IVF0002998.1 (mRNA) Melon (IVF77) v1

Overview


Name	IVF0002998.1
Type	mRNA
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	Unknown protein
Location	chr04: 7902364 .. 7902540 (+)
Sequence length	177
RNA-Seq Expression	IVF0002998.1
Synteny	IVF0002998.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTGAGTGAAACACAAGTTTCTTCTTCTTCTTCTTCTTCTTCTTCAGACCCAACGCCCCTCGCGGTTCAGCTGCTCGTCGCTGTCTCCCGAAGTTGTCGCCTCTCCTTCCTTGTGCGCCGCCCGACCAAGCCAGCTGCTACACTACATTTCTCCTTCAGCTGCTATGTGTGGTAA

mRNA sequence

ATGGTGAGTGAAACACAAGTTTCTTCTTCTTCTTCTTCTTCTTCTTCAGACCCAACGCCCCTCGCGGTTCAGCTGCTCGTCGCTGTCTCCCGAAGTTGTCGCCTCTCCTTCCTTGTGCGCCGCCCGACCAAGCCAGCTGCTACACTACATTTCTCCTTCAGCTGCTATGTGTGGTAA

Coding sequence (CDS)

ATGGTGAGTGAAACACAAGTTTCTTCTTCTTCTTCTTCTTCTTCTTCAGACCCAACGCCCCTCGCGGTTCAGCTGCTCGTCGCTGTCTCCCGAAGTTGTCGCCTCTCCTTCCTTGTGCGCCGCCCGACCAAGCCAGCTGCTACACTACATTTCTCCTTCAGCTGCTATGTGTGGTAA

Protein sequence

MVSETQVSSSSSSSSSDPTPLAVQLLVAVSRSCRLSFLVRRPTKPAATLHFSFSCYVW

Homology

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BLAST of IVF0002998.1 vs. ExPASy TrEMBL
Match: A0A5A7T0V4 (Putative DNA/RNA polymerases superfamily protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold379G00160 PE=4 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 1.5e-04
Identity = 34/49 (69.39%), Postives = 39/49 (79.59%), Query Frame = 0


Query: 10  SSSSSSSDPTPLAVQLLVAVSRS-CRLSFLVRRPTKPAATLHFSFSCYV 58
           S+ +++ DPTPLAVQ LVAV RS  RLSFLV RPTK AAT HF+FS YV
Sbjct: 811 SAHTTAKDPTPLAVQPLVAVFRSRRRLSFLVCRPTKLAATPHFTFSYYV 859

[Close]

BLAST of IVF0002998.1 vs. ExPASy TrEMBL
Match: A0A5D3CQ91 (Putative DNA/RNA polymerases superfamily protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold832G001650 PE=4 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 1.5e-04
Identity = 34/49 (69.39%), Postives = 39/49 (79.59%), Query Frame = 0


Query: 10  SSSSSSSDPTPLAVQLLVAVSRS-CRLSFLVRRPTKPAATLHFSFSCYV 58
           S+ +++ DPTPLAVQ LVAV RS  RLSFLV RPTK AAT HF+FS YV
Sbjct: 742 SAHTTAKDPTPLAVQPLVAVFRSRRRLSFLVCRPTKLAATPHFTFSYYV 790

[Close]

BLAST of IVF0002998.1 vs. NCBI nr
Match: TYK13961.1 (putative DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa])

HSP 1 Score: 54.7 bits (130), Expect = 1.03e-06
Identity = 33/42 (78.57%), Postives = 34/42 (80.95%), Query Frame = 0


Query: 17  DPTPLAVQLLVAVSRSCR-LSFLVRRPTKPAATLHFSFSCYV 57
           DPTPLAVQ LVAV RS R LSFLV RPTK AAT HF+FS YV
Sbjct: 749 DPTPLAVQPLVAVFRSRRRLSFLVCRPTKLAATPHFTFSYYV 790

[Close]

BLAST of IVF0002998.1 vs. NCBI nr
Match: KAA0037114.1 (putative DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa])

HSP 1 Score: 54.7 bits (130), Expect = 1.03e-06
Identity = 33/42 (78.57%), Postives = 34/42 (80.95%), Query Frame = 0


Query: 17  DPTPLAVQLLVAVSRSCR-LSFLVRRPTKPAATLHFSFSCYV 57
           DPTPLAVQ LVAV RS R LSFLV RPTK AAT HF+FS YV
Sbjct: 818 DPTPLAVQPLVAVFRSRRRLSFLVCRPTKLAATPHFTFSYYV 859

The following BLAST results are available for this feature:

BLAST of IVF0002998.1 vs.


Match Name	E-value	Identity	Description

BLAST of IVF0002998.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7T0V4	1.5e-04	69.39	Putative DNA/RNA polymerases superfamily protein OS=Cucumis melo var. makuwa OX=...	[more]
A0A5D3CQ91	1.5e-04	69.39	Putative DNA/RNA polymerases superfamily protein OS=Cucumis melo var. makuwa OX=...	[more]

BLAST of IVF0002998.1 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK13961.1	1.03e-06	78.57	putative DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]	[more]
KAA0037114.1	1.03e-06	78.57	putative DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]	[more]

BLAST of IVF0002998.1 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25

Position :

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x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..20

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
IVF0002998	IVF0002998	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
IVF0002998.1-exon	IVF0002998.1-exon-chr04:7902364..7902540	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
IVF0002998.1-cds	IVF0002998.1-cds-chr04:7902364..7902540	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
IVF0002998.1	IVF0002998.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
molecular_function	GO:0003676	nucleic acid binding