Cucsat.G16598 (gene) Cucumber (B10) v3

Overview
NameCucsat.G16598
Typegene
OrganismCucumis sativus L. var. sativus cv B10 (Cucumber (B10) v3)
DescriptionPentatricopeptide repeat-containing protein
Locationctg24: 1354641 .. 1356984 (+)
RNA-Seq ExpressionCucsat.G16598
SyntenyCucsat.G16598
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
TTAATGATTCTATCTTAACTATTATTGATTCTTATGAAAATTTGTGATTAGTAACTAAACGTATTAAGAGAAAAAGACACATTTAATATGAAATAGTATCGACCTGAGTAGAAAGTTAGAATTCATACATGTGTGAGAAAGTATCGTCGACATGAACATGATTGAAAAAAGAGTCATCTATTCAAAAAAGCTTCGAATTGGATACGAAAATTCTATTATTAAATGGCTTGCTGTTTAAGTGATAAACCAAAACTGAGATAAACCAAAGAAGCTTCGAAGGCTCTTCTATTGCTATCCCGACAAACTGAGATATACCGAAGTCGCAACGCCGAGAGCGTACACTGCAACCACAGTTCCAACCACATCCTTTCCGGACCGAGTCACGGCGCCGATTCCGGCGATTCCGGCGATTCCCACCGGAACTCGAACCATCACTTTCTTTCCCACGTTCTTCACCACAGCCTCTGCGAATAGTTCAATCGCCCAACGGTTAAACAGGATCAGTCCTAGTGCTTCGTCTTCACGATCCGAGTCATCGCGATTGACGGCTCGTAGTGCTGAGTCCACCTGGAGACGAGTCGGGGGAGAGGGAAGCCAGTTGGTGATTAGTGGATGCGGCTGGACGACGGTGAGGAGGTGGTGAAGGTGGTCGGCGGCGGTGCAGAGTTGATAGGGGAAAACGCCGTTGTATGCGTGCTGTGTTAGGGCAAGGCAGTGGGAGAAGGTTGAATTGCAGGCTGAGTCAAATTCATGCGAGTTGGTAAGTGAGTTTCTGACTCGTTTCGAAGCTGATATTCCCATTATCTTTCTCGCTCTCGCTCTCGCTCTCTCCTTCCCTCCACCAATTCTGGTTTTGAAGGACACTTTAATAAATATCTGAAGACAAAAGCCTTTTATATCAAGTGTAGTTTTCATATAGATTAGAAAAATATCTTTAAACCTTTCCAATAAGCTTCTCAAAAATTTTAAGAATACCCATACCATTAGATTTCTGCTACATCCCATCTTCACTGAACTGAGTTTCTCGCAAAAGGGCGGTTGGAGATGAAATCTACTCTAGTGGGTCCTCTTCAACTCCATTTTCTTCAATTGGGTCTTCGCCAAAACCTCACGAACCGAAGCCTCCGTTGTGGTACGGCAGCTCCACCTCCAAATATCATTTGTGGCCTCAGAAAGGGCTCGAACAGGCCCTTAGGGTTGTCAAGGGTGCCCTCCAATGAGGCAATTCAAGCAGTTCAATCTCTCAAGCTTGCTAAATCCACCTCCAAAATGGAAGACGTTATCAATACCAAGCTCGGCAGATTGCTTAAAGCAGACTTGTTTGATGCTCTGTCTGAATTACAAAGGCAAAATGAACTGGAATTATCGCTTCAGGTATTGCTTACTCCTGTTTAACGTCTGGGAATATTGCAAAAGCTAGATATTATATTTTTATGCCTTGAACTCTCTTATGGCTGGCTTAGTTATAATAATTGCATAAATTGAAAGTTCAACTCAATACCAATGGTCCTTAGAGTTCAGGTTTTATAAGGTTCAATTACAACAATGAGTAAAAGGTTGATGGTGCTGTATTTTTGCATTTTCTTTCGCTGTCATTTATTTTTGCATAGTTTAAATTTTCTTTTTGCATTGCTATTGAGTTAAAATTTCAAGTTTCATTTTATGCAATTATTATAACAATGAGTGCTTGATGGTGTTATTGTAGCTGTACTTTTGCATTTTATTTCGTTATCAAAAGGAAACACATTTTGTATACCATACGAATCGGTTCCTTTGTACTCTTGGATTTCTTCAGATACTTTAATTATCAATGAAATTGAAATTGTCTTGTATACATAAAAAAAAAATCATTTATTTTGTTTTGGCTTTTTCCTTTACAAGAAATACAATCATTTGAAATTCTGATCATAAAAGTTCACTGGAATGATACATCTGGATTCTCTTCTGCAGCCTTTAGCATTCCTTCCATTTCAAATTTTATTTCATCTTAACTGAATTCAGGCTTTAGGTCTTCAAATTTATGCAAAATGAAGAATGGTTCGAGCCAGATTTAAGGTTATACCATGGAATGATTATGCTGATGGGAAAGAACAAAATGATTGAAATGGCTGAAGAGGTTTTTCATAAGTTAAGAAAGGATGGGTTAGAACCAGATACAAGAGCTTTCAATGAAATGATGGGAGCATATCTGCAAGTGGACATGATCGAAAGAGCTGTTGAGACATACAGATTGATGATAGCTTCAGGTTGTACTCCAGATGAACTGACTTTCAAGATCTTGATAAAGAATCTTGAGAAATTTAGGGAAGAATTTGCTGTAGTGGTGAAGAAAGACTGTAATGAGTACTTGGATAATCCTCAGAAGTTTTTCAACGATAACGGGCAGAAACTGACAACGAAAGTTCGAATTCTTTAAACATGCAGTTGGGTTACTTCTGGGAATGTATTTGATTTTTTATCTGATCAATGTCTTTGGGATTCTCATAATCCTTGAATACTTTGTAACAGCTAGTAATGAATGAAGGTAAACTCTAGTCCTAGAGGTTCTCTCATTAACTAATAACTATGATGCGAGTGGCTAATGCTATAGTTTTCTTCTGTTTCAACCGGAATTAAACAAGGATAGATTGATACAATAGAAACTT

Coding sequence (CDS)

ATGCAAAATGAAGAATGGTTCGAGCCAGATTTAAGGTTATACCATGGAATGATTATGCTGATGGGAAAGAACAAAATGATTGAAATGGCTGAAGAGGTTTTTCATAAGTTAAGAAAGGATGGGTTAGAACCAGATACAAGAGCTTTCAATGAAATGATGGGAGCATATCTGCAAGTGGACATGATCGAAAGAGCTGTTGAGACATACAGATTGATGATAGCTTCAGGTTGTACTCCAGATGAACTGACTTTCAAGATCTTGATAAAGAATCTTGAGAAATTTAGGGAAGAATTTGCTGTAGTGGTGAAGAAAGACTGTAATGAGTACTTGGATAATCCTCAGAAGTTTTTCAACGATAACGGGCAGAAACTGACAACGAAAGTTCGAATTCTTTAA

Protein sequence

MQNEEWFEPDLRLYHGMIMLMGKNKMIEMAEEVFHKLRKDGLEPDTRAFNEMMGAYLQVDMIERAVETYRLMIASGCTPDELTFKILIKNLEKFREEFAVVVKKDCNEYLDNPQKFFNDNGQKLTTKVRIL
Homology
The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Q9STF94.1e-1930.51Protein THYLAKOID ASSEMBLY 8-like, chloroplastic OS=Arabidopsis thaliana OX=3702... [more]
Q1PFH73.2e-1627.75Pentatricopeptide repeat-containing protein At1g62350 OS=Arabidopsis thaliana OX... [more]
A7LN872.2e-0925.56Pentatricopeptide repeat-containing protein PPR5, chloroplastic OS=Zea mays OX=4... [more]
Q9LVW62.9e-0930.56Protein THYLAKOID ASSEMBLY 8, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=T... [more]
Q9FKC31.9e-0826.45Pentatricopeptide repeat-containing protein At5g48730, chloroplastic OS=Arabidop... [more]
Match NameE-valueIdentityDescription
XP_004152311.21.61e-178100.00pentatricopeptide repeat-containing protein At1g62350 [Cucumis sativus][more]
KGN53003.11.34e-173100.00hypothetical protein Csa_015115 [Cucumis sativus][more]
KAA0044536.18.19e-15691.29pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa][more]
XP_008454079.16.72e-15590.87PREDICTED: pentatricopeptide repeat-containing protein At1g62350-like [Cucumis m... [more]
XP_038878176.14.04e-14384.08pentatricopeptide repeat-containing protein At1g62350-like [Benincasa hispida] >... [more]
Match NameE-valueIdentityDescription
A0A0A0KU236.47e-174100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G011020 PE=4 SV=1[more]
A0A5A7TQZ83.96e-15691.29Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=11946... [more]
A0A5D3CZ953.25e-15590.87Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=11946... [more]
A0A1S3BX973.25e-15590.87pentatricopeptide repeat-containing protein At1g62350-like OS=Cucumis melo OX=36... [more]
A0A6J1IY983.17e-13580.00pentatricopeptide repeat-containing protein At1g62350-like OS=Cucurbita maxima O... [more]
InterPro
Analysis Name: InterPro Annotations of Cucumber (B10) v3
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002885Pentatricopeptide repeatPFAMPF13041PPR_2coord: 44..91
e-value: 6.5E-10
score: 39.1
IPR002885Pentatricopeptide repeatPFAMPF01535PPRcoord: 14..42
e-value: 6.0E-4
score: 19.9
IPR002885Pentatricopeptide repeatTIGRFAMTIGR00756TIGR00756coord: 48..81
e-value: 7.1E-7
score: 27.0
coord: 13..46
e-value: 1.2E-6
score: 26.4
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 45..79
score: 10.446177
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 10..44
score: 10.007725
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10Tetratricopeptide repeat domaincoord: 1..125
e-value: 4.0E-27
score: 96.7
NoneNo IPR availablePANTHERPTHR47594:SF5PPR CONTAINING PLANT-LIKE PROTEINcoord: 2..121
IPR044190Protein THYLAKOID ASSEMBLY 8-likePANTHERPTHR47594PPR CONTAINING PLANT-LIKE PROTEINcoord: 2..121

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cucsat.G16598.T1Cucsat.G16598.T1mRNA
Cucsat.G16598.T3Cucsat.G16598.T3mRNA
Cucsat.G16598.T2Cucsat.G16598.T2mRNA
Cucsat.G16598.T4Cucsat.G16598.T4mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0009658 chloroplast organization
biological_process GO:0000373 Group II intron splicing
molecular_function GO:0005515 protein binding
molecular_function GO:0003723 RNA binding