HG10009771 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview
NameHG10009771
Typegene
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
DescriptionCCHC-type domain-containing protein
LocationChr06: 10064046 .. 10065049 (+)
RNA-Seq ExpressionHG10009771
SyntenyHG10009771
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGTCCTCAGCGCAGGGCATGGCTTTTTGACAAACATTTGCTAATCCTGGAAGAACCGAATGTTGACTTGAAGCTTTCAGATTTGAAATTCGACAAAGTAACATTCTGGATCCGCTTGTTGGATCTTCCCTTTGGTTTCCAGAATAAAACAATGGCAAGGAGGATTGGGGAAGCAATTGGTGTTTTTCTTGATGTGGACTGCAATCAAGATGGTTTGTGTTGGGGAGAGTCTATGAGAATCAAAGTTCAATTTGATATTTCTAAGCCACTCTGAAGTGGTATCAAGGTTCAAACTGCGGATGGAAAAGGAGAAAGATAGGTGTCAATTCGTTATGAAAGACTGCTTGATTTTTGTTACCTTTGTGGTTGTATTGACCATGTTGCCAAAGATTGTAATTCAGATTTATCTATTCTTGATGGAAAAAGAAGGAGCAACCCTCAGTTGGTCCTTGGCTAAGGTTTCAAGGGGCTACAAGATTACCAAAGAAATTATCCGACTCTCCTGAAGACCCCATCTTCCAGAATGATCTCCACTCCTCTCATCCTTCTAACCCAATTACTCCCCTTGTTGTTGAACAAGCTCCCTCAAACTCACCTGTAGTTAACCCTCCAAGTCCTCTTGTGATTGATCTAAATAAAACTCAAGTGTCTGAGATTCAGTGTGAGAATAGATCTTTATTTGATGCCCCCTTGGTCCCTTCGCTCTCCTCCACTTTATTAAACTCTGTTCACCCTTCCTTGGGTTCTTTTCATCAAGATTCTAACTGCTTCACCTTTCAAATGTCTGATACCTCCCTGGAAAAACCTGTTCAAGATGAACGTATTTATATTATTCTGCCTTGTAAAACCACTAAATCGAGGAAGAAAAAAAAACAAGTTCAATTTTTGGTTCTCCAACTCGTTACGTCTGCTTGGGTCAAGTTGGAAAAAAAACATCCTTGTGATGATGTACTAGATGTTCTCAGAAGAAAGAAATTGTGGGCCTCCTCTCTAGAACAATGA

mRNA sequence

ATGGGTCCTCAGCGCAGGGCATGGCTTTTTGACAAACATTTGCTAATCCTGGAAGAACCGAATGTTGACTTGAAGCTTTCAGATTTGAAATTCGACAAAGTAACATTCTGGATCCGCTTGTTGGATCTTCCCTTTGGTTTCCAGAATAAAACAATGGCAAGGAGGATTGGGGAAGCAATTGGTGTTTTTCTTGATGTGGACTGCAATCAAGATGGTTTGTGTTGGGGAGAGTCTATGAGAATCAAAAAGGAGCAACCCTCAGTTGGTCCTTGGCTAAGGTTTCAAGGGGCTACAAGATTACCAAAGAAATTATCCGACTCTCCTGAAGACCCCATCTTCCAGAATGATCTCCACTCCTCTCATCCTTCTAACCCAATTACTCCCCTTGTTGTTGAACAAGCTCCCTCAAACTCACCTGTAGTTAACCCTCCAAGTCCTCTTGTGATTGATCTAAATAAAACTCAAGTGTCTGAGATTCAGTGTGAGAATAGATCTTTATTTGATGCCCCCTTGGTCCCTTCGCTCTCCTCCACTTTATTAAACTCTGTTCACCCTTCCTTGGGTTCTTTTCATCAAGATTCTAACTGCTTCACCTTTCAAATGTCTGATACCTCCCTGGAAAAACCTGTTCAAGATGAACGTATTTATATTATTCTGCCTTGTAAAACCACTAAATCGAGGAAGAAAAAAAAACAAGTTCAATTTTTGGTTCTCCAACTCGTTACGTCTGCTTGGGTCAAGTTGGAAAAAAAACATCCTTGTGATGATGTACTAGATGTTCTCAGAAGAAAGAAATTGTGGGCCTCCTCTCTAGAACAATGA

Coding sequence (CDS)

ATGGGTCCTCAGCGCAGGGCATGGCTTTTTGACAAACATTTGCTAATCCTGGAAGAACCGAATGTTGACTTGAAGCTTTCAGATTTGAAATTCGACAAAGTAACATTCTGGATCCGCTTGTTGGATCTTCCCTTTGGTTTCCAGAATAAAACAATGGCAAGGAGGATTGGGGAAGCAATTGGTGTTTTTCTTGATGTGGACTGCAATCAAGATGGTTTGTGTTGGGGAGAGTCTATGAGAATCAAAAAGGAGCAACCCTCAGTTGGTCCTTGGCTAAGGTTTCAAGGGGCTACAAGATTACCAAAGAAATTATCCGACTCTCCTGAAGACCCCATCTTCCAGAATGATCTCCACTCCTCTCATCCTTCTAACCCAATTACTCCCCTTGTTGTTGAACAAGCTCCCTCAAACTCACCTGTAGTTAACCCTCCAAGTCCTCTTGTGATTGATCTAAATAAAACTCAAGTGTCTGAGATTCAGTGTGAGAATAGATCTTTATTTGATGCCCCCTTGGTCCCTTCGCTCTCCTCCACTTTATTAAACTCTGTTCACCCTTCCTTGGGTTCTTTTCATCAAGATTCTAACTGCTTCACCTTTCAAATGTCTGATACCTCCCTGGAAAAACCTGTTCAAGATGAACGTATTTATATTATTCTGCCTTGTAAAACCACTAAATCGAGGAAGAAAAAAAAACAAGTTCAATTTTTGGTTCTCCAACTCGTTACGTCTGCTTGGGTCAAGTTGGAAAAAAAACATCCTTGTGATGATGTACTAGATGTTCTCAGAAGAAAGAAATTGTGGGCCTCCTCTCTAGAACAATGA

Protein sequence

MGPQRRAWLFDKHLLILEEPNVDLKLSDLKFDKVTFWIRLLDLPFGFQNKTMARRIGEAIGVFLDVDCNQDGLCWGESMRIKKEQPSVGPWLRFQGATRLPKKLSDSPEDPIFQNDLHSSHPSNPITPLVVEQAPSNSPVVNPPSPLVIDLNKTQVSEIQCENRSLFDAPLVPSLSSTLLNSVHPSLGSFHQDSNCFTFQMSDTSLEKPVQDERIYIILPCKTTKSRKKKKQVQFLVLQLVTSAWVKLEKKHPCDDVLDVLRRKKLWASSLEQ
Homology
BLAST of HG10009771 vs. NCBI nr
Match: XP_022156185.1 (uncharacterized protein LOC111023135 [Momordica charantia] >XP_022156186.1 uncharacterized protein LOC111023135 [Momordica charantia])

HSP 1 Score: 97.8 bits (242), Expect = 1.5e-16
Identity = 40/75 (53.33%), Postives = 55/75 (73.33%), Query Frame = 0

Query: 8   WLFDKHLLILEEPNVDLKLSDLKFDKVTFWIRLLDLPFGFQNKTMARRIGEAIGVFLDVD 67
           W FDK L++L++P     +S+L+F++V FWI L DLP  + NKTMA R+G AIG F+DVD
Sbjct: 100 WFFDKALIVLQKPCSSKNISELEFNRVAFWIHLFDLPMSWLNKTMAIRLGNAIGNFVDVD 159

Query: 68  CNQDGLCWGESMRIK 83
           CN+ G  WG S+RI+
Sbjct: 160 CNEKGFSWGASLRIR 174

BLAST of HG10009771 vs. NCBI nr
Match: XP_028063997.1 (uncharacterized protein LOC114267184 [Camellia sinensis])

HSP 1 Score: 83.2 bits (204), Expect = 3.8e-12
Identity = 40/106 (37.74%), Postives = 62/106 (58.49%), Query Frame = 0

Query: 8   WLFDKHLLILEEPNVDLKLSDLKFDKVTFWIRLLDLPFGFQNKTMARRIGEAIGVFLDVD 67
           W FDKHLL+L E + ++  SD++   V FW+ + +LP    NK + + IG ++G F+D+D
Sbjct: 98  WTFDKHLLMLGEMDPNIPPSDIRLTPVQFWVHVCNLPLILMNKEVGQIIGNSVGQFIDMD 157

Query: 68  CNQDGLCWGESMRIKKEQPSVGPWLRFQGATRLPKKLSDSPEDPIF 114
              DG+ WG +MRI+K   ++  W       R   KLS S  DP++
Sbjct: 158 FEDDGIAWGRTMRIRK---AIDVW----KPLRPGMKLSLSSADPLW 196

BLAST of HG10009771 vs. NCBI nr
Match: XP_035543571.1 (uncharacterized protein At4g02000-like [Juglans regia])

HSP 1 Score: 81.3 bits (199), Expect = 1.5e-11
Identity = 31/77 (40.26%), Postives = 50/77 (64.94%), Query Frame = 0

Query: 8  WLFDKHLLILEEPNVDLKLSDLKFDKVTFWIRLLDLPFGFQNKTMARRIGEAIGVFLDVD 67
          WLFD HL +L++ + +++ S + FD    WI++L+LP  + NK M   IG ++G  L+VD
Sbjct: 9  WLFDNHLFVLKDFDGEMQPSKIDFDHACLWIQMLNLPLSYMNKEMGELIGRSLGEVLEVD 68

Query: 68 CNQDGLCWGESMRIKKE 85
            +DGL WG  +R++ E
Sbjct: 69 VQEDGLAWGRCLRVRVE 85

BLAST of HG10009771 vs. NCBI nr
Match: XP_021770736.1 (uncharacterized protein LOC110734918 [Chenopodium quinoa])

HSP 1 Score: 81.3 bits (199), Expect = 1.5e-11
Identity = 36/77 (46.75%), Postives = 53/77 (68.83%), Query Frame = 0

Query: 6   RAWLFDKHLLILEEPNVDLKLSDLKFDKVTFWIRLLDLPFGFQNKTMARRIGEAIGVFLD 65
           R W FD  +L+L+E   D + SD++F+  +FWIRL+D+PFG +NK  AR +G+ IG  L+
Sbjct: 42  RPWAFDNQILLLKETKADEQPSDVEFNSCSFWIRLIDVPFGRRNKQYAREVGDCIGECLE 101

Query: 66  VDCNQDGLCWGESMRIK 83
           VD + D L W + MR+K
Sbjct: 102 VD-DFDSLGWEKFMRVK 117

BLAST of HG10009771 vs. NCBI nr
Match: XP_021738182.1 (uncharacterized protein LOC110704671 [Chenopodium quinoa])

HSP 1 Score: 79.7 bits (195), Expect = 4.3e-11
Identity = 35/77 (45.45%), Postives = 52/77 (67.53%), Query Frame = 0

Query: 6   RAWLFDKHLLILEEPNVDLKLSDLKFDKVTFWIRLLDLPFGFQNKTMARRIGEAIGVFLD 65
           R W FDK +L+L+  + D + S++  +K  FW+R+LD+PFG +N+  AR +GEA+G FL+
Sbjct: 69  RTWTFDKQILLLKSMDGDEQPSEIVIEKCPFWVRVLDVPFGRRNEAFAREVGEAVGGFLE 128

Query: 66  VDCNQDGLCWGESMRIK 83
            D  +D   W E MRIK
Sbjct: 129 FD-EEDPQGWDEFMRIK 144

BLAST of HG10009771 vs. ExPASy TrEMBL
Match: A0A6J1DU55 (uncharacterized protein LOC111023135 OS=Momordica charantia OX=3673 GN=LOC111023135 PE=4 SV=1)

HSP 1 Score: 97.8 bits (242), Expect = 7.3e-17
Identity = 40/75 (53.33%), Postives = 55/75 (73.33%), Query Frame = 0

Query: 8   WLFDKHLLILEEPNVDLKLSDLKFDKVTFWIRLLDLPFGFQNKTMARRIGEAIGVFLDVD 67
           W FDK L++L++P     +S+L+F++V FWI L DLP  + NKTMA R+G AIG F+DVD
Sbjct: 100 WFFDKALIVLQKPCSSKNISELEFNRVAFWIHLFDLPMSWLNKTMAIRLGNAIGNFVDVD 159

Query: 68  CNQDGLCWGESMRIK 83
           CN+ G  WG S+RI+
Sbjct: 160 CNEKGFSWGASLRIR 174

BLAST of HG10009771 vs. ExPASy TrEMBL
Match: A0A6P9E8B9 (uncharacterized protein At4g02000-like OS=Juglans regia OX=51240 GN=LOC118347663 PE=4 SV=1)

HSP 1 Score: 81.3 bits (199), Expect = 7.1e-12
Identity = 31/77 (40.26%), Postives = 50/77 (64.94%), Query Frame = 0

Query: 8  WLFDKHLLILEEPNVDLKLSDLKFDKVTFWIRLLDLPFGFQNKTMARRIGEAIGVFLDVD 67
          WLFD HL +L++ + +++ S + FD    WI++L+LP  + NK M   IG ++G  L+VD
Sbjct: 9  WLFDNHLFVLKDFDGEMQPSKIDFDHACLWIQMLNLPLSYMNKEMGELIGRSLGEVLEVD 68

Query: 68 CNQDGLCWGESMRIKKE 85
            +DGL WG  +R++ E
Sbjct: 69 VQEDGLAWGRCLRVRVE 85

BLAST of HG10009771 vs. ExPASy TrEMBL
Match: A0A803MW53 (Uncharacterized protein OS=Chenopodium quinoa OX=63459 PE=4 SV=1)

HSP 1 Score: 80.5 bits (197), Expect = 1.2e-11
Identity = 36/77 (46.75%), Postives = 49/77 (63.64%), Query Frame = 0

Query: 6   RAWLFDKHLLILEEPNVDLKLSDLKFDKVTFWIRLLDLPFGFQNKTMARRIGEAIGVFLD 65
           R W+FD  +L+L+E     + S++ FD   FWIRLLD+PFG ++  +A  IG  IG  +D
Sbjct: 98  RPWVFDNQILLLKEMCATEQPSEVSFDACPFWIRLLDVPFGMRSSRVAHEIGNCIGECID 157

Query: 66  VDCNQDGLCWGESMRIK 83
           VD   D LCW E MR+K
Sbjct: 158 VD-ESDPLCWDEFMRVK 173

BLAST of HG10009771 vs. ExPASy TrEMBL
Match: A0A803MN93 (Uncharacterized protein OS=Chenopodium quinoa OX=63459 PE=4 SV=1)

HSP 1 Score: 79.7 bits (195), Expect = 2.1e-11
Identity = 35/77 (45.45%), Postives = 52/77 (67.53%), Query Frame = 0

Query: 6   RAWLFDKHLLILEEPNVDLKLSDLKFDKVTFWIRLLDLPFGFQNKTMARRIGEAIGVFLD 65
           R W FDK +L+L+  + D + S++  +K  FW+R+LD+PFG +N+  AR +GEA+G FL+
Sbjct: 151 RTWTFDKQILLLKSMDGDEQPSEIVIEKCPFWVRVLDVPFGRRNEAFAREVGEAVGGFLE 210

Query: 66  VDCNQDGLCWGESMRIK 83
            D  +D   W E MRIK
Sbjct: 211 FD-EEDPQGWDEFMRIK 226

BLAST of HG10009771 vs. ExPASy TrEMBL
Match: A0A6J1BSZ1 (uncharacterized protein LOC111005481 OS=Momordica charantia OX=3673 GN=LOC111005481 PE=4 SV=1)

HSP 1 Score: 79.0 bits (193), Expect = 3.5e-11
Identity = 34/82 (41.46%), Postives = 48/82 (58.54%), Query Frame = 0

Query: 1   MGPQRRAWLFDKHLLILEEPNVDLKLSDLKFDKVTFWIRLLDLPFGFQNKTMARRIGEAI 60
           MGP    W FD+ L+I++ P    K  D+ F  V+ W+   DL     NKTMA R+G AI
Sbjct: 98  MGP----WTFDRALIIIDNPVSLTKPLDMDFRNVSLWVHFFDLSLACMNKTMATRLGNAI 157

Query: 61  GVFLDVDCNQDGLCWGESMRIK 83
           G+F DV+ N +  CWG  +R++
Sbjct: 158 GLFEDVESNANNFCWGSCLRVR 175

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_022156185.11.5e-1653.33uncharacterized protein LOC111023135 [Momordica charantia] >XP_022156186.1 uncha... [more]
XP_028063997.13.8e-1237.74uncharacterized protein LOC114267184 [Camellia sinensis][more]
XP_035543571.11.5e-1140.26uncharacterized protein At4g02000-like [Juglans regia][more]
XP_021770736.11.5e-1146.75uncharacterized protein LOC110734918 [Chenopodium quinoa][more]
XP_021738182.14.3e-1145.45uncharacterized protein LOC110704671 [Chenopodium quinoa][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6J1DU557.3e-1753.33uncharacterized protein LOC111023135 OS=Momordica charantia OX=3673 GN=LOC111023... [more]
A0A6P9E8B97.1e-1240.26uncharacterized protein At4g02000-like OS=Juglans regia OX=51240 GN=LOC118347663... [more]
A0A803MW531.2e-1146.75Uncharacterized protein OS=Chenopodium quinoa OX=63459 PE=4 SV=1[more]
A0A803MN932.1e-1145.45Uncharacterized protein OS=Chenopodium quinoa OX=63459 PE=4 SV=1[more]
A0A6J1BSZ13.5e-1141.46uncharacterized protein LOC111005481 OS=Momordica charantia OX=3673 GN=LOC111005... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR025558Domain of unknown function DUF4283PFAMPF14111DUF4283coord: 5..82
e-value: 2.0E-11
score: 43.6

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
HG10009771.1HG10009771.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005488 binding