Cucsat.G2634.T2 (mRNA) Cucumber (B10) v3
Overview
Sequences
The following sequences are available for this feature:
Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.TGCAAATATTAAGCCCACAATGGTTAATTTAATTTCAGACATTTGATTCCGAAGAGGAGACCTCCGTAGTGTTAAGTCGGAGGACATTGTTATTACTCTTCTTCTTTCCTTTTTAATAAGAAAAAAAGGAGAGAAAATAAGAGAAAAGGGTAACCACGCACGCTGCCCTCTCCATTGGACTTTCGAAGTTTCTCTTCCGCTCACAATCTCTCCTTCACGCCGACAACCCTCCTCCGACGCCGGACGACGACCAGCGCGCCACGCCAGCGACCCTCAACTTTTAAATATCCTTTGCCGTCAGTCTAGGTCGGGGCTGTCCTGTGTCATTCCGTCCGTGGTCGTTGAGCCGGGCCAGCTTTGAGACGCGTCGTGTTGCTTTCTGCCTGTAGATCGTCGTAATTTGAGGTCAGTTTTGCACGTTGGGAGTTGATTCTCCGAAATCTTTCCACTATTCCACTATGGATCATAAGTATATTACCAGCTTTCAATTTGAATGCTATTCAATGTTTAATTCCAAGACTTAAAGTTAAAGTTTACTTGGAGATATTTTGTCATTCTGTCTAATTATTGCTAAAGCTTGTCCAAATAATTTATCTTGAATGTCCAAGGAAGCAGCCATACAATTATGTATACAACCCATTGAAAATTTCATCAACCTTAATAGAATTTTGGGTTTAGATAATATTCCACTGCATGCAAAGGGCGATGCAACTGAAGCTCCCATCATTGTAAATTAGTTTTGTACTTTTCTTCCTTACCATCAAAGGATTTAGCGATGGTCTCATTAGCTCTATCCATAACCTCATAAATGGTCGAGCTTCTTCTTATGTTTTGAGTTTAGAAAGATATTTGTTCTTCCTTGAAAGAGAGGATAACAGGAGAGGGATTTCGATATTGTATCAAGGAATTCATTCCTATACTATCATCAATAATATTAGTAGAAATTACATACAATAGTTGGCTTCCATCATAATGTCATGCAAGTTGTAGTAAAGCGATTCTTCACTGGTCTAACTAATTCCTTTTGATTAGTAAACCGCCTCATCATGTTTAACAATCCTAGACTAACATAAATGAAACTGCTAACATACATGCCTCTTTTTAATGTTTTGCAAATATGTGGGATCTTGTATATATCCTCCAACATCAAATCACTGAGGGCACATGGAGACCAAATTAATTTTGATCATTTTGCTTCTAACAATTGCCTTATAAACAAAGTAAAATAAGAACAATATTTAGGCTTCTTAGTTGTGTAAGCATAAGACTAATAAATTTAATAAAGTGTTGGTACTTTGCATTATTTCTTACCTGCCATAACATTTGCTGAAGCACTATGAATAAAAACTTGTTCGACATTAACTTTTCCGATGCAATAGCAACTTGTTTGAAATTAACTTTTCCGATGCAATAGCAACTTGTTTGACATTAGCTTTTCCAATGCGCTCTATGAAATTGTCAAGCGACTCGAACATTTTCTTTCCATCCTTCACATAAGATGAAGCAATGAATACGGTGCCTTAGGACTATTATCTAAAAAGTTAATCAATGTCCTATGTCTTCTATTTGTCCATCCATCAGCCATAACGGTGTGTCCAACCTTTGCCGACTTTGCCTTATGGCTCTTCATCAACTCATTTGCAGATTCCAATTCCTTTTTCAAACACGACACTCTCAATTCATGATACGATGGTGGTTTCAGTCCAGGACCAAATTGTCCTATTGCCTCAATCATAGGGGCAAAGCTATCATAAGTGCAAGTGTGTGGTGTTTGGCCATTTTTTATTACTACCTTTTTGCTTGAAATCATTGAACTTCTACATTCACATCATTATAACAGTGTCTTCCATAGTTCCCTATTCCATCCTTGTTTCTTTGTGTTGTTTGCGTTTTGTTGCAGCTCATTCGTTAGGATGAATTCCCAATGCATACCTTCCTGTTAATGTTTCGTTTTAGGTTGAACTATGCTTTTAGGTTTTTATTTTTATCGTTGGTTGCTTTTGTTTTGATGCCACTGTTGGCACTTTTATATCTCTAAATGGAAGTCTTCAGTTTTGAAGAAAGCAAGAAGAGAGAGAAAAAAAAGAGCTTGTAGATTTGGTAAAAAAAGCAGTCTTCATAGTGTGTAGAAAAGTTACTTATTGTTTCCTCATTTAAGATGTTGCTCACGAAGGTTATAAATATGTATTGTACTTACTCATGGTGTTTGTTGCTGTCTTCTGTGTTTGAATGCAGGTTCTTTCTTCATCATTGCTTGCCCTAACCACATTAATTGATGCCATAGTGAGGGTCGGTCTGAACGATCAGGGACTGGAAAAAGCAGTGGTGAAACAAGGTGTGCTTCCAATTCTAGGGAGACCGTTGAAGCCTAAAAGTATTCAGTCTTAAGGGGTCTTGCCAAAAATATTCCTCATGCTTTTAGAGAATAGAACATAAAACTATTGCCCGTCGTATGGCGCTCATTGGTGAGAGCTCTTCTTCTGTTTCCAAACTCGTGGACGAAAAGCCAGTTTTAGTTAGGGTTAAGCGCAAAGCTTCCCAATCTCGACTTGATGCATTATGTGAGTTCTGTTTAGACACTCTCTTTCATTCCCTTCCTCAAAGAATTTCTTTTGCTAATTTAGGTTTGTGATTTGCATAGTTCAGCTCTTTTAACTCTTGGAGATCACATTCTTCTATTGTCTTCTTATTAGCCATCTCCTTCGATGTTTAATTATTTATGAGCCATCGAATGAAGTCTGAATTGTTCCATGTTTGCATTGACCTTTGTGATGATTTTCAGCCTATTGTTATGTGGTGCACACATAGTTATAGTCAATTTCTTTGTTCCCTTGCCCCGATATATTTATATACTTTTTGCATTGTTTATGTATTCTATCCCCAAAAATTTTATGCTCTAGGGCTGGAAATCAATGAGAGGCCATTGAAGCGACCACTCTTGGATTTTGAGAATTTATCAATTTCAGAAACACTCCACAAAGGTCTGATCATTTCTAAACCTGTACTTGTGTTCTTTTTTTTTTCTTTACACCACAAGTCGATCTTTCCTGAGTTGTTTGTAATTTCACATGGGTCAAATGCTTGTTTTACCTTTGTAATTATCTCTTGCACCGTAAGTACCACTTAGCCATTAATAAACATGTTCATGCAACAATGTATGGTTCTTCACGAATATTCAGTCGCAGATTATACGTAGTATTTTTCTTCTTCTGGGGGGATGTAAATTTGTTGTTGCATGGATTCTTTGTGGGAAAACTGTGTCGACCTTTATATGAAAAGTAATGGGGTGAATTTCATTGTTGTTATTGTTTCTTCTTTTTCTATGAGGGAGGGGAGAAGTGGATTTATTATCTTTATGGTTCTTGCCAATTGATTAAACGTCTCTATTTGGTTGGGGTATCAACCTCGAAAATGATTTTACTGTATTTCACGGTTATATGGTCAATGGAGTATGATTTAAATATAAATCTATTTAACTCCCTATCCCTAATTGGATATCTTTCTCTTGCATCAGAGGAATTAAAGACCAAGAAGATATTTGTACAGCATGTGGAGACATTAAGAAGCTCTGATGCCACTGTTGACATTGTGCAGTCTTTTGTGGTCAGTACTCTAGTTAGTTATTAATCTTCTTCTTCAATATTTTAGCTCTCTTCTACATCAGTAACCATTTTTCCTTTAGGCACCTGATGCTGCTTCCACCATTGAAAATAACCTAAAGAATGAGGAGCGCAGAAGAAATTTTAAGAGAGAGATTGTATGCTGTCCTATCTATTTGCTTGTTTGGTTCTTAGTTTGTGCGGTACTTATTTGGTATTTTCTCTCACCTTAACTTGTATTATGCAGTCGAGACAAGATCAGTTGTTGGTTAAAGCTAGACAAGAACAGGAGGTATGATGTATGATGACATTCCTTTAATGCTCTTAAAAAGATGAATATTAACATTGTTTGATCAGAAGATTTTTGGTCAGATAAGATTATGAACCCACTTGCACTTATAGATGGCATTCTATAGTATGATTAACTTGTTTTCATATATTGAGCTTCTAATTTATTTTGGTGAGGTATCATGGTTTCTTTGTGCTACTGCTTTCTCCTTTTATCAGCTTGCGGCAAAAAACGCTAGATTTGAGCAGATATGGAGAAGTAGGAAAGGGGTTAAAGATGAAAAAGATGACCAGTTACGTGATGTATATCATATCTATGATATTGTTCGTCTTGATACAAATGAAATATCAAGTGAATCCCCAAAGCAGGAGTGAGTTCTACTATATTGATGTTATTCGGTCTCAATACTTTACAAAATCCTCATTTATGTGGGCAAATTTTATTTTGTTATTAGTGCAGACAAATGTCTCTGGAGGATCAGAGTATGTTATCAAGTTACTTGCCGTTACTAAGGGAGTTTATTCCAAGTGCCGCTGCTGAAATTGAATCAGATATAGATGCAAACATGATGAAACAAAATTGTAAGTTCCAATTCTTCTAGCAGTCACTTGAATTCTATGGCATACAACTTTAGTTATGAATGATGCAACTATGATCCTATGCAATTCAACAGTAGAAAGTTGGATGAAGAGGATAATTATTATTCATCCGTTATTTGTTTTTCCAGCTATCGTCTCCTGTTCTTGCTTTGCGCAAGTTTTTTTCCTTACCTCACTCACTTTTTAGTTTCATCTATGTATTTGGGATTTTATTTTAATTCCTGTTGTAATATTTTGATATTTCATTTATATATGAAATGGTTTTTTATAAAAAAGAAAATGTAATTTCTTATTGTTATGTCTCTGTCTTCACTTCTTCAGTGCCTGTAGATGATTATGTGTATGACTACTATACTGTGAAGAATGATGTGGAGATTGCTGAAGACGATGCCTCCCATCCATTTCCTTTGTGCGTCTTTCTTCCTTTTCCCCTTTCTGCTATGGTTTACACTTCATGTTTTTTTTAATCATTTCATATATTTTTTTTCAGGATACAAGTTGATGACTTAGATCATGATGGGCCTAGTGACTCAGATTATGAAACTGATGATTCAAATGGTAAAAACCAATGACCATTTCCTTCTAGTTTACAAACATAAGTTATATCTAATTTCTTTTATGCTTTTTGTCTTCTTTGGTTTCAGCTGAAAACAATCCGTGCTTCGATTACCCAGATGAGGAAGAGTTGGAGAGTACATCTTCAAATGATGAATTGGAAGATAGTGATGATGAGAAGCAGTCCTCAGAAAGTAATGATGTAGAAGAAGATGAGTTATCGGAGGAGGAGAAAGTTGAATTATATGAGGATGAAATATATGATGATTTTGATGAAGAGGATGGTGCTGATAGCTTTGATTATGATAGTAATGTTGGTCATGATGAAGGTGAAGATTGGAGATGGTCCTATCGTTGAATTTTTCACTAGAGATAGAACAAGCTTTTCATCCTTGTGAATATATATATCTTTTCTTAATTAGGATTTAGGGGAGGAATGCTTGCTATGATTAGGGATGTAATGTTGGAGATTTAGAGTCTTTTTTACTTGATTAGGGAAAAATGTTTAGATTTTTTAAAAAGCTGACTTTTATTTTATTTGGTTTTGATTGAACTTGTAAATTTTTAGTCGGTTTGGATGTCAAATATTTCAATTTCTTTTTTCTAAACGACTCATTTTTACCATTAAATACTTGAAATGTTGAAC ATGGCATTCTATAGTATGATTAACTTGTTTTCATATATTGAGCTTCTAATTTATTTTGGTGAGGTATCATGGTTTCTTTGTGCTACTGCTTTCTCCTTTTATCAGCTTGCGGCAAAAAACGCTAGATTTGAGCAGATATGGAGAAGTAGGAAAGGGGTTAAAGATGAAAAAGATGACCAGTTACGTGATGTATATCATATCTATGATATTGTTCGTCTTGATACAAATGAAATATCAAGTGAATCCCCAAAGCAGGAACAAATGTCTCTGGAGGATCAGAGTATGTTATCAAGTTACTTGCCGTTACTAAGGGAGTTTATTCCAAGTGCCGCTGCTGAAATTGAATCAGATATAGATGCAAACATGATGAAACAAAATTTGCCTGTAGATGATTATGTGTATGACTACTATACTGTGAAGAATGATGTGGAGATTGCTGAAGACGATGCCTCCCATCCATTTCCTTTGATACAAGTTGATGACTTAGATCATGATGGGCCTAGTGACTCAGATTATGAAACTGATGATTCAAATGCTGAAAACAATCCGTGCTTCGATTACCCAGATGAGGAAGAGTTGGAGAGTACATCTTCAAATGATGAATTGGAAGATAGTGATGATGAGAAGCAGTCCTCAGAAAGTAATGATGTAGAAGAAGATGAGTTATCGGAGGAGGAGAAAGTTGAATTATATGAGGATGAAATATATGATGATTTTGATGAAGAGGATGGTGCTGATAGCTTTGATTATGATAGTAATGTTGGTCATGATGAAGGTGAAGATTGGAGATGGTCCTATCGTTGA MAFYSMINLFSYIELLIYFGEVSWFLCATAFSFYQLAAKNARFEQIWRSRKGVKDEKDDQLRDVYHIYDIVRLDTNEISSESPKQEQMSLEDQSMLSSYLPLLREFIPSAAAEIESDIDANMMKQNLPVDDYVYDYYTVKNDVEIAEDDASHPFPLIQVDDLDHDGPSDSDYETDDSNAENNPCFDYPDEEELESTSSNDELEDSDDEKQSSESNDVEEDELSEEEKVELYEDEIYDDFDEEDGADSFDYDSNVGHDEGEDWRWSYR Homology
BLAST of Cucsat.G2634.T2 vs. ExPASy Swiss-Prot
Match: Q8GYP3 (RNA-directed DNA methylation 4 OS=Arabidopsis thaliana OX=3702 GN=RDM4 PE=1 SV=1) HSP 1 Score: 144.4 bits (363), Expect = 1.8e-33 Identity = 94/211 (44.55%), Postives = 144/211 (68.25%), Query Frame = 0
BLAST of Cucsat.G2634.T2 vs. NCBI nr
Match: XP_004139832.1 (RNA-directed DNA methylation 4 [Cucumis sativus] >KGN44279.1 hypothetical protein Csa_016181 [Cucumis sativus]) HSP 1 Score: 437 bits (1124), Expect = 1.62e-151 Identity = 231/233 (99.14%), Postives = 232/233 (99.57%), Query Frame = 0
BLAST of Cucsat.G2634.T2 vs. NCBI nr
Match: XP_008447116.1 (PREDICTED: RNA-directed DNA methylation 4-like isoform X1 [Cucumis melo] >XP_008447117.1 PREDICTED: RNA-directed DNA methylation 4-like isoform X1 [Cucumis melo] >XP_016900354.1 PREDICTED: RNA-directed DNA methylation 4-like isoform X1 [Cucumis melo]) HSP 1 Score: 419 bits (1076), Expect = 3.23e-144 Identity = 220/233 (94.42%), Postives = 226/233 (97.00%), Query Frame = 0
BLAST of Cucsat.G2634.T2 vs. NCBI nr
Match: KAA0051104.1 (RNA-directed DNA methylation 4-like isoform X1 [Cucumis melo var. makuwa] >TYK02694.1 RNA-directed DNA methylation 4-like isoform X1 [Cucumis melo var. makuwa]) HSP 1 Score: 419 bits (1077), Expect = 1.71e-143 Identity = 221/233 (94.85%), Postives = 226/233 (97.00%), Query Frame = 0
BLAST of Cucsat.G2634.T2 vs. NCBI nr
Match: XP_008447118.1 (PREDICTED: RNA-directed DNA methylation 4-like isoform X2 [Cucumis melo]) HSP 1 Score: 410 bits (1053), Expect = 9.46e-141 Identity = 218/233 (93.56%), Postives = 224/233 (96.14%), Query Frame = 0
BLAST of Cucsat.G2634.T2 vs. NCBI nr
Match: XP_038885561.1 (RNA-directed DNA methylation 4 [Benincasa hispida] >XP_038885562.1 RNA-directed DNA methylation 4 [Benincasa hispida]) HSP 1 Score: 358 bits (920), Expect = 1.84e-120 Identity = 197/239 (82.43%), Postives = 219/239 (91.63%), Query Frame = 0
BLAST of Cucsat.G2634.T2 vs. ExPASy TrEMBL
Match: A0A0A0K5Q3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G238430 PE=4 SV=1) HSP 1 Score: 437 bits (1124), Expect = 7.85e-152 Identity = 231/233 (99.14%), Postives = 232/233 (99.57%), Query Frame = 0
BLAST of Cucsat.G2634.T2 vs. ExPASy TrEMBL
Match: A0A1S4DWJ0 (RNA-directed DNA methylation 4-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC103489641 PE=4 SV=1) HSP 1 Score: 419 bits (1076), Expect = 1.56e-144 Identity = 220/233 (94.42%), Postives = 226/233 (97.00%), Query Frame = 0
BLAST of Cucsat.G2634.T2 vs. ExPASy TrEMBL
Match: A0A5D3BU38 (RNA-directed DNA methylation 4-like isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1161G00230 PE=4 SV=1) HSP 1 Score: 419 bits (1077), Expect = 8.29e-144 Identity = 221/233 (94.85%), Postives = 226/233 (97.00%), Query Frame = 0
BLAST of Cucsat.G2634.T2 vs. ExPASy TrEMBL
Match: A0A1S3BG45 (RNA-directed DNA methylation 4-like isoform X2 OS=Cucumis melo OX=3656 GN=LOC103489641 PE=4 SV=1) HSP 1 Score: 410 bits (1053), Expect = 4.58e-141 Identity = 218/233 (93.56%), Postives = 224/233 (96.14%), Query Frame = 0
BLAST of Cucsat.G2634.T2 vs. ExPASy TrEMBL
Match: A0A6J1GCH8 (RNA-directed DNA methylation 4 OS=Cucurbita moschata OX=3662 GN=LOC111452902 PE=3 SV=1) HSP 1 Score: 330 bits (846), Expect = 1.44e-109 Identity = 185/238 (77.73%), Postives = 208/238 (87.39%), Query Frame = 0
BLAST of Cucsat.G2634.T2 vs. TAIR 10
Match: AT2G30280.1 (RNA-directed DNA methylation 4 ) HSP 1 Score: 144.4 bits (363), Expect = 1.3e-34 Identity = 94/211 (44.55%), Postives = 144/211 (68.25%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Cucumber (B10) v3
Date Performed: 2021-10-25 Position : 0 Zoom : x 1
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
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