HG10021649.1 (mRNA) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10021649.1
Type	mRNA
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	Transcription factor MYB34
Location	Chr05: 13140432 .. 13140830 (+)
Sequence length	399
RNA-Seq Expression	HG10021649.1
Synteny	HG10021649.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAATCTGCTTGGAGACGATCCTCTTGTACCTCCTCGGAATAACGTCCAACAAAATGGAGATCAACAACCACAACCACAACCAGTTGTAGACCCACGAAACCCCATCTTCATAGCAGATGATAGGGACAGAGCCATCAGAGATTATGCTGCGCCCACATTTCAAACTTTGGACACTAGCATCCTCGATCCACCAATTGATGTGCCCACATTTGAAATGAAACCACTTATGTTTCAAAACTCATTTGGTCAATTTGCCCAGCTACCTAATGAAGACCCCCACAAACGTCTTATACTTTTTATGAGAATCTACCATTCGTTTAAAGTTAATGGTGTTTCTGAAGAGGCATTGAGACTTAAGTTGTTTCCTTACTTTTTGCAAGGAGATGCTAAAGCATGA

mRNA sequence

ATGAATCTGCTTGGAGACGATCCTCTTGTACCTCCTCGGAATAACGTCCAACAAAATGGAGATCAACAACCACAACCACAACCAGTTGTAGACCCACGAAACCCCATCTTCATAGCAGATGATAGGGACAGAGCCATCAGAGATTATGCTGCGCCCACATTTCAAACTTTGGACACTAGCATCCTCGATCCACCAATTGATGTGCCCACATTTGAAATGAAACCACTTATGTTTCAAAACTCATTTGGTCAATTTGCCCAGCTACCTAATGAAGACCCCCACAAACGTCTTATACTTTTTATGAGAATCTACCATTCGTTTAAAGTTAATGGTGTTTCTGAAGAGGCATTGAGACTTAAGTTGTTTCCTTACTTTTTGCAAGGAGATGCTAAAGCATGA

Coding sequence (CDS)

ATGAATCTGCTTGGAGACGATCCTCTTGTACCTCCTCGGAATAACGTCCAACAAAATGGAGATCAACAACCACAACCACAACCAGTTGTAGACCCACGAAACCCCATCTTCATAGCAGATGATAGGGACAGAGCCATCAGAGATTATGCTGCGCCCACATTTCAAACTTTGGACACTAGCATCCTCGATCCACCAATTGATGTGCCCACATTTGAAATGAAACCACTTATGTTTCAAAACTCATTTGGTCAATTTGCCCAGCTACCTAATGAAGACCCCCACAAACGTCTTATACTTTTTATGAGAATCTACCATTCGTTTAAAGTTAATGGTGTTTCTGAAGAGGCATTGAGACTTAAGTTGTTTCCTTACTTTTTGCAAGGAGATGCTAAAGCATGA

Protein sequence

MNLLGDDPLVPPRNNVQQNGDQQPQPQPVVDPRNPIFIADDRDRAIRDYAAPTFQTLDTSILDPPIDVPTFEMKPLMFQNSFGQFAQLPNEDPHKRLILFMRIYHSFKVNGVSEEALRLKLFPYFLQGDAKA

Homology

[Close]

BLAST of HG10021649.1 vs. NCBI nr
Match: ERM93404.1 (hypothetical protein AMTR_s04947p00003620 [Amborella trichopoda])

HSP 1 Score: 114.0 bits (284), Expect = 9.8e-22
Identity = 55/101 (54.46%), Postives = 71/101 (70.30%), Query Frame = 0


Query: 34  NPIFIADDRDRAIRDYAAPTFQTLDTSILDPPIDVPTFEMKPLMFQ--NSFGQFAQLPNE 93
           NPI +ADDR RAIR+YAAP F  L+  I+ P I  P FE+KP+MFQ   + GQF+ +P E
Sbjct: 11  NPIILADDRARAIREYAAPMFNELNPGIVRPEIQAPQFELKPVMFQMLQTVGQFSGMPTE 70

Query: 94  DPHKRLILFMRIYHSFKVNGVSEEALRLKLFPYFLQGDAKA 133
           DPH  L  F+ +  SFK+ GVSEE LRLKLFP+ L+  A++
Sbjct: 71  DPHLHLRSFLEVSDSFKIQGVSEEVLRLKLFPFSLRDRARS 111

[Close]

BLAST of HG10021649.1 vs. NCBI nr
Match: XP_017216983.1 (PREDICTED: uncharacterized protein LOC108194534 [Daucus carota subsp. sativus])

HSP 1 Score: 113.6 bits (283), Expect = 1.3e-21
Identity = 55/97 (56.70%), Postives = 70/97 (72.16%), Query Frame = 0


Query: 37  FIADDRDRAIRDYAAPTFQTLDTSILDPPIDVPTFEMKPLMFQ--NSFGQFAQLPNEDPH 96
           FI DD+DRAIR YAAP F+ L++ I+ P I    FE+KP+MFQ   + GQF+ +P EDPH
Sbjct: 53  FIVDDKDRAIRQYAAPRFEELNSGIIRPNIQATQFELKPVMFQMLQTIGQFSGMPTEDPH 112

Query: 97  KRLILFMRIYHSFKVNGVSEEALRLKLFPYFLQGDAK 132
             L LFM I  SFK  GV+E+ALRLKLFPYF++  A+
Sbjct: 113 LHLRLFMEISDSFKFQGVTEDALRLKLFPYFVRDRAR 149

[Close]

BLAST of HG10021649.1 vs. NCBI nr
Match: ERM93434.1 (hypothetical protein AMTR_s03373p00007640 [Amborella trichopoda])

HSP 1 Score: 112.8 bits (281), Expect = 2.2e-21
Identity = 56/101 (55.45%), Postives = 71/101 (70.30%), Query Frame = 0


Query: 34  NPIFIADDRDRAIRDYAAPTFQTLDTSILDPPIDVPTFEMKPLMFQ--NSFGQFAQLPNE 93
           NPI +ADDR RAIR+YAAP F  L++ I+ P I  P FE+KP+MFQ   + GQF   P E
Sbjct: 13  NPIALADDRARAIREYAAPMFNELNSGIVRPEIQAPHFELKPVMFQMLQTVGQFGGSPTE 72

Query: 94  DPHKRLILFMRIYHSFKVNGVSEEALRLKLFPYFLQGDAKA 133
           DPH  +  F+ +  SFK+ GVSEEALRLKLFP+ L+  A+A
Sbjct: 73  DPHLHIRSFLEVSDSFKLQGVSEEALRLKLFPFSLRDRARA 113

[Close]

BLAST of HG10021649.1 vs. NCBI nr
Match: XP_030497803.1 (uncharacterized protein LOC115713460 [Cannabis sativa])

HSP 1 Score: 112.5 bits (280), Expect = 2.9e-21
Identity = 56/101 (55.45%), Postives = 70/101 (69.31%), Query Frame = 0


Query: 34  NPIFIADDRDRAIRDYAAPTFQTLDTSILDPPIDVPTFEMKPLMFQ--NSFGQFAQLPNE 93
           NPI +ADDR RAIR+YAAP F  L+  I+ P I  P FE+KP+MFQ   + GQF   P E
Sbjct: 15  NPIALADDRTRAIREYAAPMFNELNPGIVRPEIQAPHFELKPVMFQMLQTVGQFGGSPTE 74

Query: 94  DPHKRLILFMRIYHSFKVNGVSEEALRLKLFPYFLQGDAKA 133
           DPH  +  F+ +  SFK+ GVSEEALRLKLFP+ L+  A+A
Sbjct: 75  DPHLHIRSFLEVSDSFKLQGVSEEALRLKLFPFSLRDRARA 115

[Close]

BLAST of HG10021649.1 vs. NCBI nr
Match: XP_030508936.1 (uncharacterized protein LOC115723589 [Cannabis sativa])

HSP 1 Score: 112.1 bits (279), Expect = 3.7e-21
Identity = 56/101 (55.45%), Postives = 70/101 (69.31%), Query Frame = 0


Query: 34  NPIFIADDRDRAIRDYAAPTFQTLDTSILDPPIDVPTFEMKPLMFQ--NSFGQFAQLPNE 93
           NPI +ADDR RAIR+YAAP F  L+  I+ P I  P FE+KP+MFQ   + GQF   P E
Sbjct: 50  NPIALADDRARAIREYAAPMFNELNPGIVRPEIQAPHFELKPVMFQMLQTVGQFGGSPTE 109

Query: 94  DPHKRLILFMRIYHSFKVNGVSEEALRLKLFPYFLQGDAKA 133
           DPH  +  F+ +  SFK+ GVSEEALRLKLFP+ L+  A+A
Sbjct: 110 DPHLHIRSFLEVSDSFKLQGVSEEALRLKLFPFSLRDRARA 150

[Close]

BLAST of HG10021649.1 vs. ExPASy TrEMBL
Match: U5CUI2 (Retrotrans_gag domain-containing protein OS=Amborella trichopoda OX=13333 GN=AMTR_s04947p00003620 PE=4 SV=1)

HSP 1 Score: 114.0 bits (284), Expect = 4.8e-22
Identity = 55/101 (54.46%), Postives = 71/101 (70.30%), Query Frame = 0


Query: 34  NPIFIADDRDRAIRDYAAPTFQTLDTSILDPPIDVPTFEMKPLMFQ--NSFGQFAQLPNE 93
           NPI +ADDR RAIR+YAAP F  L+  I+ P I  P FE+KP+MFQ   + GQF+ +P E
Sbjct: 11  NPIILADDRARAIREYAAPMFNELNPGIVRPEIQAPQFELKPVMFQMLQTVGQFSGMPTE 70

Query: 94  DPHKRLILFMRIYHSFKVNGVSEEALRLKLFPYFLQGDAKA 133
           DPH  L  F+ +  SFK+ GVSEE LRLKLFP+ L+  A++
Sbjct: 71  DPHLHLRSFLEVSDSFKIQGVSEEVLRLKLFPFSLRDRARS 111

[Close]

BLAST of HG10021649.1 vs. ExPASy TrEMBL
Match: U5CUK7 (Uncharacterized protein OS=Amborella trichopoda OX=13333 GN=AMTR_s03373p00007640 PE=4 SV=1)

HSP 1 Score: 112.8 bits (281), Expect = 1.1e-21
Identity = 56/101 (55.45%), Postives = 71/101 (70.30%), Query Frame = 0


Query: 34  NPIFIADDRDRAIRDYAAPTFQTLDTSILDPPIDVPTFEMKPLMFQ--NSFGQFAQLPNE 93
           NPI +ADDR RAIR+YAAP F  L++ I+ P I  P FE+KP+MFQ   + GQF   P E
Sbjct: 13  NPIALADDRARAIREYAAPMFNELNSGIVRPEIQAPHFELKPVMFQMLQTVGQFGGSPTE 72

Query: 94  DPHKRLILFMRIYHSFKVNGVSEEALRLKLFPYFLQGDAKA 133
           DPH  +  F+ +  SFK+ GVSEEALRLKLFP+ L+  A+A
Sbjct: 73  DPHLHIRSFLEVSDSFKLQGVSEEALRLKLFPFSLRDRARA 113

[Close]

BLAST of HG10021649.1 vs. ExPASy TrEMBL
Match: A0A2P5CXX0 (Uncharacterized protein (Fragment) OS=Parasponia andersonii OX=3476 GN=PanWU01x14_113560 PE=4 SV=1)

HSP 1 Score: 99.8 bits (247), Expect = 9.3e-18
Identity = 52/106 (49.06%), Postives = 68/106 (64.15%), Query Frame = 0


Query: 29  VVDPRNPIFIADDRDRAIRDYAAPTFQTLDTSILDPPIDVPTFEMKPLMFQ--NSFGQFA 88
           + D  +   +ADDRDRAIR+YA P    L+  I+   I  P FE+KP+MFQ   + GQF 
Sbjct: 2   MADANDAAAMADDRDRAIREYAIPILNGLNLGIVRSEIQAPQFELKPVMFQMLQTVGQFI 61

Query: 89  QLPNEDPHKRLILFMRIYHSFKVNGVSEEALRLKLFPYFLQGDAKA 133
            +P EDPH  L LF+ +  SFK+ GV +EALRLKLF Y L+  A+A
Sbjct: 62  GVPTEDPHLHLRLFIEVRDSFKLQGVIDEALRLKLFLYSLRDRARA 107

[Close]

BLAST of HG10021649.1 vs. ExPASy TrEMBL
Match: A0A1U8PGE2 (uncharacterized protein LOC107941998 OS=Gossypium hirsutum OX=3635 GN=LOC107958895 PE=4 SV=1)

HSP 1 Score: 99.4 bits (246), Expect = 1.2e-17
Identity = 54/114 (47.37%), Postives = 73/114 (64.04%), Query Frame = 0


Query: 21  DQQPQPQPVVDPRNPIFIADDRDRAIRDYAAPTFQTLDTSILDPPIDVPTFEMKPLMFQ- 80
           +Q P      +  NPI +ADDR+ AI+ Y  P F  L+ SI  P I+V  F+MK ++FQ 
Sbjct: 7   NQNPGRTFAYNTHNPITVADDRNCAIQQYLIPLFNELNPSISRPEIEVQQFKMKSVIFQM 66

Query: 81  -NSFGQFAQLPNEDPHKRLILFMRIYHSFKVNGVSEEALRLKLFPYFLQGDAKA 133
             + GQF+ +P +DPH  L LFM +  SFK+ GV E+ALRL+LFPYFL+  A A
Sbjct: 67  LQNMGQFSGIPTKDPHLYLRLFMEVSDSFKLVGVVEDALRLRLFPYFLRDRALA 120

[Close]

BLAST of HG10021649.1 vs. ExPASy TrEMBL
Match: W9RHB3 (Putative disease resistance RPP13-like protein 1 OS=Morus notabilis OX=981085 GN=L484_000983 PE=4 SV=1)

HSP 1 Score: 98.2 bits (243), Expect = 2.7e-17
Identity = 51/112 (45.54%), Postives = 69/112 (61.61%), Query Frame = 0


Query: 23   QPQPQPVVDPRNPIFIADDRDRAIRDYAAPTFQTLDTSILDPPIDVPTFEMKPLMFQ--N 82
            Q Q    ++P    F+ DDRDRAIRD+A P    L+  I+ P I+ P FE+KP+MFQ   
Sbjct: 1383 QGQQLNALEPAQRPFVVDDRDRAIRDFAVPVLDGLNPVIVRPNIEAPHFELKPVMFQMLQ 1442

Query: 83   SFGQFAQLPNEDPHKRLILFMRIYHSFKVNGVSEEALRLKLFPYFLQGDAKA 133
              GQF+ +  +DPH+ L LFM +   FK+ GV  E LRL LFP+ L+  A+A
Sbjct: 1443 IVGQFSGMATDDPHQHLRLFMEVSDIFKLPGVPSETLRLTLFPFSLRDRARA 1494

The following BLAST results are available for this feature:

BLAST of HG10021649.1 vs. NCBI nr


Match Name	E-value	Identity	Description
ERM93404.1	9.8e-22	54.46	hypothetical protein AMTR_s04947p00003620 [Amborella trichopoda]	[more]
XP_017216983.1	1.3e-21	56.70	PREDICTED: uncharacterized protein LOC108194534 [Daucus carota subsp. sativus]	[more]
ERM93434.1	2.2e-21	55.45	hypothetical protein AMTR_s03373p00007640 [Amborella trichopoda]	[more]
XP_030497803.1	2.9e-21	55.45	uncharacterized protein LOC115713460 [Cannabis sativa]	[more]
XP_030508936.1	3.7e-21	55.45	uncharacterized protein LOC115723589 [Cannabis sativa]	[more]

BLAST of HG10021649.1 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of HG10021649.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
U5CUI2	4.8e-22	54.46	Retrotrans_gag domain-containing protein OS=Amborella trichopoda OX=13333 GN=AMT...	[more]
U5CUK7	1.1e-21	55.45	Uncharacterized protein OS=Amborella trichopoda OX=13333 GN=AMTR_s03373p00007640...	[more]
A0A2P5CXX0	9.3e-18	49.06	Uncharacterized protein (Fragment) OS=Parasponia andersonii OX=3476 GN=PanWU01x1...	[more]
A0A1U8PGE2	1.2e-17	47.37	uncharacterized protein LOC107941998 OS=Gossypium hirsutum OX=3635 GN=LOC1079588...	[more]
W9RHB3	2.7e-17	45.54	Putative disease resistance RPP13-like protein 1 OS=Morus notabilis OX=981085 GN...	[more]

BLAST of HG10021649.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 12..27
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..34

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
HG10021649	HG10021649	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
HG10021649.1-cds	HG10021649.1-cds-Chr05:13140432..13140830	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
HG10021649.1	HG10021649.1-protein	polypeptide