Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTATGAGGTTGTGTTGGGAAGACGACTAGGGCATGTCAAAGGTCTCGGTTGGGGCCCAAAGCCAAAATTGAGAAGTAATAATAGCTTGTCATCAAGTTCATCCTACGCACAAAAAGAACACGAGCAAGCAGTTGAGATTAGGATTTTAAAAGAACGACTTGAATAA
mRNA sequence
ATGTATGAGGTTGTGTTGGGAAGACGACTAGGGCATGTCAAAGGTCTCGGTTGGGGCCCAAAGCCAAAATTGAGAAGTAATAATAGCTTGTCATCAAGTTCATCCTACGCACAAAAAGAACACGAGCAAGCAGTTGAGATTAGGATTTTAAAAGAACGACTTGAATAA
Coding sequence (CDS)
ATGTATGAGGTTGTGTTGGGAAGACGACTAGGGCATGTCAAAGGTCTCGGTTGGGGCCCAAAGCCAAAATTGAGAAGTAATAATAGCTTGTCATCAAGTTCATCCTACGCACAAAAAGAACACGAGCAAGCAGTTGAGATTAGGATTTTAAAAGAACGACTTGAATAA
Protein sequence
MYEVVLGRRLGHVKGLGWGPKPKLRSNNSLSSSSSYAQKEHEQAVEIRILKERLE
Homology
BLAST of HG10010136 vs. NCBI nr
Match:
KAA0042154.1 (NBS-LRR type resistance protein [Cucumis melo var. makuwa] >TYK26728.1 NBS-LRR type resistance protein [Cucumis melo var. makuwa])
HSP 1 Score: 54.7 bits (130), Expect = 3.0e-04
Identity = 23/38 (60.53%), Postives = 31/38 (81.58%), Query Frame = 0
Query: 1 MYEVVLGRRLGHVKGLGWGPKPKLRSNNSLSSSSSYAQ 39
+YE VLGRR G+ KGLGWGP+PK R N+ SSS++++Q
Sbjct: 119 IYETVLGRRSGYSKGLGWGPRPKSRKTNASSSSTTFSQ 156
BLAST of HG10010136 vs. ExPASy TrEMBL
Match:
A0A5D3DT75 (NBS-LRR type resistance protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold124G00130 PE=4 SV=1)
HSP 1 Score: 54.7 bits (130), Expect = 1.4e-04
Identity = 23/38 (60.53%), Postives = 31/38 (81.58%), Query Frame = 0
Query: 1 MYEVVLGRRLGHVKGLGWGPKPKLRSNNSLSSSSSYAQ 39
+YE VLGRR G+ KGLGWGP+PK R N+ SSS++++Q
Sbjct: 119 IYETVLGRRSGYSKGLGWGPRPKSRKTNASSSSTTFSQ 156
BLAST of HG10010136 vs. ExPASy TrEMBL
Match:
A0A5D3DB16 (CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold480G001130 PE=4 SV=1)
HSP 1 Score: 52.4 bits (124), Expect = 7.1e-04
Identity = 28/56 (50.00%), Postives = 38/56 (67.86%), Query Frame = 0
Query: 1 MYEVVLGRRLGHVKGLGWGPKPKLRSNNSLSSSSSYAQKEHEQAVEIRI-LKERLE 56
+Y+ VLGRR G+ KGLGWGPKPK R S SSSS+ + ++ +E++ L E LE
Sbjct: 371 IYDQVLGRRPGYSKGLGWGPKPKARRTASASSSSTSCSQSTQKEIELQAKLHEALE 426
BLAST of HG10010136 vs. ExPASy TrEMBL
Match:
A0A5A7T4Y6 (CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold3921G00160 PE=4 SV=1)
HSP 1 Score: 52.4 bits (124), Expect = 7.1e-04
Identity = 28/56 (50.00%), Postives = 38/56 (67.86%), Query Frame = 0
Query: 1 MYEVVLGRRLGHVKGLGWGPKPKLRSNNSLSSSSSYAQKEHEQAVEIRI-LKERLE 56
+Y+ VLGRR G+ KGLGWGPKPK R S SSSS+ + ++ +E++ L E LE
Sbjct: 275 IYDQVLGRRPGYSKGLGWGPKPKARRTASASSSSTSCSQSTQKEIELQAKLHEALE 330
BLAST of HG10010136 vs. ExPASy TrEMBL
Match:
A0A5A7UKJ2 (CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold318G00870 PE=4 SV=1)
HSP 1 Score: 52.4 bits (124), Expect = 7.1e-04
Identity = 28/56 (50.00%), Postives = 38/56 (67.86%), Query Frame = 0
Query: 1 MYEVVLGRRLGHVKGLGWGPKPKLRSNNSLSSSSSYAQKEHEQAVEIRI-LKERLE 56
+Y+ VLGRR G+ KGLGWGPKPK R S SSSS+ + ++ +E++ L E LE
Sbjct: 275 IYDQVLGRRPGYSKGLGWGPKPKARRTASASSSSTSCSQSTQKEIELQAKLHEALE 330
BLAST of HG10010136 vs. ExPASy TrEMBL
Match:
A0A5A7U5R2 (CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold673G00320 PE=4 SV=1)
HSP 1 Score: 52.4 bits (124), Expect = 7.1e-04
Identity = 28/52 (53.85%), Postives = 38/52 (73.08%), Query Frame = 0
Query: 5 VLGRRLGHVKGLGWGPKPKLRSNNSLSSSSSYAQKEHEQAVEIRI-LKERLE 56
VLGRR G++KGLGWGPKPK+R S SSSS+ + E+ +E++ L+E LE
Sbjct: 280 VLGRRPGYLKGLGWGPKPKVRRTASASSSSTSCSQSTEKEIELQAKLQEALE 331
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
KAA0042154.1 | 3.0e-04 | 60.53 | NBS-LRR type resistance protein [Cucumis melo var. makuwa] >TYK26728.1 NBS-LRR t... | [more] |
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A5D3DT75 | 1.4e-04 | 60.53 | NBS-LRR type resistance protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_... | [more] |
A0A5D3DB16 | 7.1e-04 | 50.00 | CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_... | [more] |
A0A5A7T4Y6 | 7.1e-04 | 50.00 | CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_... | [more] |
A0A5A7UKJ2 | 7.1e-04 | 50.00 | CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_... | [more] |
A0A5A7U5R2 | 7.1e-04 | 53.85 | CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_... | [more] |
Match Name | E-value | Identity | Description | |