Cucsat.G2634 (gene) Cucumber (B10) v3

Overview
NameCucsat.G2634
Typegene
OrganismCucumis sativus L. var. sativus cv B10 (Cucumber (B10) v3)
DescriptionRNA-directed DNA methylation 4-like isoform X1
Locationctg1006: 495995 .. 501622 (+)
RNA-Seq ExpressionCucsat.G2634
SyntenyCucsat.G2634
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
TGCAAATATTAAGCCCACAATGGTTAATTTAATTTCAGACATTTGATTCCGAAGAGGAGACCTCCGTAGTGTTAAGTCGGAGGACATTGTTATTACTCTTCTTCTTTCCTTTTTAATAAGAAAAAAAGGAGAGAAAATAAGAGAAAAGGGTAACCACGCACGCTGCCCTCTCCATTGGACTTTCGAAGTTTCTCTTCCGCTCACAATCTCTCCTTCACGCCGACAACCCTCCTCCGACGCCGGACGACGACCAGCGCGCCACGCCAGCGACCCTCAACTTTTAAATATCCTTTGCCGTCAGTCTAGGTCGGGGCTGTCCTGTGTCATTCCGTCCGTGGTCGTTGAGCCGGGCCAGCTTTGAGACGCGTCGTGTTGCTTTCTGCCTGTAGATCGTCGTAATTTGAGGTCAGTTTTGCACGTTGGGAGTTGATTCTCCGAAATCTTTCCACTATTCCACTATGGATCATAAGTATATTACCAGCTTTCAATTTGAATGCTATTCAATGTTTAATTCCAAGACTTAAAGTTAAAGTTTACTTGGAGATATTTTGTCATTCTGTCTAATTATTGCTAAAGCTTGTCCAAATAATTTATCTTGAATGTCCAAGGAAGCAGCCATACAATTATGTATACAACCCATTGAAAATTTCATCAACCTTAATAGAATTTTGGGTTTAGATAATATTCCACTGCATGCAAAGGGCGATGCAACTGAAGCTCCCATCATTGTAAATTAGTTTTGTACTTTTCTTCCTTACCATCAAAGGATTTAGCGATGGTCTCATTAGCTCTATCCATAACCTCATAAATGGTCGAGCTTCTTCTTATGTTTTGAGTTTAGAAAGATATTTGTTCTTCCTTGAAAGAGAGGATAACAGGAGAGGGATTTCGATATTGTATCAAGGAATTCATTCCTATACTATCATCAATAATATTAGTAGAAATTACATACAATAGTTGGCTTCCATCATAATGTCATGCAAGTTGTAGTAAAGCGATTCTTCACTGGTCTAACTAATTCCTTTTGATTAGTAAACCGCCTCATCATGTTTAACAATCCTAGACTAACATAAATGAAACTGCTAACATACATGCCTCTTTTTAATGTTTTGCAAATATGTGGGATCTTGTATATATCCTCCAACATCAAATCACTGAGGGCACATGGAGACCAAATTAATTTTGATCATTTTGCTTCTAACAATTGCCTTATAAACAAAGTAAAATAAGAACAATATTTAGGCTTCTTAGTTGTGTAAGCATAAGACTAATAAATTTAATAAAGTGTTGGTACTTTGCATTATTTCTTACCTGCCATAACATTTGCTGAAGCACTATGAATAAAAACTTGTTCGACATTAACTTTTCCGATGCAATAGCAACTTGTTTGAAATTAACTTTTCCGATGCAATAGCAACTTGTTTGACATTAGCTTTTCCAATGCGCTCTATGAAATTGTCAAGCGACTCGAACATTTTCTTTCCATCCTTCACATAAGATGAAGCAATGAATACGGTGCCTTAGGACTATTATCTAAAAAGTTAATCAATGTCCTATGTCTTCTATTTGTCCATCCATCAGCCATAACGGTGTGTCCAACCTTTGCCGACTTTGCCTTATGGCTCTTCATCAACTCATTTGCAGATTCCAATTCCTTTTTCAAACACGACACTCTCAATTCATGATACGATGGTGGTTTCAGTCCAGGACCAAATTGTCCTATTGCCTCAATCATAGGGGCAAAGCTATCATAAGTGCAAGTGTGTGGTGTTTGGCCATTTTTTATTACTACCTTTTTGCTTGAAATCATTGAACTTCTACATTCACATCATTATAACAGTGTCTTCCATAGTTCCCTATTCCATCCTTGTTTCTTTGTGTTGTTTGCGTTTTGTTGCAGCTCATTCGTTAGGATGAATTCCCAATGCATACCTTCCTGTTAATGTTTCGTTTTAGGTTGAACTATGCTTTTAGGTTTTTATTTTTATCGTTGGTTGCTTTTGTTTTGATGCCACTGTTGGCACTTTTATATCTCTAAATGGAAGTCTTCAGTTTTGAAGAAAGCAAGAAGAGAGAGAAAAAAAAGAGCTTGTAGATTTGGTAAAAAAAGCAGTCTTCATAGTGTGTAGAAAAGTTACTTATTGTTTCCTCATTTAAGATGTTGCTCACGAAGGTTATAAATATGTATTGTACTTACTCATGGTGTTTGTTGCTGTCTTCTGTGTTTGAATGCAGGTTCTTTCTTCATCATTGCTTGCCCTAACCACATTAATTGATGCCATAGTGAGGGTCGGTCTGAACGATCAGGGACTGGAAAAAGCAGTGGTGAAACAAGGTGTGCTTCCAATTCTAGGGAGACCGTTGAAGCCTAAAAGTATTCAGTCTTAAGGGGTCTTGCCAAAAATATTCCTCATGCTTTTAGAGAATAGAACATAAAACTATTGCCCGTCGTATGGCGCTCATTGGTGAGAGCTCTTCTTCTGTTTCCAAACTCGTGGACGAAAAGCCAGTTTTAGTTAGGGTTAAGCGCAAAGCTTCCCAATCTCGACTTGATGCATTATGTGAGTTCTGTTTAGACACTCTCTTTCATTCCCTTCCTCAAAGAATTTCTTTTGCTAATTTAGGTTTGTGATTTGCATAGTTCAGCTCTTTTAACTCTTGGAGATCACATTCTTCTATTGTCTTCTTATTAGCCATCTCCTTCGATGTTTAATTATTTATGAGCCATCGAATGAAGTCTGAATTGTTCCATGTTTGCATTGACCTTTGTGATGATTTTCAGCCTATTGTTATGTGGTGCACACATAGTTATAGTCAATTTCTTTGTTCCCTTGCCCCGATATATTTATATACTTTTTGCATTGTTTATGTATTCTATCCCCAAAAATTTTATGCTCTAGGGCTGGAAATCAATGAGAGGCCATTGAAGCGACCACTCTTGGATTTTGAGAATTTATCAATTTCAGAAACACTCCACAAAGGTCTGATCATTTCTAAACCTGTACTTGTGTTCTTTTTTTTTTCTTTACACCACAAGTCGATCTTTCCTGAGTTGTTTGTAATTTCACATGGGTCAAATGCTTGTTTTACCTTTGTAATTATCTCTTGCACCGTAAGTACCACTTAGCCATTAATAAACATGTTCATGCAACAATGTATGGTTCTTCACGAATATTCAGTCGCAGATTATACGTAGTATTTTTCTTCTTCTGGGGGGATGTAAATTTGTTGTTGCATGGATTCTTTGTGGGAAAACTGTGTCGACCTTTATATGAAAAGTAATGGGGTGAATTTCATTGTTGTTATTGTTTCTTCTTTTTCTATGAGGGAGGGGAGAAGTGGATTTATTATCTTTATGGTTCTTGCCAATTGATTAAACGTCTCTATTTGGTTGGGGTATCAACCTCGAAAATGATTTTACTGTATTTCACGGTTATATGGTCAATGGAGTATGATTTAAATATAAATCTATTTAACTCCCTATCCCTAATTGGATATCTTTCTCTTGCATCAGAGGAATTAAAGACCAAGAAGATATTTGTACAGCATGTGGAGACATTAAGAAGCTCTGATGCCACTGTTGACATTGTGCAGTCTTTTGTGGTCAGTACTCTAGTTAGTTATTAATCTTCTTCTTCAATATTTTAGCTCTCTTCTACATCAGTAACCATTTTTCCTTTAGGCACCTGATGCTGCTTCCACCATTGAAAATAACCTAAAGAATGAGGAGCGCAGAAGAAATTTTAAGAGAGAGATTGTATGCTGTCCTATCTATTTGCTTGTTTGGTTCTTAGTTTGTGCGGTACTTATTTGGTATTTTCTCTCACCTTAACTTGTATTATGCAGTCGAGACAAGATCAGTTGTTGGTTAAAGCTAGACAAGAACAGGAGGTATGATGTATGATGACATTCCTTTAATGCTCTTAAAAAGATGAATATTAACATTGTTTGATCAGAAGATTTTTGGTCAGATAAGATTATGAACCCACTTGCACTTATAGATGGCATTCTATAGTATGATTAACTTGTTTTCATATATTGAGCTTCTAATTTATTTTGGTGAGGTATCATGGTTTCTTTGTGCTACTGCTTTCTCCTTTTATCAGCTTGCGGCAAAAAACGCTAGATTTGAGCAGATATGGAGAAGTAGGAAAGGGGTTAAAGATGAAAAAGATGACCAGTTACGTGATGTATATCATATCTATGATATTGTTCGTCTTGATACAAATGAAATATCAAGTGAATCCCCAAAGCAGGAGTGAGTTCTACTATATTGATGTTATTCGGTCTCAATACTTTACAAAATCCTCATTTATGTGGGCAAATTTTATTTTGTTATTAGTGCAGACAAATGTCTCTGGAGGATCAGAGTATGTTATCAAGTTACTTGCCGTTACTAAGGGAGTTTATTCCAAGTGCCGCTGCTGAAATTGAATCAGATATAGATGCAAACATGATGAAACAAAATTGTAAGTTCCAATTCTTCTAGCAGTCACTTGAATTCTATGGCATACAACTTTAGTTATGAATGATGCAACTATGATCCTATGCAATTCAACAGTAGAAAGTTGGATGAAGAGGATAATTATTATTCATCCGTTATTTGTTTTTCCAGCTATCGTCTCCTGTTCTTGCTTTGCGCAAGTTTTTTTCCTTACCTCACTCACTTTTTAGTTTCATCTATGTATTTGGGATTTTATTTTAATTCCTGTTGTAATATTTTGATATTTCATTTATATATGAAATGGTTTTTTATAAAAAAGAAAATGTAATTTCTTATTGTTATGTCTCTGTCTTCACTTCTTCAGTGCCTGTAGATGATTATGTGTATGACTACTATACTGTGAAGAATGATGTGGAGATTGCTGAAGACGATGCCTCCCATCCATTTCCTTTGTGCGTCTTTCTTCCTTTTCCCCTTTCTGCTATGGTTTACACTTCATGTTTTTTTTAATCATTTCATATATTTTTTTTCAGGATACAAGTTGATGACTTAGATCATGATGGGCCTAGTGACTCAGATTATGAAACTGATGATTCAAATGGTAAAAACCAATGACCATTTCCTTCTAGTTTACAAACATAAGTTATATCTAATTTCTTTTATGCTTTTTGTCTTCTTTGGTTTCAGCTGAAAACAATCCGTGCTTCGATTACCCAGATGAGGAAGAGTTGGAGAGTACATCTTCAAATGATGAATTGGAAGATAGTGATGATGAGAAGCAGTCCTCAGAAAGTAATGATGTAGAAGAAGATGAGTTATCGGAGGAGGAGAAAGTTGAATTATATGAGGATGAAATATATGATGATTTTGATGAAGAGGATGGTGCTGATAGCTTTGATTATGATAGTAATGTTGGTCATGATGAAGGTGAAGATTGGAGATGGTCCTATCGTTGAATTTTTCACTAGAGATAGAACAAGCTTTTCATCCTTGTGAATATATATATCTTTTCTTAATTAGGATTTAGGGGAGGAATGCTTGCTATGATTAGGGATGTAATGTTGGAGATTTAGAGTCTTTTTTACTTGATTAGGGAAAAATGTTTAGATTTTTTAAAAAGCTGACTTTTATTTTATTTGGTTTTGATTGAACTTGTAAATTTTTAGTCGGTTTGGATGTCAAATATTTCAATTTCTTTTTTCTAAACGACTCATTTTTACCATTAAATACTTGAAATGTTGAAC

Coding sequence (CDS)

ATGGCATTCTATAGTATGATTAACTTGTTTTCATATATTGAGCTTCTAATTTATTTTGGTGAGGTATCATGGTTTCTTTGTGCTACTGCTTTCTCCTTTTATCAGCTTGCGGCAAAAAACGCTAGATTTGAGCAGATATGGAGAAGTAGGAAAGGGGTTAAAGATGAAAAAGATGACCAGTTACGTGATGTATATCATATCTATGATATTGTTCGTCTTGATACAAATGAAATATCAAGTGAATCCCCAAAGCAGGAACAAATGTCTCTGGAGGATCAGAGTATGTTATCAAGTTACTTGCCGTTACTAAGGGAGTTTATTCCAAGTGCCGCTGCTGAAATTGAATCAGATATAGATGCAAACATGATGAAACAAAATTTGCCTGTAGATGATTATGTGTATGACTACTATACTGTGAAGAATGATGTGGAGATTGCTGAAGACGATGCCTCCCATCCATTTCCTTTGATACAAGTTGATGACTTAGATCATGATGGGCCTAGTGACTCAGATTATGAAACTGATGATTCAAATGCTGAAAACAATCCGTGCTTCGATTACCCAGATGAGGAAGAGTTGGAGAGTACATCTTCAAATGATGAATTGGAAGATAGTGATGATGAGAAGCAGTCCTCAGAAAGTAATGATGTAGAAGAAGATGAGTTATCGGAGGAGGAGAAAGTTGAATTATATGAGGATGAAATATATGATGATTTTGATGAAGAGGATGGTGCTGATAGCTTTGATTATGATAGTAATGTTGGTCATGATGAAGGTGAAGATTGGAGATGGTCCTATCGTTGA

Protein sequence

MAFYSMINLFSYIELLIYFGEVSWFLCATAFSFYQLAAKNARFEQIWRSRKGVKDEKDDQLRDVYHIYDIVRLDTNEISSESPKQEQMSLEDQSMLSSYLPLLREFIPSAAAEIESDIDANMMKQNLPVDDYVYDYYTVKNDVEIAEDDASHPFPLIQVDDLDHDGPSDSDYETDDSNAENNPCFDYPDEEELESTSSNDELEDSDDEKQSSESNDVEEDELSEEEKVELYEDEIYDDFDEEDGADSFDYDSNVGHDEGEDWRWSYR
Homology
The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Q8GYP35.1e-5344.27RNA-directed DNA methylation 4 OS=Arabidopsis thaliana OX=3702 GN=RDM4 PE=1 SV=1[more]
Match NameE-valueIdentityDescription
XP_004139832.11.60e-21899.40RNA-directed DNA methylation 4 [Cucumis sativus] >KGN44279.1 hypothetical protei... [more]
KAA0051104.11.08e-20795.17RNA-directed DNA methylation 4-like isoform X1 [Cucumis melo var. makuwa] >TYK02... [more]
XP_008447116.11.46e-20794.56PREDICTED: RNA-directed DNA methylation 4-like isoform X1 [Cucumis melo] >XP_008... [more]
XP_008447118.14.31e-20493.96PREDICTED: RNA-directed DNA methylation 4-like isoform X2 [Cucumis melo][more]
XP_038885561.17.57e-18385.76RNA-directed DNA methylation 4 [Benincasa hispida] >XP_038885562.1 RNA-directed ... [more]
Match NameE-valueIdentityDescription
A0A0A0K5Q37.73e-21999.40Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G238430 PE=4 SV=1[more]
A0A5D3BU385.24e-20895.17RNA-directed DNA methylation 4-like isoform X1 OS=Cucumis melo var. makuwa OX=11... [more]
A0A1S4DWJ07.09e-20894.56RNA-directed DNA methylation 4-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC103... [more]
A0A1S3BG452.09e-20493.96RNA-directed DNA methylation 4-like isoform X2 OS=Cucumis melo OX=3656 GN=LOC103... [more]
A0A6J1GCH81.39e-16880.65RNA-directed DNA methylation 4 OS=Cucurbita moschata OX=3662 GN=LOC111452902 PE=... [more]
Match NameE-valueIdentityDescription
AT2G30280.13.6e-5444.27RNA-directed DNA methylation 4 [more]
InterPro
Analysis Name: InterPro Annotations of Cucumber (B10) v3
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 98..161
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 69..180
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 162..180
NoneNo IPR availablePANTHERPTHR31934ALPHA/BETA-HYDROLASES SUPERFAMILY PROTEINcoord: 1..180
NoneNo IPR availablePANTHERPTHR31934:SF2RNA-DIRECTED DNA METHYLATION 4coord: 1..180

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cucsat.G2634.T2Cucsat.G2634.T2mRNA
Cucsat.G2634.T3Cucsat.G2634.T3mRNA
Cucsat.G2634.T1Cucsat.G2634.T1mRNA
Cucsat.G2634.T5Cucsat.G2634.T5mRNA
Cucsat.G2634.T12Cucsat.G2634.T12mRNA
Cucsat.G2634.T8Cucsat.G2634.T8mRNA
Cucsat.G2634.T10Cucsat.G2634.T10mRNA
Cucsat.G2634.T16Cucsat.G2634.T16mRNA
Cucsat.G2634.T11Cucsat.G2634.T11mRNA
Cucsat.G2634.T7Cucsat.G2634.T7mRNA
Cucsat.G2634.T4Cucsat.G2634.T4mRNA
Cucsat.G2634.T9Cucsat.G2634.T9mRNA
Cucsat.G2634.T13Cucsat.G2634.T13mRNA
Cucsat.G2634.T6Cucsat.G2634.T6mRNA
Cucsat.G2634.T14Cucsat.G2634.T14mRNA
Cucsat.G2634.T15Cucsat.G2634.T15mRNA
Cucsat.G2634.T17Cucsat.G2634.T17mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006306 DNA methylation
biological_process GO:0009791 post-embryonic development
biological_process GO:0006355 regulation of transcription, DNA-templated
molecular_function GO:0003700 DNA-binding transcription factor activity