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Cucsat.G16598.T1 (mRNA) Cucumber (B10) v3
Overview
Sequences
The following sequences are available for this feature:
Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.TTAATGATTCTATCTTAACTATTATTGATTCTTATGAAAATTTGTGATTAGTAACTAAACGTATTAAGAGAAAAAGACACATTTAATATGAAATAGTATCGACCTGAGTAGAAAGTTAGAATTCATACATGTGTGAGAAAGTATCGTCGACATGAACATGATTGAAAAAAGAGTCATCTATTCAAAAAAGCTTCGAATTGGATACGAAAATTCTATTATTAAATGGCTTGCTGTTTAAGTGATAAACCAAAACTGAGATAAACCAAAGAAGCTTCGAAGGCTCTTCTATTGCTATCCCGACAAACTGAGATATACCGAAGTCGCAACGCCGAGAGCGTACACTGCAACCACAGTTCCAACCACATCCTTTCCGGACCGAGTCACGGCGCCGATTCCGGCGATTCCGGCGATTCCCACCGGAACTCGAACCATCACTTTCTTTCCCACGTTCTTCACCACAGCCTCTGCGAATAGTTCAATCGCCCAACGGTTAAACAGGATCAGTCCTAGTGCTTCGTCTTCACGATCCGAGTCATCGCGATTGACGGCTCGTAGTGCTGAGTCCACCTGGAGACGAGTCGGGGGAGAGGGAAGCCAGTTGGTGATTAGTGGATGCGGCTGGACGACGGTGAGGAGGTGGTGAAGGTGGTCGGCGGCGGTGCAGAGTTGATAGGGGAAAACGCCGTTGTATGCGTGCTGTGTTAGGGCAAGGCAGTGGGAGAAGGTTGAATTGCAGGCTGAGTCAAATTCATGCGAGTTGGTAAGTGAGTTTCTGACTCGTTTCGAAGCTGATATTCCCATTATCTTTCTCGCTCTCGCTCTCGCTCTCTCCTTCCCTCCACCAATTCTGGTTTTGAAGGACACTTTAATAAATATCTGAAGACAAAAGCCTTTTATATCAAGTGTAGTTTTCATATAGATTAGAAAAATATCTTTAAACCTTTCCAATAAGCTTCTCAAAAATTTTAAGAATACCCATACCATTAGATTTCTGCTACATCCCATCTTCACTGAACTGAGTTTCTCGCAAAAGGGCGGTTGGAGATGAAATCTACTCTAGTGGGTCCTCTTCAACTCCATTTTCTTCAATTGGGTCTTCGCCAAAACCTCACGAACCGAAGCCTCCGTTGTGGTACGGCAGCTCCACCTCCAAATATCATTTGTGGCCTCAGAAAGGGCTCGAACAGGCCCTTAGGGTTGTCAAGGGTGCCCTCCAATGAGGCAATTCAAGCAGTTCAATCTCTCAAGCTTGCTAAATCCACCTCCAAAATGGAAGACGTTATCAATACCAAGCTCGGCAGATTGCTTAAAGCAGACTTGTTTGATGCTCTGTCTGAATTACAAAGGCAAAATGAACTGGAATTATCGCTTCAGGTATTGCTTACTCCTGTTTAACGTCTGGGAATATTGCAAAAGCTAGATATTATATTTTTATGCCTTGAACTCTCTTATGGCTGGCTTAGTTATAATAATTGCATAAATTGAAAGTTCAACTCAATACCAATGGTCCTTAGAGTTCAGGTTTTATAAGGTTCAATTACAACAATGAGTAAAAGGTTGATGGTGCTGTATTTTTGCATTTTCTTTCGCTGTCATTTATTTTTGCATAGTTTAAATTTTCTTTTTGCATTGCTATTGAGTTAAAATTTCAAGTTTCATTTTATGCAATTATTATAACAATGAGTGCTTGATGGTGTTATTGTAGCTGTACTTTTGCATTTTATTTCGTTATCAAAAGGAAACACATTTTGTATACCATACGAATCGGTTCCTTTGTACTCTTGGATTTCTTCAGATACTTTAATTATCAATGAAATTGAAATTGTCTTGTATACATAAAAAAAAAATCATTTATTTTGTTTTGGCTTTTTCCTTTACAAGAAATACAATCATTTGAAATTCTGATCATAAAAGTTCACTGGAATGATACATCTGGATTCTCTTCTGCAGCCTTTAGCATTCCTTCCATTTCAAATTTTATTTCATCTTAACTGAATTCAGGCTTTAGGTCTTCAAATTTATGCAAAATGAAGAATGGTTCGAGCCAGATTTAAGGTTATACCATGGAATGATTATGCTGATGGGAAAGAACAAAATGATTGAAATGGCTGAAGAGGTTTTTCATAAGTTAAGAAAGGATGGGTTAGAACCAGATACAAGAGCTTTCAATGAAATGATGGGAGCATATCTGCAAGTGGACATGATCGAAAGAGCTGTTGAGACATACAGATTGATGATAGCTTCAGGTTGTACTCCAGATGAACTGACTTTCAAGATCTTGATAAAGAATCTTGAGAAATTTAGGGAAGAATTTGCTGTAGTGGTGAAGAAAGACTGTAATGAGTACTTGGATAATCCTCAGAAGTTTTTCAACGATAACGGGCAGAAACTGACAACGAAAGTTCGAATTCTTTAAACATGCAGTTGGGTTACTTCTGGGAATGTATTTGATTTTTTATCTGATCAATGTCTTTGGGATTCTCATAATCCTTGAATACTTTGTAACAGCTAGTAATGAATGAAGGTAAACTCTAGTCCTAGAGGTTCTCTCATTAACTAATAACTATGATGCGAGTGGCTAATGCTATAGTTTTCTTCTGTTTCAACCGGAATTAAACAAGGATAGATTGATACAATAGAAACTT ATGCAAAATGAAGAATGGTTCGAGCCAGATTTAAGGTTATACCATGGAATGATTATGCTGATGGGAAAGAACAAAATGATTGAAATGGCTGAAGAGGTTTTTCATAAGTTAAGAAAGGATGGGTTAGAACCAGATACAAGAGCTTTCAATGAAATGATGGGAGCATATCTGCAAGTGGACATGATCGAAAGAGCTGTTGAGACATACAGATTGATGATAGCTTCAGGTTGTACTCCAGATGAACTGACTTTCAAGATCTTGATAAAGAATCTTGAGAAATTTAGGGAAGAATTTGCTGTAGTGGTGAAGAAAGACTGTAATGAGTACTTGGATAATCCTCAGAAGTTTTTCAACGATAACGGGCAGAAACTGACAACGAAAGTTCGAATTCTTTAA MQNEEWFEPDLRLYHGMIMLMGKNKMIEMAEEVFHKLRKDGLEPDTRAFNEMMGAYLQVDMIERAVETYRLMIASGCTPDELTFKILIKNLEKFREEFAVVVKKDCNEYLDNPQKFFNDNGQKLTTKVRIL Homology
BLAST of Cucsat.G16598.T1 vs. ExPASy Swiss-Prot
Match: Q9STF9 (Protein THYLAKOID ASSEMBLY 8-like, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=THA8L PE=1 SV=1) HSP 1 Score: 66.2 bits (160), Expect = 3.1e-10 Identity = 28/91 (30.77%), Postives = 58/91 (63.74%), Query Frame = 0
BLAST of Cucsat.G16598.T1 vs. ExPASy Swiss-Prot
Match: O82178 (Pentatricopeptide repeat-containing protein At2g35130 OS=Arabidopsis thaliana OX=3702 GN=At2g35130 PE=3 SV=1) HSP 1 Score: 60.1 bits (144), Expect = 2.2e-08 Identity = 26/81 (32.10%), Postives = 46/81 (56.79%), Query Frame = 0
BLAST of Cucsat.G16598.T1 vs. ExPASy Swiss-Prot
Match: Q9ZU27 (Pentatricopeptide repeat-containing protein At1g51965, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At1g51965 PE=2 SV=1) HSP 1 Score: 58.5 bits (140), Expect = 6.4e-08 Identity = 26/86 (30.23%), Postives = 50/86 (58.14%), Query Frame = 0
BLAST of Cucsat.G16598.T1 vs. ExPASy Swiss-Prot
Match: Q1PFH7 (Pentatricopeptide repeat-containing protein At1g62350 OS=Arabidopsis thaliana OX=3702 GN=At1g62350 PE=2 SV=1) HSP 1 Score: 56.2 bits (134), Expect = 3.2e-07 Identity = 33/132 (25.00%), Postives = 65/132 (49.24%), Query Frame = 0
BLAST of Cucsat.G16598.T1 vs. ExPASy Swiss-Prot
Match: A0A1D6IEG9 (Pentatricopeptide repeat-containing protein CRP1, chloroplastic OS=Zea mays OX=4577 GN=CRP1 PE=1 SV=1) HSP 1 Score: 55.8 bits (133), Expect = 4.1e-07 Identity = 28/83 (33.73%), Postives = 45/83 (54.22%), Query Frame = 0
BLAST of Cucsat.G16598.T1 vs. NCBI nr
Match: KGN53003.1 (hypothetical protein Csa_015115 [Cucumis sativus]) HSP 1 Score: 271 bits (693), Expect = 4.06e-90 Identity = 131/131 (100.00%), Postives = 131/131 (100.00%), Query Frame = 0
BLAST of Cucsat.G16598.T1 vs. NCBI nr
Match: XP_004152311.2 (pentatricopeptide repeat-containing protein At1g62350 [Cucumis sativus]) HSP 1 Score: 271 bits (693), Expect = 5.13e-90 Identity = 131/131 (100.00%), Postives = 131/131 (100.00%), Query Frame = 0
BLAST of Cucsat.G16598.T1 vs. NCBI nr
Match: KAA0044536.1 (pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa]) HSP 1 Score: 252 bits (644), Expect = 1.05e-82 Identity = 118/127 (92.91%), Postives = 125/127 (98.43%), Query Frame = 0
BLAST of Cucsat.G16598.T1 vs. NCBI nr
Match: XP_008454079.1 (PREDICTED: pentatricopeptide repeat-containing protein At1g62350-like [Cucumis melo] >TYK17047.1 pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa]) HSP 1 Score: 251 bits (641), Expect = 3.00e-82 Identity = 118/127 (92.91%), Postives = 124/127 (97.64%), Query Frame = 0
BLAST of Cucsat.G16598.T1 vs. NCBI nr
Match: XP_038878176.1 (pentatricopeptide repeat-containing protein At1g62350-like [Benincasa hispida] >XP_038878177.1 pentatricopeptide repeat-containing protein At1g62350-like [Benincasa hispida]) HSP 1 Score: 229 bits (584), Expect = 1.53e-73 Identity = 108/130 (83.08%), Postives = 118/130 (90.77%), Query Frame = 0
BLAST of Cucsat.G16598.T1 vs. ExPASy TrEMBL
Match: A0A0A0KU23 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G011020 PE=4 SV=1) HSP 1 Score: 271 bits (693), Expect = 1.97e-90 Identity = 131/131 (100.00%), Postives = 131/131 (100.00%), Query Frame = 0
BLAST of Cucsat.G16598.T1 vs. ExPASy TrEMBL
Match: A0A5A7TQZ8 (Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold46G002830 PE=4 SV=1) HSP 1 Score: 252 bits (644), Expect = 5.08e-83 Identity = 118/127 (92.91%), Postives = 125/127 (98.43%), Query Frame = 0
BLAST of Cucsat.G16598.T1 vs. ExPASy TrEMBL
Match: A0A5D3CZ95 (Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold130G001960 PE=4 SV=1) HSP 1 Score: 251 bits (641), Expect = 1.45e-82 Identity = 118/127 (92.91%), Postives = 124/127 (97.64%), Query Frame = 0
BLAST of Cucsat.G16598.T1 vs. ExPASy TrEMBL
Match: A0A1S3BX97 (pentatricopeptide repeat-containing protein At1g62350-like OS=Cucumis melo OX=3656 GN=LOC103494600 PE=4 SV=1) HSP 1 Score: 251 bits (641), Expect = 1.45e-82 Identity = 118/127 (92.91%), Postives = 124/127 (97.64%), Query Frame = 0
BLAST of Cucsat.G16598.T1 vs. ExPASy TrEMBL
Match: A0A6J1IY98 (pentatricopeptide repeat-containing protein At1g62350-like OS=Cucurbita maxima OX=3661 GN=LOC111479570 PE=4 SV=1) HSP 1 Score: 213 bits (542), Expect = 1.72e-67 Identity = 102/131 (77.86%), Postives = 116/131 (88.55%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Cucumber (B10) v3
Date Performed: 2021-10-25 Position : 0 Zoom : x 1
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
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