HG10015062.1 (mRNA) Bottle gourd (Hangzhou Gourd) v1

Overview
NameHG10015062.1
TypemRNA
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
DescriptionUnknown protein
LocationChr02: 23542937 .. 23543372 (+)
Sequence length297
RNA-Seq ExpressionHG10015062.1
SyntenyHG10015062.1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTGGAATTCACATGCATTCATTGTAAAGAACCCGAAGAAGAAGCACGAAATCGAAGACTCAGATTAAAGGAATCAGGCAATCGATCGGATGAAGCGAAATTCAGTTCAAATTCGTATAACCTAACCTGCAGATTTGAAGTTACGGTGAAGCGGCTTATCGTTCATCAACGAAATCAGAAATGAGAAGAAGAATATGAACAAACAGATCTAGGGTTTGTTTGTAGAAGAAAGAGTGATTAAATTGAATTGGAAATTGGAATGACTGTACGCTGCTACGTACCAGGAAGAAGCGTTCGTCGGCGAAAACAGAGTGAGTCTGACTAAGCACAGACTGGCAATGGAGCCAACCGCCGTTGCAGTTGGAATTCCTCGACAGCCGCGACGTCCGTCGACCGTCGTCTACGGTGAAAACTCAACTTCCGCCTCTGTGTAA

mRNA sequence

ATGGTGGAATTCACATGCATTCATTGTAAAGAACCCGAAGAAGAAGCACGAAATCGAAGACTCAGATTAAAGGAATCAGGCAATCGATCGGATGAAGCGAAATTCAGTTCAAATTCGTATAACCTAACCTGCAGATTTGAAGTTACGGAAGAAGCGTTCGTCGGCGAAAACAGAGTGAGTCTGACTAAGCACAGACTGGCAATGGAGCCAACCGCCGTTGCAGTTGGAATTCCTCGACAGCCGCGACGTCCGTCGACCGTCGTCTACGGTGAAAACTCAACTTCCGCCTCTGTGTAA

Coding sequence (CDS)

ATGGTGGAATTCACATGCATTCATTGTAAAGAACCCGAAGAAGAAGCACGAAATCGAAGACTCAGATTAAAGGAATCAGGCAATCGATCGGATGAAGCGAAATTCAGTTCAAATTCGTATAACCTAACCTGCAGATTTGAAGTTACGGAAGAAGCGTTCGTCGGCGAAAACAGAGTGAGTCTGACTAAGCACAGACTGGCAATGGAGCCAACCGCCGTTGCAGTTGGAATTCCTCGACAGCCGCGACGTCCGTCGACCGTCGTCTACGGTGAAAACTCAACTTCCGCCTCTGTGTAA

Protein sequence

MVEFTCIHCKEPEEEARNRRLRLKESGNRSDEAKFSSNSYNLTCRFEVTEEAFVGENRVSLTKHRLAMEPTAVAVGIPRQPRRPSTVVYGENSTSASV
Homology
[Close]
BLAST of HG10015062.1 vs. NCBI nr
Match: KGN51617.1 (hypothetical protein Csa_008300 [Cucumis sativus])

HSP 1 Score: 72.8 bits (177), Expect = 1.9e-09
Identity = 45/98 (45.92%), Postives = 55/98 (56.12%), Query Frame = 0 

Query: 1   MVEFTCIHCKEPEEEARNRRLRLKESGNRSDEAKFSSNSYNLTCRFEVTEEAFVGENRVS 60
           MVEF  IHCKE EE+A+  +    +   +  E K   NSY         EEAF G N+ S
Sbjct: 16  MVEFRWIHCKEHEEQAQKSKTDQMKGIMQLIEMK--RNSYR--------EEAFAGVNKAS 75

Query: 61  LTKHRLAMEPTAVAVGIPRQPRRPSTVVYGENSTSASV 99
            T+ RL ME T   VG  RQPR PS V+Y ENS S+S+
Sbjct: 76  QTEQRLTMESTTAVVGFSRQPRHPSAVIYSENSVSSSL 103

[Close]
BLAST of HG10015062.1 vs. ExPASy TrEMBL
Match: A0A0A0KT76 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G585440 PE=4 SV=1)

HSP 1 Score: 72.8 bits (177), Expect = 9.0e-10
Identity = 45/98 (45.92%), Postives = 55/98 (56.12%), Query Frame = 0 

Query: 1   MVEFTCIHCKEPEEEARNRRLRLKESGNRSDEAKFSSNSYNLTCRFEVTEEAFVGENRVS 60
           MVEF  IHCKE EE+A+  +    +   +  E K   NSY         EEAF G N+ S
Sbjct: 16  MVEFRWIHCKEHEEQAQKSKTDQMKGIMQLIEMK--RNSYR--------EEAFAGVNKAS 75

Query: 61  LTKHRLAMEPTAVAVGIPRQPRRPSTVVYGENSTSASV 99
            T+ RL ME T   VG  RQPR PS V+Y ENS S+S+
Sbjct: 76  QTEQRLTMESTTAVVGFSRQPRHPSAVIYSENSVSSSL 103

The following BLAST results are available for this feature:
BLAST of HG10015062.1 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN51617.11.9e-0945.92hypothetical protein Csa_008300 [Cucumis sativus][more]
BLAST of HG10015062.1 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of HG10015062.1 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KT769.0e-1045.92Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G585440 PE=4 SV=1[more]
BLAST of HG10015062.1 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 77..98

Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
HG10015062HG10015062gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
HG10015062.1-cdsHG10015062.1-cds-Chr02:23542937..23543083CDS
HG10015062.1-cdsHG10015062.1-cds-Chr02:23543223..23543372CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
HG10015062.1HG10015062.1-proteinpolypeptide