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Sequences
The following sequences are available for this feature:
Gene sequence (with intron) Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below. ATGGTGAGTGAAACACAAGTTTCTTCTTCTTCTTCTTCTTCTTCTTCAGACCCAACGCCCCTCGCGGTTCAGCTGCTCGTCGCTGTCTCCCGAAGTTGTCGCCTCTCCTTCCTTGTGCGCCGCCCGACCAAGCCAGCTGCTACACTACATTTCTCCTTCAGCTGCTATGTGTGGTAA mRNA sequence ATGGTGAGTGAAACACAAGTTTCTTCTTCTTCTTCTTCTTCTTCTTCAGACCCAACGCCCCTCGCGGTTCAGCTGCTCGTCGCTGTCTCCCGAAGTTGTCGCCTCTCCTTCCTTGTGCGCCGCCCGACCAAGCCAGCTGCTACACTACATTTCTCCTTCAGCTGCTATGTGTGGTAA Coding sequence (CDS) ATGGTGAGTGAAACACAAGTTTCTTCTTCTTCTTCTTCTTCTTCTTCAGACCCAACGCCCCTCGCGGTTCAGCTGCTCGTCGCTGTCTCCCGAAGTTGTCGCCTCTCCTTCCTTGTGCGCCGCCCGACCAAGCCAGCTGCTACACTACATTTCTCCTTCAGCTGCTATGTGTGGTAA Protein sequence MVSETQVSSSSSSSSSDPTPLAVQLLVAVSRSCRLSFLVRRPTKPAATLHFSFSCYVW
Homology
BLAST of IVF0002998 vs. ExPASy TrEMBL
Match: A0A5A7T0V4 (Putative DNA/RNA polymerases superfamily protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold379G00160 PE=4 SV=1) HSP 1 Score: 54.7 bits (130), Expect = 1.5e-04 Identity = 34/49 (69.39%), Postives = 39/49 (79.59%), Query Frame = 0
Query: 10 SSSSSSSDPTPLAVQLLVAVSRS-CRLSFLVRRPTKPAATLHFSFSCYV 58
S+ +++ DPTPLAVQ LVAV RS RLSFLV RPTK AAT HF+FS YV
Sbjct: 811 SAHTTAKDPTPLAVQPLVAVFRSRRRLSFLVCRPTKLAATPHFTFSYYV 859
BLAST of IVF0002998 vs. ExPASy TrEMBL
Match: A0A5D3CQ91 (Putative DNA/RNA polymerases superfamily protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold832G001650 PE=4 SV=1) HSP 1 Score: 54.7 bits (130), Expect = 1.5e-04 Identity = 34/49 (69.39%), Postives = 39/49 (79.59%), Query Frame = 0
Query: 10 SSSSSSSDPTPLAVQLLVAVSRS-CRLSFLVRRPTKPAATLHFSFSCYV 58
S+ +++ DPTPLAVQ LVAV RS RLSFLV RPTK AAT HF+FS YV
Sbjct: 742 SAHTTAKDPTPLAVQPLVAVFRSRRRLSFLVCRPTKLAATPHFTFSYYV 790
BLAST of IVF0002998 vs. NCBI nr
Match: TYK13961.1 (putative DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]) HSP 1 Score: 54.7 bits (130), Expect = 1.03e-06 Identity = 33/42 (78.57%), Postives = 34/42 (80.95%), Query Frame = 0
Query: 17 DPTPLAVQLLVAVSRSCR-LSFLVRRPTKPAATLHFSFSCYV 57
DPTPLAVQ LVAV RS R LSFLV RPTK AAT HF+FS YV
Sbjct: 749 DPTPLAVQPLVAVFRSRRRLSFLVCRPTKLAATPHFTFSYYV 790
BLAST of IVF0002998 vs. NCBI nr
Match: KAA0037114.1 (putative DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]) HSP 1 Score: 54.7 bits (130), Expect = 1.03e-06 Identity = 33/42 (78.57%), Postives = 34/42 (80.95%), Query Frame = 0
Query: 17 DPTPLAVQLLVAVSRSCR-LSFLVRRPTKPAATLHFSFSCYV 57
DPTPLAVQ LVAV RS R LSFLV RPTK AAT HF+FS YV
Sbjct: 818 DPTPLAVQPLVAVFRSRRRLSFLVCRPTKLAATPHFTFSYYV 859
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| Match Name | E-value | Identity | Description | |
|---|
| A0A5A7T0V4 | 1.5e-04 | 69.39 | Putative DNA/RNA polymerases superfamily protein OS=Cucumis melo var. makuwa OX=... | [more] |
| A0A5D3CQ91 | 1.5e-04 | 69.39 | Putative DNA/RNA polymerases superfamily protein OS=Cucumis melo var. makuwa OX=... | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| TYK13961.1 | 1.03e-06 | 78.57 | putative DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa] | [more] |
| KAA0037114.1 | 1.03e-06 | 78.57 | putative DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa] | [more] |
| Match Name | E-value | Identity | Description | |
|---|
InterPro
Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25
| IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
|---|
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 1..20 |
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0015074 |
DNA integration |
| molecular_function |
GO:0003676 |
nucleic acid binding |
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