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Cucsat.G16598.T4 (mRNA) Cucumber (B10) v3
Overview
Sequences
The following sequences are available for this feature:
Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.AACTGAGATAAACCAAAGAAGCTTCGAAGGCTCTTCTATTGCTATCCCGACAAACTGAGATATACCGAAGTCGCAACGCCGAGAGCGTACACTGCAACCACAGTTCCAACCACATCCTTTCCGGACCGAGTCACGGCGCCGATTCCGGCGATTCCGGCGATTCCCACCGGAACTCGAACCATCACTTTCTTTCCCACGTTCTTCACCACAGCCTCTGCGAATAGTTCAATCGCCCAACGGTTAAACAGGATCAGTCCTAGTGCTTCGTCTTCACGATCCGAGTCATCGCGATTGACGGCTCGTAGTGCTGAGTCCACCTGGAGACGAGTCGGGGGAGAGGGAAGCCAGTTGGTGATTAGTGGATGCGGCTGGACGACGGTGAGGAGGTGGTGAAGGTGGTCGGCGGCGGTGCAGAGTTGATAGGGGAAAACGCCGTTGTATGCGTGCTGTGTTAGGGCAAGGCAGTGGGAGAAGGTTGAATTGCAGGCTGAGTCAAATTCATGCGAGTTGGTAAGTGAGTTTCTGACTCGTTTCGAAGCTGATATTCCCATTATCTTTCTCGCTCTCGCTCTCGCTCTCTCCTTCCCTCCACCAATTCTGGTTTTGAAGGACACTTTAATAAATATCTGAAGACAAAAGCCTTTTATATCAAGTGTAGTTTTCATATAGATTAGAAAAATATCTTTAAACCTTTCCAATAAGCTTCTCAAAAATTTTAAGAATACCCATACCATTAGATTTCTGCTACATCCCATCTTCACTGAACTGAGTTTCTCGCAAAAGGGCGGTTGGAGATGAAATCTACTCTAGTGGGTCCTCTTCAACTCCATTTTCTTCAATTGGGTCTTCGCCAAAACCTCACGAACCGAAGCCTCCGTTGTGGTACGGCAGCTCCACCTCCAAATATCATTTGTGGCCTCAGAAAGGGCTCGAACAGGCCCTTAGGGTTGTCAAGGGTGCCCTCCAATGAGGCAATTCAAGCAGTTCAATCTCTCAAGCTTGCTAAATCCACCTCCAAAATGGAAGACGTTATCAATACCAAGCTCGGCAGATTGCTTAAAGCAGACTTGTTTGATGCTCTGTCTGAATTACAAAGGCAAAATGAACTGGAATTATCGCTTCAGGTATTGCTTACTCCTGTTTAACGTCTGGGAATATTGCAAAAGCTAGATATTATATTTTTATGCCTTGAACTCTCTTATGGCTGGCTTAGTTATAATAATTGCATAAATTGAAAGTTCAACTCAATACCAATGGTCCTTAGAGTTCAGGTTTTATAAGGTTCAATTACAACAATGAGTAAAAGGTTGATGGTGCTGTATTTTTGCATTTTCTTTCGCTGTCATTTATTTTTGCATAGTTTAAATTTTCTTTTTGCATTGCTATTGAGTTAAAATTTCAAGTTTCATTTTATGCAATTATTATAACAATGAGTGCTTGATGGTGTTATTGTAGCTGTACTTTTGCATTTTATTTCGTTATCAAAAGGAAACACATTTTGTATACCATACGAATCGGTTCCTTTGTACTCTTGGATTTCTTCAGATACTTTAATTATCAATGAAATTGAAATTGTCTTGTATACATAAAAAAAAAATCATTTATTTTGTTTTGGCTTTTTCCTTTACAAGAAATACAATCATTTGAAATTCTGATCATAAAAGTTCACTGGAATGATACATCTGGATTCTCTTCTGCAGCCTTTAGCATTCCTTCCATTTCAAATTTTATTTCATCTTAACTGAATTCAGGCTTTAGGTCTTCAAATTTATGCAAAATGAAGAATGGTTCGAGCCAGATTTAAGGTTATACCATGGAATGATTATGCTGATGGGAAAGAACAAAATGATTGAAATGGCTGAAGAGGTTTTTCATAAGTTAAGAAAGGATGGGTTAGAACCAGATACAAGAGCTTTCAATGAAATGATGGGAGCATATCTGCAAGTGGACATGATCGAAAGAGCTGTTGAGACATACAGATTGATGATAGCTTCAGGTTGTACTCCAGATGAACTGACTTTCAAGATCTTGATAAAGAATCTTGAGAAATTTAGGGAAGAATTTGCTGTAGTGGTGAAGAAAGACTGTAATGAGTACTTGGATAATCCTCAGAAGTTTTTCAACGATAACGGGCAGAAACTGACAACGAAAGTTCGAATTCTTTAAACATGCAGTTGGGTTACTTCTGGGAATGTATTTGATTTTTTATCTGATCAATGTCTTTGGGATTCTCATAATCCTTGAATACTTTGTAACAGCTAGTAATGAATGAAGGTAAACTCTAGTCCTAGAGGTTCTCTCATTAACTAATAACTATGATGCGAGTGGCTAATGCTATAGTTTT ATGCGAGTTGGGCGGTTGGAGATGAAATCTACTCTAGTGGGTCCTCTTCAACTCCATTTTCTTCAATTGGGTCTTCGCCAAAACCTCACGAACCGAAGCCTCCGTTGTGGTACGGCAGCTCCACCTCCAAATATCATTTGTGGCCTCAGAAAGGGCTCGAACAGGCCCTTAGGGTTGTCAAGGGTGCCCTCCAATGAGGCAATTCAAGCAGTTCAATCTCTCAAGCTTGCTAAATCCACCTCCAAAATGGAAGACGTTATCAATACCAAGCTCGGCAGATTGCTTAAAGCAGACTTGTTTGATGCTCTGTCTGAATTACAAAGGCAAAATGAACTGGAATTATCGCTTCAGGTCTTCAAATTTATGCAAAATGAAGAATGGTTCGAGCCAGATTTAAGGTTATACCATGGAATGATTATGCTGATGGGAAAGAACAAAATGATTGAAATGGCTGAAGAGGTTTTTCATAAGTTAAGAAAGGATGGGTTAGAACCAGATACAAGAGCTTTCAATGAAATGATGGGAGCATATCTGCAAGTGGACATGATCGAAAGAGCTGTTGAGACATACAGATTGATGATAGCTTCAGGTTGTACTCCAGATGAACTGACTTTCAAGATCTTGATAAAGAATCTTGAGAAATTTAGGGAAGAATTTGCTGTAGTGGTGAAGAAAGACTGTAATGAGTACTTGGATAATCCTCAGAAGTTTTTCAACGATAACGGGCAGAAACTGACAACGAAAGTTCGAATTCTTTAA MRVGRLEMKSTLVGPLQLHFLQLGLRQNLTNRSLRCGTAAPPPNIICGLRKGSNRPLGLSRVPSNEAIQAVQSLKLAKSTSKMEDVINTKLGRLLKADLFDALSELQRQNELELSLQVFKFMQNEEWFEPDLRLYHGMIMLMGKNKMIEMAEEVFHKLRKDGLEPDTRAFNEMMGAYLQVDMIERAVETYRLMIASGCTPDELTFKILIKNLEKFREEFAVVVKKDCNEYLDNPQKFFNDNGQKLTTKVRIL Homology
BLAST of Cucsat.G16598.T4 vs. ExPASy Swiss-Prot
Match: Q9STF9 (Protein THYLAKOID ASSEMBLY 8-like, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=THA8L PE=1 SV=1) HSP 1 Score: 96.7 bits (239), Expect = 4.1e-19 Identity = 54/177 (30.51%), Postives = 101/177 (57.06%), Query Frame = 0
BLAST of Cucsat.G16598.T4 vs. ExPASy Swiss-Prot
Match: Q1PFH7 (Pentatricopeptide repeat-containing protein At1g62350 OS=Arabidopsis thaliana OX=3702 GN=At1g62350 PE=2 SV=1) HSP 1 Score: 87.0 bits (214), Expect = 3.2e-16 Identity = 53/191 (27.75%), Postives = 103/191 (53.93%), Query Frame = 0
BLAST of Cucsat.G16598.T4 vs. ExPASy Swiss-Prot
Match: A7LN87 (Pentatricopeptide repeat-containing protein PPR5, chloroplastic OS=Zea mays OX=4577 GN=PPR5 PE=2 SV=1) HSP 1 Score: 64.3 bits (155), Expect = 2.2e-09 Identity = 46/180 (25.56%), Postives = 92/180 (51.11%), Query Frame = 0
BLAST of Cucsat.G16598.T4 vs. ExPASy Swiss-Prot
Match: Q9LVW6 (Protein THYLAKOID ASSEMBLY 8, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=THA8 PE=2 SV=1) HSP 1 Score: 63.9 bits (154), Expect = 2.9e-09 Identity = 55/180 (30.56%), Postives = 87/180 (48.33%), Query Frame = 0
BLAST of Cucsat.G16598.T4 vs. ExPASy Swiss-Prot
Match: Q9FKC3 (Pentatricopeptide repeat-containing protein At5g48730, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=At5g48730 PE=2 SV=2) HSP 1 Score: 61.2 bits (147), Expect = 1.9e-08 Identity = 41/155 (26.45%), Postives = 80/155 (51.61%), Query Frame = 0
BLAST of Cucsat.G16598.T4 vs. NCBI nr
Match: XP_004152311.2 (pentatricopeptide repeat-containing protein At1g62350 [Cucumis sativus]) HSP 1 Score: 500 bits (1288), Expect = 1.61e-178 Identity = 252/252 (100.00%), Postives = 252/252 (100.00%), Query Frame = 0
BLAST of Cucsat.G16598.T4 vs. NCBI nr
Match: KGN53003.1 (hypothetical protein Csa_015115 [Cucumis sativus]) HSP 1 Score: 488 bits (1255), Expect = 1.34e-173 Identity = 245/245 (100.00%), Postives = 245/245 (100.00%), Query Frame = 0
BLAST of Cucsat.G16598.T4 vs. NCBI nr
Match: KAA0044536.1 (pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa]) HSP 1 Score: 442 bits (1138), Expect = 8.19e-156 Identity = 220/241 (91.29%), Postives = 230/241 (95.44%), Query Frame = 0
BLAST of Cucsat.G16598.T4 vs. NCBI nr
Match: XP_008454079.1 (PREDICTED: pentatricopeptide repeat-containing protein At1g62350-like [Cucumis melo] >TYK17047.1 pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa]) HSP 1 Score: 440 bits (1132), Expect = 6.72e-155 Identity = 219/241 (90.87%), Postives = 229/241 (95.02%), Query Frame = 0
BLAST of Cucsat.G16598.T4 vs. NCBI nr
Match: XP_038878176.1 (pentatricopeptide repeat-containing protein At1g62350-like [Benincasa hispida] >XP_038878177.1 pentatricopeptide repeat-containing protein At1g62350-like [Benincasa hispida]) HSP 1 Score: 410 bits (1055), Expect = 4.04e-143 Identity = 206/245 (84.08%), Postives = 222/245 (90.61%), Query Frame = 0
BLAST of Cucsat.G16598.T4 vs. ExPASy TrEMBL
Match: A0A0A0KU23 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G011020 PE=4 SV=1) HSP 1 Score: 488 bits (1255), Expect = 6.47e-174 Identity = 245/245 (100.00%), Postives = 245/245 (100.00%), Query Frame = 0
BLAST of Cucsat.G16598.T4 vs. ExPASy TrEMBL
Match: A0A5A7TQZ8 (Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold46G002830 PE=4 SV=1) HSP 1 Score: 442 bits (1138), Expect = 3.96e-156 Identity = 220/241 (91.29%), Postives = 230/241 (95.44%), Query Frame = 0
BLAST of Cucsat.G16598.T4 vs. ExPASy TrEMBL
Match: A0A5D3CZ95 (Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold130G001960 PE=4 SV=1) HSP 1 Score: 440 bits (1132), Expect = 3.25e-155 Identity = 219/241 (90.87%), Postives = 229/241 (95.02%), Query Frame = 0
BLAST of Cucsat.G16598.T4 vs. ExPASy TrEMBL
Match: A0A1S3BX97 (pentatricopeptide repeat-containing protein At1g62350-like OS=Cucumis melo OX=3656 GN=LOC103494600 PE=4 SV=1) HSP 1 Score: 440 bits (1132), Expect = 3.25e-155 Identity = 219/241 (90.87%), Postives = 229/241 (95.02%), Query Frame = 0
BLAST of Cucsat.G16598.T4 vs. ExPASy TrEMBL
Match: A0A6J1IY98 (pentatricopeptide repeat-containing protein At1g62350-like OS=Cucurbita maxima OX=3661 GN=LOC111479570 PE=4 SV=1) HSP 1 Score: 390 bits (1001), Expect = 3.17e-135 Identity = 196/245 (80.00%), Postives = 216/245 (88.16%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Cucumber (B10) v3
Date Performed: 2021-10-25 Position : 0 Zoom : x 1
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
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