HG10021649 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview
NameHG10021649
Typegene
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
DescriptionTranscription factor MYB34
LocationChr05: 13140432 .. 13140830 (+)
RNA-Seq ExpressionHG10021649
SyntenyHG10021649
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAATCTGCTTGGAGACGATCCTCTTGTACCTCCTCGGAATAACGTCCAACAAAATGGAGATCAACAACCACAACCACAACCAGTTGTAGACCCACGAAACCCCATCTTCATAGCAGATGATAGGGACAGAGCCATCAGAGATTATGCTGCGCCCACATTTCAAACTTTGGACACTAGCATCCTCGATCCACCAATTGATGTGCCCACATTTGAAATGAAACCACTTATGTTTCAAAACTCATTTGGTCAATTTGCCCAGCTACCTAATGAAGACCCCCACAAACGTCTTATACTTTTTATGAGAATCTACCATTCGTTTAAAGTTAATGGTGTTTCTGAAGAGGCATTGAGACTTAAGTTGTTTCCTTACTTTTTGCAAGGAGATGCTAAAGCATGA

mRNA sequence

ATGAATCTGCTTGGAGACGATCCTCTTGTACCTCCTCGGAATAACGTCCAACAAAATGGAGATCAACAACCACAACCACAACCAGTTGTAGACCCACGAAACCCCATCTTCATAGCAGATGATAGGGACAGAGCCATCAGAGATTATGCTGCGCCCACATTTCAAACTTTGGACACTAGCATCCTCGATCCACCAATTGATGTGCCCACATTTGAAATGAAACCACTTATGTTTCAAAACTCATTTGGTCAATTTGCCCAGCTACCTAATGAAGACCCCCACAAACGTCTTATACTTTTTATGAGAATCTACCATTCGTTTAAAGTTAATGGTGTTTCTGAAGAGGCATTGAGACTTAAGTTGTTTCCTTACTTTTTGCAAGGAGATGCTAAAGCATGA

Coding sequence (CDS)

ATGAATCTGCTTGGAGACGATCCTCTTGTACCTCCTCGGAATAACGTCCAACAAAATGGAGATCAACAACCACAACCACAACCAGTTGTAGACCCACGAAACCCCATCTTCATAGCAGATGATAGGGACAGAGCCATCAGAGATTATGCTGCGCCCACATTTCAAACTTTGGACACTAGCATCCTCGATCCACCAATTGATGTGCCCACATTTGAAATGAAACCACTTATGTTTCAAAACTCATTTGGTCAATTTGCCCAGCTACCTAATGAAGACCCCCACAAACGTCTTATACTTTTTATGAGAATCTACCATTCGTTTAAAGTTAATGGTGTTTCTGAAGAGGCATTGAGACTTAAGTTGTTTCCTTACTTTTTGCAAGGAGATGCTAAAGCATGA

Protein sequence

MNLLGDDPLVPPRNNVQQNGDQQPQPQPVVDPRNPIFIADDRDRAIRDYAAPTFQTLDTSILDPPIDVPTFEMKPLMFQNSFGQFAQLPNEDPHKRLILFMRIYHSFKVNGVSEEALRLKLFPYFLQGDAKA
Homology
BLAST of HG10021649 vs. NCBI nr
Match: ERM93404.1 (hypothetical protein AMTR_s04947p00003620 [Amborella trichopoda])

HSP 1 Score: 114.0 bits (284), Expect = 9.8e-22
Identity = 55/101 (54.46%), Postives = 71/101 (70.30%), Query Frame = 0

Query: 34  NPIFIADDRDRAIRDYAAPTFQTLDTSILDPPIDVPTFEMKPLMFQ--NSFGQFAQLPNE 93
           NPI +ADDR RAIR+YAAP F  L+  I+ P I  P FE+KP+MFQ   + GQF+ +P E
Sbjct: 11  NPIILADDRARAIREYAAPMFNELNPGIVRPEIQAPQFELKPVMFQMLQTVGQFSGMPTE 70

Query: 94  DPHKRLILFMRIYHSFKVNGVSEEALRLKLFPYFLQGDAKA 133
           DPH  L  F+ +  SFK+ GVSEE LRLKLFP+ L+  A++
Sbjct: 71  DPHLHLRSFLEVSDSFKIQGVSEEVLRLKLFPFSLRDRARS 111

BLAST of HG10021649 vs. NCBI nr
Match: XP_017216983.1 (PREDICTED: uncharacterized protein LOC108194534 [Daucus carota subsp. sativus])

HSP 1 Score: 113.6 bits (283), Expect = 1.3e-21
Identity = 55/97 (56.70%), Postives = 70/97 (72.16%), Query Frame = 0

Query: 37  FIADDRDRAIRDYAAPTFQTLDTSILDPPIDVPTFEMKPLMFQ--NSFGQFAQLPNEDPH 96
           FI DD+DRAIR YAAP F+ L++ I+ P I    FE+KP+MFQ   + GQF+ +P EDPH
Sbjct: 53  FIVDDKDRAIRQYAAPRFEELNSGIIRPNIQATQFELKPVMFQMLQTIGQFSGMPTEDPH 112

Query: 97  KRLILFMRIYHSFKVNGVSEEALRLKLFPYFLQGDAK 132
             L LFM I  SFK  GV+E+ALRLKLFPYF++  A+
Sbjct: 113 LHLRLFMEISDSFKFQGVTEDALRLKLFPYFVRDRAR 149

BLAST of HG10021649 vs. NCBI nr
Match: ERM93434.1 (hypothetical protein AMTR_s03373p00007640 [Amborella trichopoda])

HSP 1 Score: 112.8 bits (281), Expect = 2.2e-21
Identity = 56/101 (55.45%), Postives = 71/101 (70.30%), Query Frame = 0

Query: 34  NPIFIADDRDRAIRDYAAPTFQTLDTSILDPPIDVPTFEMKPLMFQ--NSFGQFAQLPNE 93
           NPI +ADDR RAIR+YAAP F  L++ I+ P I  P FE+KP+MFQ   + GQF   P E
Sbjct: 13  NPIALADDRARAIREYAAPMFNELNSGIVRPEIQAPHFELKPVMFQMLQTVGQFGGSPTE 72

Query: 94  DPHKRLILFMRIYHSFKVNGVSEEALRLKLFPYFLQGDAKA 133
           DPH  +  F+ +  SFK+ GVSEEALRLKLFP+ L+  A+A
Sbjct: 73  DPHLHIRSFLEVSDSFKLQGVSEEALRLKLFPFSLRDRARA 113

BLAST of HG10021649 vs. NCBI nr
Match: XP_030497803.1 (uncharacterized protein LOC115713460 [Cannabis sativa])

HSP 1 Score: 112.5 bits (280), Expect = 2.9e-21
Identity = 56/101 (55.45%), Postives = 70/101 (69.31%), Query Frame = 0

Query: 34  NPIFIADDRDRAIRDYAAPTFQTLDTSILDPPIDVPTFEMKPLMFQ--NSFGQFAQLPNE 93
           NPI +ADDR RAIR+YAAP F  L+  I+ P I  P FE+KP+MFQ   + GQF   P E
Sbjct: 15  NPIALADDRTRAIREYAAPMFNELNPGIVRPEIQAPHFELKPVMFQMLQTVGQFGGSPTE 74

Query: 94  DPHKRLILFMRIYHSFKVNGVSEEALRLKLFPYFLQGDAKA 133
           DPH  +  F+ +  SFK+ GVSEEALRLKLFP+ L+  A+A
Sbjct: 75  DPHLHIRSFLEVSDSFKLQGVSEEALRLKLFPFSLRDRARA 115

BLAST of HG10021649 vs. NCBI nr
Match: XP_030508936.1 (uncharacterized protein LOC115723589 [Cannabis sativa])

HSP 1 Score: 112.1 bits (279), Expect = 3.7e-21
Identity = 56/101 (55.45%), Postives = 70/101 (69.31%), Query Frame = 0

Query: 34  NPIFIADDRDRAIRDYAAPTFQTLDTSILDPPIDVPTFEMKPLMFQ--NSFGQFAQLPNE 93
           NPI +ADDR RAIR+YAAP F  L+  I+ P I  P FE+KP+MFQ   + GQF   P E
Sbjct: 50  NPIALADDRARAIREYAAPMFNELNPGIVRPEIQAPHFELKPVMFQMLQTVGQFGGSPTE 109

Query: 94  DPHKRLILFMRIYHSFKVNGVSEEALRLKLFPYFLQGDAKA 133
           DPH  +  F+ +  SFK+ GVSEEALRLKLFP+ L+  A+A
Sbjct: 110 DPHLHIRSFLEVSDSFKLQGVSEEALRLKLFPFSLRDRARA 150

BLAST of HG10021649 vs. ExPASy TrEMBL
Match: U5CUI2 (Retrotrans_gag domain-containing protein OS=Amborella trichopoda OX=13333 GN=AMTR_s04947p00003620 PE=4 SV=1)

HSP 1 Score: 114.0 bits (284), Expect = 4.8e-22
Identity = 55/101 (54.46%), Postives = 71/101 (70.30%), Query Frame = 0

Query: 34  NPIFIADDRDRAIRDYAAPTFQTLDTSILDPPIDVPTFEMKPLMFQ--NSFGQFAQLPNE 93
           NPI +ADDR RAIR+YAAP F  L+  I+ P I  P FE+KP+MFQ   + GQF+ +P E
Sbjct: 11  NPIILADDRARAIREYAAPMFNELNPGIVRPEIQAPQFELKPVMFQMLQTVGQFSGMPTE 70

Query: 94  DPHKRLILFMRIYHSFKVNGVSEEALRLKLFPYFLQGDAKA 133
           DPH  L  F+ +  SFK+ GVSEE LRLKLFP+ L+  A++
Sbjct: 71  DPHLHLRSFLEVSDSFKIQGVSEEVLRLKLFPFSLRDRARS 111

BLAST of HG10021649 vs. ExPASy TrEMBL
Match: U5CUK7 (Uncharacterized protein OS=Amborella trichopoda OX=13333 GN=AMTR_s03373p00007640 PE=4 SV=1)

HSP 1 Score: 112.8 bits (281), Expect = 1.1e-21
Identity = 56/101 (55.45%), Postives = 71/101 (70.30%), Query Frame = 0

Query: 34  NPIFIADDRDRAIRDYAAPTFQTLDTSILDPPIDVPTFEMKPLMFQ--NSFGQFAQLPNE 93
           NPI +ADDR RAIR+YAAP F  L++ I+ P I  P FE+KP+MFQ   + GQF   P E
Sbjct: 13  NPIALADDRARAIREYAAPMFNELNSGIVRPEIQAPHFELKPVMFQMLQTVGQFGGSPTE 72

Query: 94  DPHKRLILFMRIYHSFKVNGVSEEALRLKLFPYFLQGDAKA 133
           DPH  +  F+ +  SFK+ GVSEEALRLKLFP+ L+  A+A
Sbjct: 73  DPHLHIRSFLEVSDSFKLQGVSEEALRLKLFPFSLRDRARA 113

BLAST of HG10021649 vs. ExPASy TrEMBL
Match: A0A2P5CXX0 (Uncharacterized protein (Fragment) OS=Parasponia andersonii OX=3476 GN=PanWU01x14_113560 PE=4 SV=1)

HSP 1 Score: 99.8 bits (247), Expect = 9.3e-18
Identity = 52/106 (49.06%), Postives = 68/106 (64.15%), Query Frame = 0

Query: 29  VVDPRNPIFIADDRDRAIRDYAAPTFQTLDTSILDPPIDVPTFEMKPLMFQ--NSFGQFA 88
           + D  +   +ADDRDRAIR+YA P    L+  I+   I  P FE+KP+MFQ   + GQF 
Sbjct: 2   MADANDAAAMADDRDRAIREYAIPILNGLNLGIVRSEIQAPQFELKPVMFQMLQTVGQFI 61

Query: 89  QLPNEDPHKRLILFMRIYHSFKVNGVSEEALRLKLFPYFLQGDAKA 133
            +P EDPH  L LF+ +  SFK+ GV +EALRLKLF Y L+  A+A
Sbjct: 62  GVPTEDPHLHLRLFIEVRDSFKLQGVIDEALRLKLFLYSLRDRARA 107

BLAST of HG10021649 vs. ExPASy TrEMBL
Match: A0A1U8PGE2 (uncharacterized protein LOC107941998 OS=Gossypium hirsutum OX=3635 GN=LOC107958895 PE=4 SV=1)

HSP 1 Score: 99.4 bits (246), Expect = 1.2e-17
Identity = 54/114 (47.37%), Postives = 73/114 (64.04%), Query Frame = 0

Query: 21  DQQPQPQPVVDPRNPIFIADDRDRAIRDYAAPTFQTLDTSILDPPIDVPTFEMKPLMFQ- 80
           +Q P      +  NPI +ADDR+ AI+ Y  P F  L+ SI  P I+V  F+MK ++FQ 
Sbjct: 7   NQNPGRTFAYNTHNPITVADDRNCAIQQYLIPLFNELNPSISRPEIEVQQFKMKSVIFQM 66

Query: 81  -NSFGQFAQLPNEDPHKRLILFMRIYHSFKVNGVSEEALRLKLFPYFLQGDAKA 133
             + GQF+ +P +DPH  L LFM +  SFK+ GV E+ALRL+LFPYFL+  A A
Sbjct: 67  LQNMGQFSGIPTKDPHLYLRLFMEVSDSFKLVGVVEDALRLRLFPYFLRDRALA 120

BLAST of HG10021649 vs. ExPASy TrEMBL
Match: W9RHB3 (Putative disease resistance RPP13-like protein 1 OS=Morus notabilis OX=981085 GN=L484_000983 PE=4 SV=1)

HSP 1 Score: 98.2 bits (243), Expect = 2.7e-17
Identity = 51/112 (45.54%), Postives = 69/112 (61.61%), Query Frame = 0

Query: 23   QPQPQPVVDPRNPIFIADDRDRAIRDYAAPTFQTLDTSILDPPIDVPTFEMKPLMFQ--N 82
            Q Q    ++P    F+ DDRDRAIRD+A P    L+  I+ P I+ P FE+KP+MFQ   
Sbjct: 1383 QGQQLNALEPAQRPFVVDDRDRAIRDFAVPVLDGLNPVIVRPNIEAPHFELKPVMFQMLQ 1442

Query: 83   SFGQFAQLPNEDPHKRLILFMRIYHSFKVNGVSEEALRLKLFPYFLQGDAKA 133
              GQF+ +  +DPH+ L LFM +   FK+ GV  E LRL LFP+ L+  A+A
Sbjct: 1443 IVGQFSGMATDDPHQHLRLFMEVSDIFKLPGVPSETLRLTLFPFSLRDRARA 1494

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
ERM93404.19.8e-2254.46hypothetical protein AMTR_s04947p00003620 [Amborella trichopoda][more]
XP_017216983.11.3e-2156.70PREDICTED: uncharacterized protein LOC108194534 [Daucus carota subsp. sativus][more]
ERM93434.12.2e-2155.45hypothetical protein AMTR_s03373p00007640 [Amborella trichopoda][more]
XP_030497803.12.9e-2155.45uncharacterized protein LOC115713460 [Cannabis sativa][more]
XP_030508936.13.7e-2155.45uncharacterized protein LOC115723589 [Cannabis sativa][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
U5CUI24.8e-2254.46Retrotrans_gag domain-containing protein OS=Amborella trichopoda OX=13333 GN=AMT... [more]
U5CUK71.1e-2155.45Uncharacterized protein OS=Amborella trichopoda OX=13333 GN=AMTR_s03373p00007640... [more]
A0A2P5CXX09.3e-1849.06Uncharacterized protein (Fragment) OS=Parasponia andersonii OX=3476 GN=PanWU01x1... [more]
A0A1U8PGE21.2e-1747.37uncharacterized protein LOC107941998 OS=Gossypium hirsutum OX=3635 GN=LOC1079588... [more]
W9RHB32.7e-1745.54Putative disease resistance RPP13-like protein 1 OS=Morus notabilis OX=981085 GN... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 12..27
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..34

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
HG10021649.1HG10021649.1mRNA