLVTDTKRAFFTRWKHWPLFRPFWITP 96
          TRKLS G +R+ FLGT+T  PRAQ VSFAASAFP+V+DT RAF TRWK  P F PFW+ P
Sbjct: 15 TRKLSPGHSRSRFLGTSTGSPRAQPVSFAASAFPVVSDTGRAFATRWKLRPSFGPFWVAP 74

[Close]

BLAST of IVF0006296 vs. NCBI nr
Match: KAA0046850.1 (hypothetical protein E6C27_scaffold19358G00010 [Cucumis melo var. makuwa])

HSP 1 Score: 61.6 bits (148), Expect = 7.39e-09
Identity = 33/53 (62.26%), Postives = 39/53 (73.58%), Query Frame = 0


Query: 20  QYDSKGRNHRETAFYPTTRKLSQGLTRTPFLGTNTERPRAQLVSFAASAFPLV 72
           Q  SKG+  RETAFYP  RKL  G +R+ FLGT+T  PRA+ VSFAASAF +V
Sbjct: 175 QIRSKGKKPRETAFYPRMRKLGAGHSRSRFLGTSTGSPRAKPVSFAASAFSVV 227

The following BLAST results are available for this feature:

BLAST of IVF0006296 vs.


Match Name	E-value	Identity	Description

BLAST of IVF0006296 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3BQ75	2.2e-24	66.67	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7V5Z6	2.2e-24	66.67	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5A7VJF7	8.6e-13	68.33	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5A7TUM9	2.0e-06	62.26	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]

BLAST of IVF0006296 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK01208.1	2.81e-30	66.67	uncharacterized protein E5676_scaffold2044G00560 [Cucumis melo var. makuwa]	[more]
KAA0062674.1	4.69e-30	66.67	uncharacterized protein E6C27_scaffold79G001940 [Cucumis melo var. makuwa]	[more]
KAA0065855.1	9.32e-17	68.33	hypothetical protein E6C27_scaffold538G00010 [Cucumis melo var. makuwa]	[more]
KAA0046850.1	7.39e-09	62.26	hypothetical protein E6C27_scaffold19358G00010 [Cucumis melo var. makuwa]	[more]

BLAST of IVF0006296 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25

Position :

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x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 15..33
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..34

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0006296.1	IVF0006296.1	mRNA