HG10015062 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10015062
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	Unknown protein
Location	Chr02: 23542937 .. 23543372 (+)
RNA-Seq Expression	HG10015062
Synteny	HG10015062

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTGGAATTCACATGCATTCATTGTAAAGAACCCGAAGAAGAAGCACGAAATCGAAGACTCAGATTAAAGGAATCAGGCAATCGATCGGATGAAGCGAAATTCAGTTCAAATTCGTATAACCTAACCTGCAGATTTGAAGTTACGGTGAAGCGGCTTATCGTTCATCAACGAAATCAGAAATGAGAAGAAGAATATGAACAAACAGATCTAGGGTTTGTTTGTAGAAGAAAGAGTGATTAAATTGAATTGGAAATTGGAATGACTGTACGCTGCTACGTACCAGGAAGAAGCGTTCGTCGGCGAAAACAGAGTGAGTCTGACTAAGCACAGACTGGCAATGGAGCCAACCGCCGTTGCAGTTGGAATTCCTCGACAGCCGCGACGTCCGTCGACCGTCGTCTACGGTGAAAACTCAACTTCCGCCTCTGTGTAA

mRNA sequence

ATGGTGGAATTCACATGCATTCATTGTAAAGAACCCGAAGAAGAAGCACGAAATCGAAGACTCAGATTAAAGGAATCAGGCAATCGATCGGATGAAGCGAAATTCAGTTCAAATTCGTATAACCTAACCTGCAGATTTGAAGTTACGGAAGAAGCGTTCGTCGGCGAAAACAGAGTGAGTCTGACTAAGCACAGACTGGCAATGGAGCCAACCGCCGTTGCAGTTGGAATTCCTCGACAGCCGCGACGTCCGTCGACCGTCGTCTACGGTGAAAACTCAACTTCCGCCTCTGTGTAA

Coding sequence (CDS)

ATGGTGGAATTCACATGCATTCATTGTAAAGAACCCGAAGAAGAAGCACGAAATCGAAGACTCAGATTAAAGGAATCAGGCAATCGATCGGATGAAGCGAAATTCAGTTCAAATTCGTATAACCTAACCTGCAGATTTGAAGTTACGGAAGAAGCGTTCGTCGGCGAAAACAGAGTGAGTCTGACTAAGCACAGACTGGCAATGGAGCCAACCGCCGTTGCAGTTGGAATTCCTCGACAGCCGCGACGTCCGTCGACCGTCGTCTACGGTGAAAACTCAACTTCCGCCTCTGTGTAA

Protein sequence

MVEFTCIHCKEPEEEARNRRLRLKESGNRSDEAKFSSNSYNLTCRFEVTEEAFVGENRVSLTKHRLAMEPTAVAVGIPRQPRRPSTVVYGENSTSASV

Homology

[Close]

BLAST of HG10015062 vs. NCBI nr
Match: KGN51617.1 (hypothetical protein Csa_008300 [Cucumis sativus])

HSP 1 Score: 72.8 bits (177), Expect = 1.9e-09
Identity = 45/98 (45.92%), Postives = 55/98 (56.12%), Query Frame = 0


Query: 1   MVEFTCIHCKEPEEEARNRRLRLKESGNRSDEAKFSSNSYNLTCRFEVTEEAFVGENRVS 60
           MVEF  IHCKE EE+A+  +    +   +  E K   NSY         EEAF G N+ S
Sbjct: 16  MVEFRWIHCKEHEEQAQKSKTDQMKGIMQLIEMK--RNSYR--------EEAFAGVNKAS 75

Query: 61  LTKHRLAMEPTAVAVGIPRQPRRPSTVVYGENSTSASV 99
            T+ RL ME T   VG  RQPR PS V+Y ENS S+S+
Sbjct: 76  QTEQRLTMESTTAVVGFSRQPRHPSAVIYSENSVSSSL 103

[Close]

BLAST of HG10015062 vs. ExPASy TrEMBL
Match: A0A0A0KT76 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G585440 PE=4 SV=1)

HSP 1 Score: 72.8 bits (177), Expect = 9.0e-10
Identity = 45/98 (45.92%), Postives = 55/98 (56.12%), Query Frame = 0


Query: 1   MVEFTCIHCKEPEEEARNRRLRLKESGNRSDEAKFSSNSYNLTCRFEVTEEAFVGENRVS 60
           MVEF  IHCKE EE+A+  +    +   +  E K   NSY         EEAF G N+ S
Sbjct: 16  MVEFRWIHCKEHEEQAQKSKTDQMKGIMQLIEMK--RNSYR--------EEAFAGVNKAS 75

Query: 61  LTKHRLAMEPTAVAVGIPRQPRRPSTVVYGENSTSASV 99
            T+ RL ME T   VG  RQPR PS V+Y ENS S+S+
Sbjct: 76  QTEQRLTMESTTAVVGFSRQPRHPSAVIYSENSVSSSL 103

The following BLAST results are available for this feature:

BLAST of HG10015062 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN51617.1	1.9e-09	45.92	hypothetical protein Csa_008300 [Cucumis sativus]	[more]

BLAST of HG10015062 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of HG10015062 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KT76	9.0e-10	45.92	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G585440 PE=4 SV=1	[more]

BLAST of HG10015062 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 77..98

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10015062.1	HG10015062.1	mRNA