IVF0003539 (gene) Melon (IVF77) v1

Overview


Name	IVF0003539
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	Transcription termination factor like
Location	chr04: 23719810 .. 23720342 (+)
RNA-Seq Expression	IVF0003539
Synteny	IVF0003539

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CTAAGACGGTCAAAGAACCTCCGTCAATAGCTTCCTCCCTCTATAAAAAAACCCTCAAAACCTCCATTTTCTGTATCCAATTTCACTCCCATCTTTTCATCCATCGACTCAACATTTCATCTTAGATTTTTCATCCTCAAATCCTTCACTATGACGCCGATTTCCGAAACCGATGCCGGCGAGATGTTCGTCAGAATCGCCATGTTCGTCTTTGTTCAGCTTCTTGTCTATTTGATTCTCTCCAAATCCTCCAACCTCTTCTCCAACGACCAGAAATTGAGATCTCTCAGCTTTAAACCGGCTCGTTCCGTCAGTATTCGCCGGTTTCTGGCTGCTCTTTCTGATCTTCCTCCCGGCGGTGAGCTTTCTCCGTCGTCTGTTCGTCGCGGTCGTTCCGATGACGGTTGCAAGTTGTAAAGAGTCGAATCGATCGGATCGAATTGAATTGGTTCCGATTGACATTTTCTGGGTTAGTCATGTAAAGTGAAAAAAGAGTAGGGGGTGATTTATGTTATTTGTTAAAAGTAGAGGGG

mRNA sequence

CTAAGACGGTCAAAGAACCTCCGTCAATAGCTTCCTCCCTCTATAAAAAAACCCTCAAAACCTCCATTTTCTGTATCCAATTTCACTCCCATCTTTTCATCCATCGACTCAACATTTCATCTTAGATTTTTCATCCTCAAATCCTTCACTATGACGCCGATTTCCGAAACCGATGCCGGCGAGATGTTCGTCAGAATCGCCATGTTCGTCTTTGTTCAGCTTCTTGTCTATTTGATTCTCTCCAAATCCTCCAACCTCTTCTCCAACGACCAGAAATTGAGATCTCTCAGCTTTAAACCGGCTCGTTCCGTCAGTATTCGCCGGTTTCTGGCTGCTCTTTCTGATCTTCCTCCCGGCGGTGAGCTTTCTCCGTCGTCTGTTCGTCGCGGTCGTTCCGATGACGGTTGCAAGTTGTAAAGAGTCGAATCGATCGGATCGAATTGAATTGGTTCCGATTGACATTTTCTGGGTTAGTCATGTAAAGTGAAAAAAGAGTAGGGGGTGATTTATGTTATTTGTTAAAAGTAGAGGGG

Coding sequence (CDS)

ATGACGCCGATTTCCGAAACCGATGCCGGCGAGATGTTCGTCAGAATCGCCATGTTCGTCTTTGTTCAGCTTCTTGTCTATTTGATTCTCTCCAAATCCTCCAACCTCTTCTCCAACGACCAGAAATTGAGATCTCTCAGCTTTAAACCGGCTCGTTCCGTCAGTATTCGCCGGTTTCTGGCTGCTCTTTCTGATCTTCCTCCCGGCGGTGAGCTTTCTCCGTCGTCTGTTCGTCGCGGTCGTTCCGATGACGGTTGCAAGTTGTAA

Protein sequence

MTPISETDAGEMFVRIAMFVFVQLLVYLILSKSSNLFSNDQKLRSLSFKPARSVSIRRFLAALSDLPPGGELSPSSVRRGRSDDGCKL

Homology

[Close]

BLAST of IVF0003539 vs. ExPASy TrEMBL
Match: A0A5A7UC63 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold148G00310 PE=4 SV=1)

HSP 1 Score: 169.1 bits (427), Expect = 8.3e-39
Identity = 88/88 (100.00%), Postives = 88/88 (100.00%), Query Frame = 0


Query: 1  MTPISETDAGEMFVRIAMFVFVQLLVYLILSKSSNLFSNDQKLRSLSFKPARSVSIRRFL 60
          MTPISETDAGEMFVRIAMFVFVQLLVYLILSKSSNLFSNDQKLRSLSFKPARSVSIRRFL
Sbjct: 1  MTPISETDAGEMFVRIAMFVFVQLLVYLILSKSSNLFSNDQKLRSLSFKPARSVSIRRFL 60

Query: 61 AALSDLPPGGELSPSSVRRGRSDDGCKL 89
          AALSDLPPGGELSPSSVRRGRSDDGCKL
Sbjct: 61 AALSDLPPGGELSPSSVRRGRSDDGCKL 88

[Close]

BLAST of IVF0003539 vs. ExPASy TrEMBL
Match: A0A1S3CFW1 (uncharacterized protein LOC103500281 OS=Cucumis melo OX=3656 GN=LOC103500281 PE=4 SV=1)

HSP 1 Score: 169.1 bits (427), Expect = 8.3e-39
Identity = 88/88 (100.00%), Postives = 88/88 (100.00%), Query Frame = 0


Query: 1  MTPISETDAGEMFVRIAMFVFVQLLVYLILSKSSNLFSNDQKLRSLSFKPARSVSIRRFL 60
          MTPISETDAGEMFVRIAMFVFVQLLVYLILSKSSNLFSNDQKLRSLSFKPARSVSIRRFL
Sbjct: 1  MTPISETDAGEMFVRIAMFVFVQLLVYLILSKSSNLFSNDQKLRSLSFKPARSVSIRRFL 60

Query: 61 AALSDLPPGGELSPSSVRRGRSDDGCKL 89
          AALSDLPPGGELSPSSVRRGRSDDGCKL
Sbjct: 61 AALSDLPPGGELSPSSVRRGRSDDGCKL 88

[Close]

BLAST of IVF0003539 vs. ExPASy TrEMBL
Match: A0A444DLD0 (Transmembrane 9 superfamily member OS=Ensete ventricosum OX=4639 GN=GW17_00038188 PE=3 SV=1)

HSP 1 Score: 97.1 bits (240), Expect = 4.0e-17
Identity = 49/81 (60.49%), Postives = 63/81 (77.78%), Query Frame = 0


Query: 4  ISETDAGEMFVRIAMFVFVQLLVYLILSKSSNLFSNDQKLRSLSFKPARSVSIRRFLAAL 63
          I+     ++ +++ +F  VQ LVYLIL+KSSN+FS +QKLRSLSF+PARSVS+RR LA L
Sbjct: 3  IATDGVSDVLMKVVVFAVVQALVYLILTKSSNVFSANQKLRSLSFRPARSVSVRRLLALL 62

Query: 64 SDLPPGGELSPSSVRRGRSDD 85
          SD+PPGGE SPSS  R  +DD
Sbjct: 63 SDMPPGGETSPSSSSRSLADD 83

[Close]

BLAST of IVF0003539 vs. ExPASy TrEMBL
Match: A0A4S8IZ19 (Uncharacterized protein OS=Musa balbisiana OX=52838 GN=C4D60_Mb10t12480 PE=4 SV=1)

HSP 1 Score: 96.7 bits (239), Expect = 5.3e-17
Identity = 49/81 (60.49%), Postives = 63/81 (77.78%), Query Frame = 0


Query: 4  ISETDAGEMFVRIAMFVFVQLLVYLILSKSSNLFSNDQKLRSLSFKPARSVSIRRFLAAL 63
          I+     ++ +++ +F  VQ LVYLIL+KSSN+FS +QKLRSLSF+PARSVS+RR LA L
Sbjct: 3  IAMDGVSDVLMKVVVFAVVQALVYLILTKSSNVFSANQKLRSLSFRPARSVSVRRLLALL 62

Query: 64 SDLPPGGELSPSSVRRGRSDD 85
          SD+PPGGE SPSS  R  +DD
Sbjct: 63 SDMPPGGETSPSSSSRSLADD 83

[Close]

BLAST of IVF0003539 vs. ExPASy TrEMBL
Match: M0RJ50 (Uncharacterized protein OS=Musa acuminata subsp. malaccensis OX=214687 PE=4 SV=1)

HSP 1 Score: 95.1 bits (235), Expect = 1.5e-16
Identity = 48/74 (64.86%), Postives = 61/74 (82.43%), Query Frame = 0


Query: 11 EMFVRIAMFVFVQLLVYLILSKSSNLFSNDQKLRSLSFKPARSVSIRRFLAALSDLPPGG 70
          ++ +++ +F  VQ LVYLIL+KSSN+FS +QKLRSLSF+PARSVS+RR LA LSD+PPGG
Sbjct: 6  DVLMKVVVFAVVQALVYLILTKSSNVFSANQKLRSLSFRPARSVSVRRLLALLSDMPPGG 65

Query: 71 ELSPSSVRRGRSDD 85
          E SPSS  R  +DD
Sbjct: 66 ETSPSSSSRSLADD 79

[Close]

BLAST of IVF0003539 vs. NCBI nr
Match: XP_008461750.1 (PREDICTED: uncharacterized protein LOC103500281 [Cucumis melo] >KAA0052808.1 uncharacterized protein E6C27_scaffold1614G00240 [Cucumis melo var. makuwa] >TYK04160.1 uncharacterized protein E5676_scaffold148G00310 [Cucumis melo var. makuwa])

HSP 1 Score: 167 bits (424), Expect = 3.95e-52
Identity = 88/88 (100.00%), Postives = 88/88 (100.00%), Query Frame = 0


Query: 1  MTPISETDAGEMFVRIAMFVFVQLLVYLILSKSSNLFSNDQKLRSLSFKPARSVSIRRFL 60
          MTPISETDAGEMFVRIAMFVFVQLLVYLILSKSSNLFSNDQKLRSLSFKPARSVSIRRFL
Sbjct: 1  MTPISETDAGEMFVRIAMFVFVQLLVYLILSKSSNLFSNDQKLRSLSFKPARSVSIRRFL 60

Query: 61 AALSDLPPGGELSPSSVRRGRSDDGCKL 88
          AALSDLPPGGELSPSSVRRGRSDDGCKL
Sbjct: 61 AALSDLPPGGELSPSSVRRGRSDDGCKL 88

[Close]

BLAST of IVF0003539 vs. NCBI nr
Match: XP_011651805.2 (uncharacterized protein LOC105434941 [Cucumis sativus])

HSP 1 Score: 145 bits (367), Expect = 2.42e-43
Identity = 80/95 (84.21%), Postives = 84/95 (88.42%), Query Frame = 0


Query: 1  MTPISETDAGEMFVRIAMFVFVQLLVYLILSKSSNLFSNDQKLRSLSFKPARSVSIRRFL 60
          MTPI +TDAGEMFVRIAMFVF+QLLVYLILSKSSNLFSNDQK+RSLSFKPARSVSIRRFL
Sbjct: 1  MTPIFDTDAGEMFVRIAMFVFIQLLVYLILSKSSNLFSNDQKVRSLSFKPARSVSIRRFL 60

Query: 61 AALSDLPPGGELSPS-------SVRRGRSDDGCKL 88
          AALSDLPPGGELSPS       S RR RSDDG +L
Sbjct: 61 AALSDLPPGGELSPSTKVSTPSSARRDRSDDGGRL 95

[Close]

BLAST of IVF0003539 vs. NCBI nr
Match: XP_038905322.1 (uncharacterized protein LOC120091388 [Benincasa hispida])

HSP 1 Score: 134 bits (338), Expect = 6.41e-39
Identity = 75/95 (78.95%), Postives = 79/95 (83.16%), Query Frame = 0


Query: 1  MTPISETDAGEMFVRIAMFVFVQLLVYLILSKSSNLFSNDQKLRSLSFKPARSVSIRRFL 60
          MTPI E+D  EMFV+IAMF FVQLLVYLILSKSSNLFSNDQKLRSLSFKPARSVSIRRFL
Sbjct: 1  MTPILESDTCEMFVKIAMFAFVQLLVYLILSKSSNLFSNDQKLRSLSFKPARSVSIRRFL 60

Query: 61 AALSDLPPGGELSP-------SSVRRGRSDDGCKL 88
          AALSDLPPGGE+SP       SS RR  SDDG + 
Sbjct: 61 AALSDLPPGGEISPTPRVQTPSSFRRDHSDDGGRF 95

[Close]

BLAST of IVF0003539 vs. NCBI nr
Match: KAG7018107.1 (hypothetical protein SDJN02_19975, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 122 bits (306), Expect = 4.84e-34
Identity = 70/91 (76.92%), Postives = 75/91 (82.42%), Query Frame = 0


Query: 1  MTPISETDAGEMFVRIAMFVFVQLLVYLILSKSSNLFSNDQKLRSLSFKPARSVSIRRFL 60
          M  I E D   +F++IAMFVFVQ+LVYLILSKSSNLFSND+KLRSLSFKPARSVSIRR L
Sbjct: 1  MISILEFDVAGIFLKIAMFVFVQVLVYLILSKSSNLFSNDKKLRSLSFKPARSVSIRRLL 60

Query: 61 AALSDLPPGGELSPSS-------VRRGRSDD 84
          AALSDLPPGGELSPSS       VRR RSDD
Sbjct: 61 AALSDLPPGGELSPSSSVLTPSSVRRERSDD 91

[Close]

BLAST of IVF0003539 vs. NCBI nr
Match: KAG6581607.1 (hypothetical protein SDJN03_21609, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 122 bits (306), Expect = 1.36e-33
Identity = 70/91 (76.92%), Postives = 75/91 (82.42%), Query Frame = 0


Query: 1  MTPISETDAGEMFVRIAMFVFVQLLVYLILSKSSNLFSNDQKLRSLSFKPARSVSIRRFL 60
          M  I E D   +F++IAMFVFVQ+LVYLILSKSSNLFSND+KLRSLSFKPARSVSIRR L
Sbjct: 1  MISILEYDVAGIFLKIAMFVFVQVLVYLILSKSSNLFSNDKKLRSLSFKPARSVSIRRLL 60

Query: 61 AALSDLPPGGELSPSS-------VRRGRSDD 84
          AALSDLPPGGELSPSS       VRR RSDD
Sbjct: 61 AALSDLPPGGELSPSSSVLTPSSVRRERSDD 91

[Close]

BLAST of IVF0003539 vs. TAIR 10
Match: AT2G31945.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G05575.1); Has 61 Blast hits to 61 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 61; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 71.6 bits (174), Expect = 3.5e-13
Identity = 39/68 (57.35%), Postives = 50/68 (73.53%), Query Frame = 0


Query: 10 GEMFVRIAMFVFVQLLVYLILSKSSNLFSNDQKL-RSLSFKPARSVSIRRFLAALSDLPP 69
          G M +++A+F  VQ LVYLIL KSS +F+    L R+ SF+P RSVSIRR LAAL D+P 
Sbjct: 6  GTMLMKVALFALVQGLVYLILLKSSRVFARSNSLKRAYSFRPMRSVSIRRILAALQDIPA 65

Query: 70 GGELSPSS 77
          G ++SPSS
Sbjct: 66 GDDMSPSS 73

[Close]

BLAST of IVF0003539 vs. TAIR 10
Match: AT1G05575.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: anaerobic respiration; LOCATED IN: endomembrane system; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 9 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G31945.1); Has 63 Blast hits to 63 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 63; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 70.5 bits (171), Expect = 7.8e-13
Identity = 36/67 (53.73%), Postives = 53/67 (79.10%), Query Frame = 0


Query: 12 MFVRIAMFVFVQLLVYLILSKSSNLFSNDQKL-RSLSFKPARSVSIRRFLAALSDLPPGG 71
          M +++++F  +Q LVYLILSKSS++FS  + + R+ SF+ ARS+SIRR LA L D+P GG
Sbjct: 8  MLMKVSIFALIQGLVYLILSKSSSVFSTSKTMKRAYSFRSARSISIRRILAVLQDMPAGG 67

Query: 72 ELSPSSV 78
          E+SPS++
Sbjct: 68 EMSPSAM 74

The following BLAST results are available for this feature:

BLAST of IVF0003539 vs.


Match Name	E-value	Identity	Description

BLAST of IVF0003539 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7UC63	8.3e-39	100.00	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A1S3CFW1	8.3e-39	100.00	uncharacterized protein LOC103500281 OS=Cucumis melo OX=3656 GN=LOC103500281 PE=...	[more]
A0A444DLD0	4.0e-17	60.49	Transmembrane 9 superfamily member OS=Ensete ventricosum OX=4639 GN=GW17_0003818...	[more]
A0A4S8IZ19	5.3e-17	60.49	Uncharacterized protein OS=Musa balbisiana OX=52838 GN=C4D60_Mb10t12480 PE=4 SV=...	[more]
M0RJ50	1.5e-16	64.86	Uncharacterized protein OS=Musa acuminata subsp. malaccensis OX=214687 PE=4 SV=1	[more]

BLAST of IVF0003539 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008461750.1	3.95e-52	100.00	PREDICTED: uncharacterized protein LOC103500281 [Cucumis melo] >KAA0052808.1 unc...	[more]
XP_011651805.2	2.42e-43	84.21	uncharacterized protein LOC105434941 [Cucumis sativus]	[more]
XP_038905322.1	6.41e-39	78.95	uncharacterized protein LOC120091388 [Benincasa hispida]	[more]
KAG7018107.1	4.84e-34	76.92	hypothetical protein SDJN02_19975, partial [Cucurbita argyrosperma subsp. argyro...	[more]
KAG6581607.1	1.36e-33	76.92	hypothetical protein SDJN03_21609, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of IVF0003539 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G31945.1	3.5e-13	57.35	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT1G05575.1	7.8e-13	53.73	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: anaerobi...	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25

Position :

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x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 66..88
None	No IPR available	PANTHER	PTHR34268	OS01G0321850 PROTEIN	coord: 9..79
None	No IPR available	PANTHER	PTHR34268:SF16	OS02G0774200 PROTEIN	coord: 9..79

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0003539.1	IVF0003539.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0098588	bounding membrane of organelle
cellular_component	GO:0005737	cytoplasm
cellular_component	GO:0012505	endomembrane system
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0043231	intracellular membrane-bounded organelle