Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAATCTGCTTGGAGACGATCCTCTTGTACCTCCTCGGAATAACGTCCAACAAAATGGAGATCAACAACCACAACCACAACCAGTTGTAGACCCACGAAACCCCATCTTCATAGCAGATGATAGGGACAGAGCCATCAGAGATTATGCTGCGCCCACATTTCAAACTTTGGACACTAGCATCCTCGATCCACCAATTGATGTGCCCACATTTGAAATGAAACCACTTATGTTTCAAAACTCATTTGGTCAATTTGCCCAGCTACCTAATGAAGACCCCCACAAACGTCTTATACTTTTTATGAGAATCTACCATTCGTTTAAAGTTAATGGTGTTTCTGAAGAGGCATTGAGACTTAAGTTGTTTCCTTACTTTTTGCAAGGAGATGCTAAAGCATGA
mRNA sequence
ATGAATCTGCTTGGAGACGATCCTCTTGTACCTCCTCGGAATAACGTCCAACAAAATGGAGATCAACAACCACAACCACAACCAGTTGTAGACCCACGAAACCCCATCTTCATAGCAGATGATAGGGACAGAGCCATCAGAGATTATGCTGCGCCCACATTTCAAACTTTGGACACTAGCATCCTCGATCCACCAATTGATGTGCCCACATTTGAAATGAAACCACTTATGTTTCAAAACTCATTTGGTCAATTTGCCCAGCTACCTAATGAAGACCCCCACAAACGTCTTATACTTTTTATGAGAATCTACCATTCGTTTAAAGTTAATGGTGTTTCTGAAGAGGCATTGAGACTTAAGTTGTTTCCTTACTTTTTGCAAGGAGATGCTAAAGCATGA
Coding sequence (CDS)
ATGAATCTGCTTGGAGACGATCCTCTTGTACCTCCTCGGAATAACGTCCAACAAAATGGAGATCAACAACCACAACCACAACCAGTTGTAGACCCACGAAACCCCATCTTCATAGCAGATGATAGGGACAGAGCCATCAGAGATTATGCTGCGCCCACATTTCAAACTTTGGACACTAGCATCCTCGATCCACCAATTGATGTGCCCACATTTGAAATGAAACCACTTATGTTTCAAAACTCATTTGGTCAATTTGCCCAGCTACCTAATGAAGACCCCCACAAACGTCTTATACTTTTTATGAGAATCTACCATTCGTTTAAAGTTAATGGTGTTTCTGAAGAGGCATTGAGACTTAAGTTGTTTCCTTACTTTTTGCAAGGAGATGCTAAAGCATGA
Protein sequence
MNLLGDDPLVPPRNNVQQNGDQQPQPQPVVDPRNPIFIADDRDRAIRDYAAPTFQTLDTSILDPPIDVPTFEMKPLMFQNSFGQFAQLPNEDPHKRLILFMRIYHSFKVNGVSEEALRLKLFPYFLQGDAKA
Homology
BLAST of HG10021649 vs. NCBI nr
Match:
ERM93404.1 (hypothetical protein AMTR_s04947p00003620 [Amborella trichopoda])
HSP 1 Score: 114.0 bits (284), Expect = 9.8e-22
Identity = 55/101 (54.46%), Postives = 71/101 (70.30%), Query Frame = 0
Query: 34 NPIFIADDRDRAIRDYAAPTFQTLDTSILDPPIDVPTFEMKPLMFQ--NSFGQFAQLPNE 93
NPI +ADDR RAIR+YAAP F L+ I+ P I P FE+KP+MFQ + GQF+ +P E
Sbjct: 11 NPIILADDRARAIREYAAPMFNELNPGIVRPEIQAPQFELKPVMFQMLQTVGQFSGMPTE 70
Query: 94 DPHKRLILFMRIYHSFKVNGVSEEALRLKLFPYFLQGDAKA 133
DPH L F+ + SFK+ GVSEE LRLKLFP+ L+ A++
Sbjct: 71 DPHLHLRSFLEVSDSFKIQGVSEEVLRLKLFPFSLRDRARS 111
BLAST of HG10021649 vs. NCBI nr
Match:
XP_017216983.1 (PREDICTED: uncharacterized protein LOC108194534 [Daucus carota subsp. sativus])
HSP 1 Score: 113.6 bits (283), Expect = 1.3e-21
Identity = 55/97 (56.70%), Postives = 70/97 (72.16%), Query Frame = 0
Query: 37 FIADDRDRAIRDYAAPTFQTLDTSILDPPIDVPTFEMKPLMFQ--NSFGQFAQLPNEDPH 96
FI DD+DRAIR YAAP F+ L++ I+ P I FE+KP+MFQ + GQF+ +P EDPH
Sbjct: 53 FIVDDKDRAIRQYAAPRFEELNSGIIRPNIQATQFELKPVMFQMLQTIGQFSGMPTEDPH 112
Query: 97 KRLILFMRIYHSFKVNGVSEEALRLKLFPYFLQGDAK 132
L LFM I SFK GV+E+ALRLKLFPYF++ A+
Sbjct: 113 LHLRLFMEISDSFKFQGVTEDALRLKLFPYFVRDRAR 149
BLAST of HG10021649 vs. NCBI nr
Match:
ERM93434.1 (hypothetical protein AMTR_s03373p00007640 [Amborella trichopoda])
HSP 1 Score: 112.8 bits (281), Expect = 2.2e-21
Identity = 56/101 (55.45%), Postives = 71/101 (70.30%), Query Frame = 0
Query: 34 NPIFIADDRDRAIRDYAAPTFQTLDTSILDPPIDVPTFEMKPLMFQ--NSFGQFAQLPNE 93
NPI +ADDR RAIR+YAAP F L++ I+ P I P FE+KP+MFQ + GQF P E
Sbjct: 13 NPIALADDRARAIREYAAPMFNELNSGIVRPEIQAPHFELKPVMFQMLQTVGQFGGSPTE 72
Query: 94 DPHKRLILFMRIYHSFKVNGVSEEALRLKLFPYFLQGDAKA 133
DPH + F+ + SFK+ GVSEEALRLKLFP+ L+ A+A
Sbjct: 73 DPHLHIRSFLEVSDSFKLQGVSEEALRLKLFPFSLRDRARA 113
BLAST of HG10021649 vs. NCBI nr
Match:
XP_030497803.1 (uncharacterized protein LOC115713460 [Cannabis sativa])
HSP 1 Score: 112.5 bits (280), Expect = 2.9e-21
Identity = 56/101 (55.45%), Postives = 70/101 (69.31%), Query Frame = 0
Query: 34 NPIFIADDRDRAIRDYAAPTFQTLDTSILDPPIDVPTFEMKPLMFQ--NSFGQFAQLPNE 93
NPI +ADDR RAIR+YAAP F L+ I+ P I P FE+KP+MFQ + GQF P E
Sbjct: 15 NPIALADDRTRAIREYAAPMFNELNPGIVRPEIQAPHFELKPVMFQMLQTVGQFGGSPTE 74
Query: 94 DPHKRLILFMRIYHSFKVNGVSEEALRLKLFPYFLQGDAKA 133
DPH + F+ + SFK+ GVSEEALRLKLFP+ L+ A+A
Sbjct: 75 DPHLHIRSFLEVSDSFKLQGVSEEALRLKLFPFSLRDRARA 115
BLAST of HG10021649 vs. NCBI nr
Match:
XP_030508936.1 (uncharacterized protein LOC115723589 [Cannabis sativa])
HSP 1 Score: 112.1 bits (279), Expect = 3.7e-21
Identity = 56/101 (55.45%), Postives = 70/101 (69.31%), Query Frame = 0
Query: 34 NPIFIADDRDRAIRDYAAPTFQTLDTSILDPPIDVPTFEMKPLMFQ--NSFGQFAQLPNE 93
NPI +ADDR RAIR+YAAP F L+ I+ P I P FE+KP+MFQ + GQF P E
Sbjct: 50 NPIALADDRARAIREYAAPMFNELNPGIVRPEIQAPHFELKPVMFQMLQTVGQFGGSPTE 109
Query: 94 DPHKRLILFMRIYHSFKVNGVSEEALRLKLFPYFLQGDAKA 133
DPH + F+ + SFK+ GVSEEALRLKLFP+ L+ A+A
Sbjct: 110 DPHLHIRSFLEVSDSFKLQGVSEEALRLKLFPFSLRDRARA 150
BLAST of HG10021649 vs. ExPASy TrEMBL
Match:
U5CUI2 (Retrotrans_gag domain-containing protein OS=Amborella trichopoda OX=13333 GN=AMTR_s04947p00003620 PE=4 SV=1)
HSP 1 Score: 114.0 bits (284), Expect = 4.8e-22
Identity = 55/101 (54.46%), Postives = 71/101 (70.30%), Query Frame = 0
Query: 34 NPIFIADDRDRAIRDYAAPTFQTLDTSILDPPIDVPTFEMKPLMFQ--NSFGQFAQLPNE 93
NPI +ADDR RAIR+YAAP F L+ I+ P I P FE+KP+MFQ + GQF+ +P E
Sbjct: 11 NPIILADDRARAIREYAAPMFNELNPGIVRPEIQAPQFELKPVMFQMLQTVGQFSGMPTE 70
Query: 94 DPHKRLILFMRIYHSFKVNGVSEEALRLKLFPYFLQGDAKA 133
DPH L F+ + SFK+ GVSEE LRLKLFP+ L+ A++
Sbjct: 71 DPHLHLRSFLEVSDSFKIQGVSEEVLRLKLFPFSLRDRARS 111
BLAST of HG10021649 vs. ExPASy TrEMBL
Match:
U5CUK7 (Uncharacterized protein OS=Amborella trichopoda OX=13333 GN=AMTR_s03373p00007640 PE=4 SV=1)
HSP 1 Score: 112.8 bits (281), Expect = 1.1e-21
Identity = 56/101 (55.45%), Postives = 71/101 (70.30%), Query Frame = 0
Query: 34 NPIFIADDRDRAIRDYAAPTFQTLDTSILDPPIDVPTFEMKPLMFQ--NSFGQFAQLPNE 93
NPI +ADDR RAIR+YAAP F L++ I+ P I P FE+KP+MFQ + GQF P E
Sbjct: 13 NPIALADDRARAIREYAAPMFNELNSGIVRPEIQAPHFELKPVMFQMLQTVGQFGGSPTE 72
Query: 94 DPHKRLILFMRIYHSFKVNGVSEEALRLKLFPYFLQGDAKA 133
DPH + F+ + SFK+ GVSEEALRLKLFP+ L+ A+A
Sbjct: 73 DPHLHIRSFLEVSDSFKLQGVSEEALRLKLFPFSLRDRARA 113
BLAST of HG10021649 vs. ExPASy TrEMBL
Match:
A0A2P5CXX0 (Uncharacterized protein (Fragment) OS=Parasponia andersonii OX=3476 GN=PanWU01x14_113560 PE=4 SV=1)
HSP 1 Score: 99.8 bits (247), Expect = 9.3e-18
Identity = 52/106 (49.06%), Postives = 68/106 (64.15%), Query Frame = 0
Query: 29 VVDPRNPIFIADDRDRAIRDYAAPTFQTLDTSILDPPIDVPTFEMKPLMFQ--NSFGQFA 88
+ D + +ADDRDRAIR+YA P L+ I+ I P FE+KP+MFQ + GQF
Sbjct: 2 MADANDAAAMADDRDRAIREYAIPILNGLNLGIVRSEIQAPQFELKPVMFQMLQTVGQFI 61
Query: 89 QLPNEDPHKRLILFMRIYHSFKVNGVSEEALRLKLFPYFLQGDAKA 133
+P EDPH L LF+ + SFK+ GV +EALRLKLF Y L+ A+A
Sbjct: 62 GVPTEDPHLHLRLFIEVRDSFKLQGVIDEALRLKLFLYSLRDRARA 107
BLAST of HG10021649 vs. ExPASy TrEMBL
Match:
A0A1U8PGE2 (uncharacterized protein LOC107941998 OS=Gossypium hirsutum OX=3635 GN=LOC107958895 PE=4 SV=1)
HSP 1 Score: 99.4 bits (246), Expect = 1.2e-17
Identity = 54/114 (47.37%), Postives = 73/114 (64.04%), Query Frame = 0
Query: 21 DQQPQPQPVVDPRNPIFIADDRDRAIRDYAAPTFQTLDTSILDPPIDVPTFEMKPLMFQ- 80
+Q P + NPI +ADDR+ AI+ Y P F L+ SI P I+V F+MK ++FQ
Sbjct: 7 NQNPGRTFAYNTHNPITVADDRNCAIQQYLIPLFNELNPSISRPEIEVQQFKMKSVIFQM 66
Query: 81 -NSFGQFAQLPNEDPHKRLILFMRIYHSFKVNGVSEEALRLKLFPYFLQGDAKA 133
+ GQF+ +P +DPH L LFM + SFK+ GV E+ALRL+LFPYFL+ A A
Sbjct: 67 LQNMGQFSGIPTKDPHLYLRLFMEVSDSFKLVGVVEDALRLRLFPYFLRDRALA 120
BLAST of HG10021649 vs. ExPASy TrEMBL
Match:
W9RHB3 (Putative disease resistance RPP13-like protein 1 OS=Morus notabilis OX=981085 GN=L484_000983 PE=4 SV=1)
HSP 1 Score: 98.2 bits (243), Expect = 2.7e-17
Identity = 51/112 (45.54%), Postives = 69/112 (61.61%), Query Frame = 0
Query: 23 QPQPQPVVDPRNPIFIADDRDRAIRDYAAPTFQTLDTSILDPPIDVPTFEMKPLMFQ--N 82
Q Q ++P F+ DDRDRAIRD+A P L+ I+ P I+ P FE+KP+MFQ
Sbjct: 1383 QGQQLNALEPAQRPFVVDDRDRAIRDFAVPVLDGLNPVIVRPNIEAPHFELKPVMFQMLQ 1442
Query: 83 SFGQFAQLPNEDPHKRLILFMRIYHSFKVNGVSEEALRLKLFPYFLQGDAKA 133
GQF+ + +DPH+ L LFM + FK+ GV E LRL LFP+ L+ A+A
Sbjct: 1443 IVGQFSGMATDDPHQHLRLFMEVSDIFKLPGVPSETLRLTLFPFSLRDRARA 1494
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| ERM93404.1 | 9.8e-22 | 54.46 | hypothetical protein AMTR_s04947p00003620 [Amborella trichopoda] | [more] |
| XP_017216983.1 | 1.3e-21 | 56.70 | PREDICTED: uncharacterized protein LOC108194534 [Daucus carota subsp. sativus] | [more] |
| ERM93434.1 | 2.2e-21 | 55.45 | hypothetical protein AMTR_s03373p00007640 [Amborella trichopoda] | [more] |
| XP_030497803.1 | 2.9e-21 | 55.45 | uncharacterized protein LOC115713460 [Cannabis sativa] | [more] |
| XP_030508936.1 | 3.7e-21 | 55.45 | uncharacterized protein LOC115723589 [Cannabis sativa] | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| Match Name | E-value | Identity | Description | |
|---|
| U5CUI2 | 4.8e-22 | 54.46 | Retrotrans_gag domain-containing protein OS=Amborella trichopoda OX=13333 GN=AMT... | [more] |
| U5CUK7 | 1.1e-21 | 55.45 | Uncharacterized protein OS=Amborella trichopoda OX=13333 GN=AMTR_s03373p00007640... | [more] |
| A0A2P5CXX0 | 9.3e-18 | 49.06 | Uncharacterized protein (Fragment) OS=Parasponia andersonii OX=3476 GN=PanWU01x1... | [more] |
| A0A1U8PGE2 | 1.2e-17 | 47.37 | uncharacterized protein LOC107941998 OS=Gossypium hirsutum OX=3635 GN=LOC1079588... | [more] |
| W9RHB3 | 2.7e-17 | 45.54 | Putative disease resistance RPP13-like protein 1 OS=Morus notabilis OX=981085 GN... | [more] |
| Match Name | E-value | Identity | Description | |
|---|
