Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CTAAGACGGTCAAAGAACCTCCGTCAATAGCTTCCTCCCTCTATAAAAAAACCCTCAAAACCTCCATTTTCTGTATCCAATTTCACTCCCATCTTTTCATCCATCGACTCAACATTTCATCTTAGATTTTTCATCCTCAAATCCTTCACTATGACGCCGATTTCCGAAACCGATGCCGGCGAGATGTTCGTCAGAATCGCCATGTTCGTCTTTGTTCAGCTTCTTGTCTATTTGATTCTCTCCAAATCCTCCAACCTCTTCTCCAACGACCAGAAATTGAGATCTCTCAGCTTTAAACCGGCTCGTTCCGTCAGTATTCGCCGGTTTCTGGCTGCTCTTTCTGATCTTCCTCCCGGCGGTGAGCTTTCTCCGTCGTCTGTTCGTCGCGGTCGTTCCGATGACGGTTGCAAGTTGTAAAGAGTCGAATCGATCGGATCGAATTGAATTGGTTCCGATTGACATTTTCTGGGTTAGTCATGTAAAGTGAAAAAAGAGTAGGGGGTGATTTATGTTATTTGTTAAAAGTAGAGGGG
mRNA sequence
CTAAGACGGTCAAAGAACCTCCGTCAATAGCTTCCTCCCTCTATAAAAAAACCCTCAAAACCTCCATTTTCTGTATCCAATTTCACTCCCATCTTTTCATCCATCGACTCAACATTTCATCTTAGATTTTTCATCCTCAAATCCTTCACTATGACGCCGATTTCCGAAACCGATGCCGGCGAGATGTTCGTCAGAATCGCCATGTTCGTCTTTGTTCAGCTTCTTGTCTATTTGATTCTCTCCAAATCCTCCAACCTCTTCTCCAACGACCAGAAATTGAGATCTCTCAGCTTTAAACCGGCTCGTTCCGTCAGTATTCGCCGGTTTCTGGCTGCTCTTTCTGATCTTCCTCCCGGCGGTGAGCTTTCTCCGTCGTCTGTTCGTCGCGGTCGTTCCGATGACGGTTGCAAGTTGTAAAGAGTCGAATCGATCGGATCGAATTGAATTGGTTCCGATTGACATTTTCTGGGTTAGTCATGTAAAGTGAAAAAAGAGTAGGGGGTGATTTATGTTATTTGTTAAAAGTAGAGGGG
Coding sequence (CDS)
ATGACGCCGATTTCCGAAACCGATGCCGGCGAGATGTTCGTCAGAATCGCCATGTTCGTCTTTGTTCAGCTTCTTGTCTATTTGATTCTCTCCAAATCCTCCAACCTCTTCTCCAACGACCAGAAATTGAGATCTCTCAGCTTTAAACCGGCTCGTTCCGTCAGTATTCGCCGGTTTCTGGCTGCTCTTTCTGATCTTCCTCCCGGCGGTGAGCTTTCTCCGTCGTCTGTTCGTCGCGGTCGTTCCGATGACGGTTGCAAGTTGTAA
Protein sequence
MTPISETDAGEMFVRIAMFVFVQLLVYLILSKSSNLFSNDQKLRSLSFKPARSVSIRRFLAALSDLPPGGELSPSSVRRGRSDDGCKL
Homology
BLAST of IVF0003539 vs. ExPASy TrEMBL
Match:
A0A5A7UC63 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold148G00310 PE=4 SV=1)
HSP 1 Score: 169.1 bits (427), Expect = 8.3e-39
Identity = 88/88 (100.00%), Postives = 88/88 (100.00%), Query Frame = 0
Query: 1 MTPISETDAGEMFVRIAMFVFVQLLVYLILSKSSNLFSNDQKLRSLSFKPARSVSIRRFL 60
MTPISETDAGEMFVRIAMFVFVQLLVYLILSKSSNLFSNDQKLRSLSFKPARSVSIRRFL
Sbjct: 1 MTPISETDAGEMFVRIAMFVFVQLLVYLILSKSSNLFSNDQKLRSLSFKPARSVSIRRFL 60
Query: 61 AALSDLPPGGELSPSSVRRGRSDDGCKL 89
AALSDLPPGGELSPSSVRRGRSDDGCKL
Sbjct: 61 AALSDLPPGGELSPSSVRRGRSDDGCKL 88
BLAST of IVF0003539 vs. ExPASy TrEMBL
Match:
A0A1S3CFW1 (uncharacterized protein LOC103500281 OS=Cucumis melo OX=3656 GN=LOC103500281 PE=4 SV=1)
HSP 1 Score: 169.1 bits (427), Expect = 8.3e-39
Identity = 88/88 (100.00%), Postives = 88/88 (100.00%), Query Frame = 0
Query: 1 MTPISETDAGEMFVRIAMFVFVQLLVYLILSKSSNLFSNDQKLRSLSFKPARSVSIRRFL 60
MTPISETDAGEMFVRIAMFVFVQLLVYLILSKSSNLFSNDQKLRSLSFKPARSVSIRRFL
Sbjct: 1 MTPISETDAGEMFVRIAMFVFVQLLVYLILSKSSNLFSNDQKLRSLSFKPARSVSIRRFL 60
Query: 61 AALSDLPPGGELSPSSVRRGRSDDGCKL 89
AALSDLPPGGELSPSSVRRGRSDDGCKL
Sbjct: 61 AALSDLPPGGELSPSSVRRGRSDDGCKL 88
BLAST of IVF0003539 vs. ExPASy TrEMBL
Match:
A0A444DLD0 (Transmembrane 9 superfamily member OS=Ensete ventricosum OX=4639 GN=GW17_00038188 PE=3 SV=1)
HSP 1 Score: 97.1 bits (240), Expect = 4.0e-17
Identity = 49/81 (60.49%), Postives = 63/81 (77.78%), Query Frame = 0
Query: 4 ISETDAGEMFVRIAMFVFVQLLVYLILSKSSNLFSNDQKLRSLSFKPARSVSIRRFLAAL 63
I+ ++ +++ +F VQ LVYLIL+KSSN+FS +QKLRSLSF+PARSVS+RR LA L
Sbjct: 3 IATDGVSDVLMKVVVFAVVQALVYLILTKSSNVFSANQKLRSLSFRPARSVSVRRLLALL 62
Query: 64 SDLPPGGELSPSSVRRGRSDD 85
SD+PPGGE SPSS R +DD
Sbjct: 63 SDMPPGGETSPSSSSRSLADD 83
BLAST of IVF0003539 vs. ExPASy TrEMBL
Match:
A0A4S8IZ19 (Uncharacterized protein OS=Musa balbisiana OX=52838 GN=C4D60_Mb10t12480 PE=4 SV=1)
HSP 1 Score: 96.7 bits (239), Expect = 5.3e-17
Identity = 49/81 (60.49%), Postives = 63/81 (77.78%), Query Frame = 0
Query: 4 ISETDAGEMFVRIAMFVFVQLLVYLILSKSSNLFSNDQKLRSLSFKPARSVSIRRFLAAL 63
I+ ++ +++ +F VQ LVYLIL+KSSN+FS +QKLRSLSF+PARSVS+RR LA L
Sbjct: 3 IAMDGVSDVLMKVVVFAVVQALVYLILTKSSNVFSANQKLRSLSFRPARSVSVRRLLALL 62
Query: 64 SDLPPGGELSPSSVRRGRSDD 85
SD+PPGGE SPSS R +DD
Sbjct: 63 SDMPPGGETSPSSSSRSLADD 83
BLAST of IVF0003539 vs. ExPASy TrEMBL
Match:
M0RJ50 (Uncharacterized protein OS=Musa acuminata subsp. malaccensis OX=214687 PE=4 SV=1)
HSP 1 Score: 95.1 bits (235), Expect = 1.5e-16
Identity = 48/74 (64.86%), Postives = 61/74 (82.43%), Query Frame = 0
Query: 11 EMFVRIAMFVFVQLLVYLILSKSSNLFSNDQKLRSLSFKPARSVSIRRFLAALSDLPPGG 70
++ +++ +F VQ LVYLIL+KSSN+FS +QKLRSLSF+PARSVS+RR LA LSD+PPGG
Sbjct: 6 DVLMKVVVFAVVQALVYLILTKSSNVFSANQKLRSLSFRPARSVSVRRLLALLSDMPPGG 65
Query: 71 ELSPSSVRRGRSDD 85
E SPSS R +DD
Sbjct: 66 ETSPSSSSRSLADD 79
BLAST of IVF0003539 vs. NCBI nr
Match:
XP_008461750.1 (PREDICTED: uncharacterized protein LOC103500281 [Cucumis melo] >KAA0052808.1 uncharacterized protein E6C27_scaffold1614G00240 [Cucumis melo var. makuwa] >TYK04160.1 uncharacterized protein E5676_scaffold148G00310 [Cucumis melo var. makuwa])
HSP 1 Score: 167 bits (424), Expect = 3.95e-52
Identity = 88/88 (100.00%), Postives = 88/88 (100.00%), Query Frame = 0
Query: 1 MTPISETDAGEMFVRIAMFVFVQLLVYLILSKSSNLFSNDQKLRSLSFKPARSVSIRRFL 60
MTPISETDAGEMFVRIAMFVFVQLLVYLILSKSSNLFSNDQKLRSLSFKPARSVSIRRFL
Sbjct: 1 MTPISETDAGEMFVRIAMFVFVQLLVYLILSKSSNLFSNDQKLRSLSFKPARSVSIRRFL 60
Query: 61 AALSDLPPGGELSPSSVRRGRSDDGCKL 88
AALSDLPPGGELSPSSVRRGRSDDGCKL
Sbjct: 61 AALSDLPPGGELSPSSVRRGRSDDGCKL 88
BLAST of IVF0003539 vs. NCBI nr
Match:
XP_011651805.2 (uncharacterized protein LOC105434941 [Cucumis sativus])
HSP 1 Score: 145 bits (367), Expect = 2.42e-43
Identity = 80/95 (84.21%), Postives = 84/95 (88.42%), Query Frame = 0
Query: 1 MTPISETDAGEMFVRIAMFVFVQLLVYLILSKSSNLFSNDQKLRSLSFKPARSVSIRRFL 60
MTPI +TDAGEMFVRIAMFVF+QLLVYLILSKSSNLFSNDQK+RSLSFKPARSVSIRRFL
Sbjct: 1 MTPIFDTDAGEMFVRIAMFVFIQLLVYLILSKSSNLFSNDQKVRSLSFKPARSVSIRRFL 60
Query: 61 AALSDLPPGGELSPS-------SVRRGRSDDGCKL 88
AALSDLPPGGELSPS S RR RSDDG +L
Sbjct: 61 AALSDLPPGGELSPSTKVSTPSSARRDRSDDGGRL 95
BLAST of IVF0003539 vs. NCBI nr
Match:
XP_038905322.1 (uncharacterized protein LOC120091388 [Benincasa hispida])
HSP 1 Score: 134 bits (338), Expect = 6.41e-39
Identity = 75/95 (78.95%), Postives = 79/95 (83.16%), Query Frame = 0
Query: 1 MTPISETDAGEMFVRIAMFVFVQLLVYLILSKSSNLFSNDQKLRSLSFKPARSVSIRRFL 60
MTPI E+D EMFV+IAMF FVQLLVYLILSKSSNLFSNDQKLRSLSFKPARSVSIRRFL
Sbjct: 1 MTPILESDTCEMFVKIAMFAFVQLLVYLILSKSSNLFSNDQKLRSLSFKPARSVSIRRFL 60
Query: 61 AALSDLPPGGELSP-------SSVRRGRSDDGCKL 88
AALSDLPPGGE+SP SS RR SDDG +
Sbjct: 61 AALSDLPPGGEISPTPRVQTPSSFRRDHSDDGGRF 95
BLAST of IVF0003539 vs. NCBI nr
Match:
KAG7018107.1 (hypothetical protein SDJN02_19975, partial [Cucurbita argyrosperma subsp. argyrosperma])
HSP 1 Score: 122 bits (306), Expect = 4.84e-34
Identity = 70/91 (76.92%), Postives = 75/91 (82.42%), Query Frame = 0
Query: 1 MTPISETDAGEMFVRIAMFVFVQLLVYLILSKSSNLFSNDQKLRSLSFKPARSVSIRRFL 60
M I E D +F++IAMFVFVQ+LVYLILSKSSNLFSND+KLRSLSFKPARSVSIRR L
Sbjct: 1 MISILEFDVAGIFLKIAMFVFVQVLVYLILSKSSNLFSNDKKLRSLSFKPARSVSIRRLL 60
Query: 61 AALSDLPPGGELSPSS-------VRRGRSDD 84
AALSDLPPGGELSPSS VRR RSDD
Sbjct: 61 AALSDLPPGGELSPSSSVLTPSSVRRERSDD 91
BLAST of IVF0003539 vs. NCBI nr
Match:
KAG6581607.1 (hypothetical protein SDJN03_21609, partial [Cucurbita argyrosperma subsp. sororia])
HSP 1 Score: 122 bits (306), Expect = 1.36e-33
Identity = 70/91 (76.92%), Postives = 75/91 (82.42%), Query Frame = 0
Query: 1 MTPISETDAGEMFVRIAMFVFVQLLVYLILSKSSNLFSNDQKLRSLSFKPARSVSIRRFL 60
M I E D +F++IAMFVFVQ+LVYLILSKSSNLFSND+KLRSLSFKPARSVSIRR L
Sbjct: 1 MISILEYDVAGIFLKIAMFVFVQVLVYLILSKSSNLFSNDKKLRSLSFKPARSVSIRRLL 60
Query: 61 AALSDLPPGGELSPSS-------VRRGRSDD 84
AALSDLPPGGELSPSS VRR RSDD
Sbjct: 61 AALSDLPPGGELSPSSSVLTPSSVRRERSDD 91
BLAST of IVF0003539 vs. TAIR 10
Match:
AT2G31945.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G05575.1); Has 61 Blast hits to 61 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 61; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )
HSP 1 Score: 71.6 bits (174), Expect = 3.5e-13
Identity = 39/68 (57.35%), Postives = 50/68 (73.53%), Query Frame = 0
Query: 10 GEMFVRIAMFVFVQLLVYLILSKSSNLFSNDQKL-RSLSFKPARSVSIRRFLAALSDLPP 69
G M +++A+F VQ LVYLIL KSS +F+ L R+ SF+P RSVSIRR LAAL D+P
Sbjct: 6 GTMLMKVALFALVQGLVYLILLKSSRVFARSNSLKRAYSFRPMRSVSIRRILAALQDIPA 65
Query: 70 GGELSPSS 77
G ++SPSS
Sbjct: 66 GDDMSPSS 73
BLAST of IVF0003539 vs. TAIR 10
Match:
AT1G05575.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: anaerobic respiration; LOCATED IN: endomembrane system; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 9 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G31945.1); Has 63 Blast hits to 63 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 63; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )
HSP 1 Score: 70.5 bits (171), Expect = 7.8e-13
Identity = 36/67 (53.73%), Postives = 53/67 (79.10%), Query Frame = 0
Query: 12 MFVRIAMFVFVQLLVYLILSKSSNLFSNDQKL-RSLSFKPARSVSIRRFLAALSDLPPGG 71
M +++++F +Q LVYLILSKSS++FS + + R+ SF+ ARS+SIRR LA L D+P GG
Sbjct: 8 MLMKVSIFALIQGLVYLILSKSSSVFSTSKTMKRAYSFRSARSISIRRILAVLQDMPAGG 67
Query: 72 ELSPSSV 78
E+SPS++
Sbjct: 68 EMSPSAM 74
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| Match Name | E-value | Identity | Description | |
|---|
| A0A5A7UC63 | 8.3e-39 | 100.00 | Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... | [more] |
| A0A1S3CFW1 | 8.3e-39 | 100.00 | uncharacterized protein LOC103500281 OS=Cucumis melo OX=3656 GN=LOC103500281 PE=... | [more] |
| A0A444DLD0 | 4.0e-17 | 60.49 | Transmembrane 9 superfamily member OS=Ensete ventricosum OX=4639 GN=GW17_0003818... | [more] |
| A0A4S8IZ19 | 5.3e-17 | 60.49 | Uncharacterized protein OS=Musa balbisiana OX=52838 GN=C4D60_Mb10t12480 PE=4 SV=... | [more] |
| M0RJ50 | 1.5e-16 | 64.86 | Uncharacterized protein OS=Musa acuminata subsp. malaccensis OX=214687 PE=4 SV=1 | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| XP_008461750.1 | 3.95e-52 | 100.00 | PREDICTED: uncharacterized protein LOC103500281 [Cucumis melo] >KAA0052808.1 unc... | [more] |
| XP_011651805.2 | 2.42e-43 | 84.21 | uncharacterized protein LOC105434941 [Cucumis sativus] | [more] |
| XP_038905322.1 | 6.41e-39 | 78.95 | uncharacterized protein LOC120091388 [Benincasa hispida] | [more] |
| KAG7018107.1 | 4.84e-34 | 76.92 | hypothetical protein SDJN02_19975, partial [Cucurbita argyrosperma subsp. argyro... | [more] |
| KAG6581607.1 | 1.36e-33 | 76.92 | hypothetical protein SDJN03_21609, partial [Cucurbita argyrosperma subsp. sorori... | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| AT2G31945.1 | 3.5e-13 | 57.35 | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... | [more] |
| AT1G05575.1 | 7.8e-13 | 53.73 | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: anaerobi... | [more] |
