Cucsat.G10122 (gene) Cucumber (B10) v3

Overview


Name	Cucsat.G10122
Type	gene
Organism	Cucumis sativus L. var. sativus cv B10 (Cucumber (B10) v3)
Description	Nuclear pore membrane glycoprotein 210-like
Location	ctg1673: 5785148 .. 5788137 (+)
RNA-Seq Expression	Cucsat.G10122
Synteny	Cucsat.G10122

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

AATGCAGCACAATATTTCGTAATTTCGATATAAATTCAGGTTCAGGTACTCAAGAATTGTCCAGTATGTCGTTTTCTTTTTTTCCTTGAAGACAGTTTCATTTTGTGATAATATACACTCCCATCAAATAATTAATTAAATAAATAAAATATATCGTTTACGGTTGATTTCAATGATAAAATAAACCAAAACATTTACTGATATAACAAAATGTTGATATCAAATGATAGAGAATCATCATAAATTGATTTCTAAGTTAAATAACATTTTAATATATTTAAATTATTTCCAACCATAATTCCGTCAAATATTAAGTATATTAGTATTAGCTTAAATTGAATTCTTTTCTAAAGGTAGAAATTACTTAATTAAAACTAAATTGTTGGGAGTATTTGCAACATGAGAATAACAAGACAAAAACTTTACTATCGTCTTCAATCTCAATTTCACCTAATAAAAGTTGATTAGTTTGTGTAAATTAAATCTTTGTTCTGTTTTTTTTTTTTTTTTTTTTAATTATTATTATTAATGGATATGGATAAAAAGGGATGAAATTTTAAAATTTTGCTTTATTGTTAGTATTTGAAAATATTTTTATTTTTTATTTTTGTTTGAAATGAAAAATAAATAAATAAATTTTTCTGGCTTTCCTTCTTCCTCTGGACCTCTCTGCACGAAGTTAAAATGGAACACCAAAAGAAATTACACAAAAATCTTTCGACATTTCTACTTTTCCTTCCATCTCTTTCCACTGCACAAAAAAACCCCATCTGCAAATCAAAACCACAATTTTGAAGGAATTTGGATTATGGCAATGGCTTCATTCAATCTACCTCTTGCTCCTCGTCACAAGGTAAAACAACCCCTTCAATTCCTTTGATTTTTCCTTCTTTTTCTCTTCTCCAACCCATTCTACTGTTTTCAATCCATTCATCGGATTTAGTTGATACTTGTAATGAATCTCCGTTTTGTTTCTCCTTTGCAGACGCAGGGGCGTTTCCAAATTTCTTGTAGAAGAAAAGAAAAGGAACGCAATAATTTTGACCCTTACAAAGTTATTGAAATCACCCCTCCGCCCAAGAACCTCGGCATTCGTTGCTTCCCTCCCGTGAGTTTTCCATTTTGACTCTCTATCTCCTAACTGCGTATTGGCTTTCTTGTACGCTTATATGTTTTATTGATGTGGAGTAGCGAGCTTTAAGATTATTTGGTTAAGTTCACGTTTGGCTATGTAATTTACTGTTATGCTAATTTGTATAGGGAGTAGCTCGTTTTCGTTTGTTTTTGAGACAGTGGGAGAAGAAATGGGTTACTGGGAGTTGATTAAATACGATTTGTTAGTCTCTCTACATGAAAAATCATCACCACTTCGATGGTTCTGACTAATCCATGGCCCTCTCCAGGACTTTGCAAGTCTCTGATGAAAAATGCAGTTTCCATTGTATACACTGAACGGCAAATATTTTTAAGAAAAGTGAAAAATATATTGAAGAGATAAGAAAACAAAGAAGCAGATGGATGAAAATAGAGTTTCGATTGTAGATACATAGAAAGCCAACGAAATGGTTATCAAAGAGGGATTTAATAGTGTGCTTCATGAGTTTCATACTAAAACTTTTGCTTTGTGTTTCAGTTTATAAAAGATTTAGTTTTAACATAATACCACTGTGCTGAGAATAGAAGTGGAGTTAATTGATAGATTTCAGCCCATGTGACTTGGGCATGAAATTGTTATACACATGAAATATTTCCACCTTTTTAGATTGCATGTATCATTGTTGCGCTACTGAGTTCATTCAGCTTTCCTTGCTTCCCTCATCTAAACCACTCATCATTTGAGATGCTTTCTTCGTGGTCTTTCTCTGAACTGAAAACATAAGATCCTCTAATATTTTCCTTCCCCAGAAATACCACTCATCATATCGATACTCGATCATCGCTTTCGTAACTATGGTTATTTTCTATATAACAATTGGATTTGGCTATTTTTATCTTCTTGGCTGTGGATTGCGTTTCCATTATTTCTTTAATTGCTTCAAAACCAGAAGCAATAAAAAACTGGAAAGCAGTTAGGGAAAGAATACAATTTAGGCAAGCTTCTTTTCAATTACAAAGAGGAAAAGTAAATACAAATACAAATACTATAGTAATACTGAGGATCAGTAAGCACACCCAACTCTCTTAATTAGGTTGACACACCTATAGCACCTTCATCACATAACAAAATATCAACAATATAGTACTATATGTTATGATGACATAATCAAAACATTCCAATTAAGCATATTCAGAGTTTTAAAAAGTTAGAAACGTAAAATATGCATCTCCAACGTGAGCTCTGCAATAGAGATACATGTTGAAAGGCCTGTACAATATGATAAAAACTTGCCCCATCTTTCTGTGCACCGTAAAAATCCACATGTTAGAGCATGTTTGAGGGTAAATTTGGAATTGTTAAAATCTCTTATTCTTTTTTGTGTGTATTTAAAATCACTTTTGAACCACCCTAGTCTTAGGGCAGGATTCTCTCTTCATGTGTTCTTTTATAGTTCACGTACCAGCATCGTCTTGTTTCTTTATCTGTGAGGGGAAAAGGCATGATTCATTTTCACTTTTGACTTCTTTCAGAACTTACAATGTGGAGAGAGTGTTACAATAGAAGGTCAAACATATACTATCTCAGCTGTAACTCTTCGCTATCAGCTCAGGAAGGGGAAGTATGAACCAAGTGAAAAAAGACTTGATGTTTTGTCCACAGGAAGGTACATCTTGAATTTGTATCTTGAAAATTTGTTAGAAAAATCTTGAGGGAAGAGAAGCAGTAGAAACCCATTGAAATGTTGTATCATAGATTGATAAAATAATGTAATGTTCGTTCTGATATTATCCTATTACAATGATCATTAGTTGAACTAATTCGTGCATATTCGAACTTGCAACTTAGTGTTTCCATGAGCGCCTACTTACCAGCTTGACTAAGAAAGTTCAGT

Coding sequence (CDS)

ATGGCAATGGCTTCATTCAATCTACCTCTTGCTCCTCGTCACAAGACGCAGGGGCGTTTCCAAATTTCTTGTAGAAGAAAAGAAAAGGAACGCAATAATTTTGACCCTTACAAAGTTATTGAAATCACCCCTCCGCCCAAGAACCTCGGCATTCGTTGCTTCCCTCCCAACTTACAATGTGGAGAGAGTGTTACAATAGAAGGTCAAACATATACTATCTCAGCTGTAACTCTTCGCTATCAGCTCAGGAAGGGGAAGTATGAACCAAGTGAAAAAAGACTTGATGTTTTGTCCACAGGAAGGTACATCTTGAATTTGTATCTTGAAAATTTGTTAGAAAAATCTTGA

Protein sequence

MAMASFNLPLAPRHKTQGRFQISCRRKEKERNNFDPYKVIEITPPPKNLGIRCFPPNLQCGESVTIEGQTYTISAVTLRYQLRKGKYEPSEKRLDVLSTGRYILNLYLENLLEKS

Homology

[Close]

BLAST of Cucsat.G10122 vs. NCBI nr
Match: XP_004142788.1 (uncharacterized protein LOC101221627 [Cucumis sativus] >KGN51358.1 hypothetical protein Csa_009241 [Cucumis sativus])

HSP 1 Score: 235 bits (599), Expect = 5.66e-78
Identity = 115/115 (100.00%), Postives = 115/115 (100.00%), Query Frame = 0


Query: 1   MAMASFNLPLAPRHKTQGRFQISCRRKEKERNNFDPYKVIEITPPPKNLGIRCFPPNLQC 60
           MAMASFNLPLAPRHKTQGRFQISCRRKEKERNNFDPYKVIEITPPPKNLGIRCFPPNLQC
Sbjct: 1   MAMASFNLPLAPRHKTQGRFQISCRRKEKERNNFDPYKVIEITPPPKNLGIRCFPPNLQC 60

Query: 61  GESVTIEGQTYTISAVTLRYQLRKGKYEPSEKRLDVLSTGRYILNLYLENLLEKS 115
           GESVTIEGQTYTISAVTLRYQLRKGKYEPSEKRLDVLSTGRYILNLYLENLLEKS
Sbjct: 61  GESVTIEGQTYTISAVTLRYQLRKGKYEPSEKRLDVLSTGRYILNLYLENLLEKS 115

[Close]

BLAST of Cucsat.G10122 vs. NCBI nr
Match: XP_008458808.1 (PREDICTED: uncharacterized protein LOC103498107 [Cucumis melo])

HSP 1 Score: 230 bits (587), Expect = 3.83e-76
Identity = 113/115 (98.26%), Postives = 114/115 (99.13%), Query Frame = 0


Query: 1   MAMASFNLPLAPRHKTQGRFQISCRRKEKERNNFDPYKVIEITPPPKNLGIRCFPPNLQC 60
           MAMASFNLPLAP +KTQGRFQISCRRKEKERNNFDPYKVIEITPPPKNLGIRCFPPNLQC
Sbjct: 1   MAMASFNLPLAPHNKTQGRFQISCRRKEKERNNFDPYKVIEITPPPKNLGIRCFPPNLQC 60

Query: 61  GESVTIEGQTYTISAVTLRYQLRKGKYEPSEKRLDVLSTGRYILNLYLENLLEKS 115
           GESVTIEGQTYTISAVTLRYQLRKGKYEPSEKRLDVLSTGRYILNLYLENLLEKS
Sbjct: 61  GESVTIEGQTYTISAVTLRYQLRKGKYEPSEKRLDVLSTGRYILNLYLENLLEKS 115

[Close]

BLAST of Cucsat.G10122 vs. NCBI nr
Match: XP_038889728.1 (uncharacterized protein LOC120079572 [Benincasa hispida])

HSP 1 Score: 213 bits (543), Expect = 1.98e-69
Identity = 105/115 (91.30%), Postives = 109/115 (94.78%), Query Frame = 0


Query: 1   MAMASFNLPLAPRHKTQGRFQISCRRKEKERNNFDPYKVIEITPPPKNLGIRCFPPNLQC 60
           MAMASFNL LA  HKT+   Q+SCRRKEKERNNFDPYKVIEITPPPK+LGIRCFPPNLQC
Sbjct: 1   MAMASFNLALASHHKTRRLLQLSCRRKEKERNNFDPYKVIEITPPPKSLGIRCFPPNLQC 60

Query: 61  GESVTIEGQTYTISAVTLRYQLRKGKYEPSEKRLDVLSTGRYILNLYLENLLEKS 115
           GE+VTIEGQTYTISAVTLRYQLRKGKYEPSEKRLDVLSTGRYILNLYLENLLEKS
Sbjct: 61  GENVTIEGQTYTISAVTLRYQLRKGKYEPSEKRLDVLSTGRYILNLYLENLLEKS 115

[Close]

BLAST of Cucsat.G10122 vs. NCBI nr
Match: KAG6578668.1 (hypothetical protein SDJN03_23116, partial [Cucurbita argyrosperma subsp. sororia] >KAG7016208.1 hypothetical protein SDJN02_21313, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 211 bits (536), Expect = 4.58e-68
Identity = 106/115 (92.17%), Postives = 108/115 (93.91%), Query Frame = 0


Query: 1   MAMASFNLPLAPRHKTQGRFQISCRRKEKERNNFDPYKVIEITPPPKNLGIRCFPPNLQC 60
           MAMASFNL L P  KT+   QISCRRKEKERNNFDPYKVIEITPPPKNLGIRCFPPNLQC
Sbjct: 23  MAMASFNLALGPHQKTRV-LQISCRRKEKERNNFDPYKVIEITPPPKNLGIRCFPPNLQC 82

Query: 61  GESVTIEGQTYTISAVTLRYQLRKGKYEPSEKRLDVLSTGRYILNLYLENLLEKS 115
           GESVTIEGQTYTISAVTLRYQLRKGKYEPSEKRLDVLSTGRYILNLYL+NLLEKS
Sbjct: 83  GESVTIEGQTYTISAVTLRYQLRKGKYEPSEKRLDVLSTGRYILNLYLQNLLEKS 136

[Close]

BLAST of Cucsat.G10122 vs. NCBI nr
Match: XP_022993339.1 (uncharacterized protein LOC111489380 [Cucurbita maxima] >XP_023551188.1 uncharacterized protein LOC111809077 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 209 bits (531), Expect = 1.30e-67
Identity = 105/115 (91.30%), Postives = 107/115 (93.04%), Query Frame = 0


Query: 1   MAMASFNLPLAPRHKTQGRFQISCRRKEKERNNFDPYKVIEITPPPKNLGIRCFPPNLQC 60
           MAMASFNL L P  KT+   QI CRRKEKERNNFDPYKVIEITPPPKNLGIRCFPPNLQC
Sbjct: 1   MAMASFNLALGPHQKTRV-LQICCRRKEKERNNFDPYKVIEITPPPKNLGIRCFPPNLQC 60

Query: 61  GESVTIEGQTYTISAVTLRYQLRKGKYEPSEKRLDVLSTGRYILNLYLENLLEKS 115
           GESVTIEGQTYTISAVTLRYQLRKGKYEPSEKRLDVLSTGRYILNLYL+NLLEKS
Sbjct: 61  GESVTIEGQTYTISAVTLRYQLRKGKYEPSEKRLDVLSTGRYILNLYLQNLLEKS 114

[Close]

BLAST of Cucsat.G10122 vs. ExPASy TrEMBL
Match: A0A0A0KP15 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G523040 PE=4 SV=1)

HSP 1 Score: 235 bits (599), Expect = 2.74e-78
Identity = 115/115 (100.00%), Postives = 115/115 (100.00%), Query Frame = 0


Query: 1   MAMASFNLPLAPRHKTQGRFQISCRRKEKERNNFDPYKVIEITPPPKNLGIRCFPPNLQC 60
           MAMASFNLPLAPRHKTQGRFQISCRRKEKERNNFDPYKVIEITPPPKNLGIRCFPPNLQC
Sbjct: 1   MAMASFNLPLAPRHKTQGRFQISCRRKEKERNNFDPYKVIEITPPPKNLGIRCFPPNLQC 60

Query: 61  GESVTIEGQTYTISAVTLRYQLRKGKYEPSEKRLDVLSTGRYILNLYLENLLEKS 115
           GESVTIEGQTYTISAVTLRYQLRKGKYEPSEKRLDVLSTGRYILNLYLENLLEKS
Sbjct: 61  GESVTIEGQTYTISAVTLRYQLRKGKYEPSEKRLDVLSTGRYILNLYLENLLEKS 115

[Close]

BLAST of Cucsat.G10122 vs. ExPASy TrEMBL
Match: A0A1S3C8Q2 (uncharacterized protein LOC103498107 OS=Cucumis melo OX=3656 GN=LOC103498107 PE=4 SV=1)

HSP 1 Score: 230 bits (587), Expect = 1.86e-76
Identity = 113/115 (98.26%), Postives = 114/115 (99.13%), Query Frame = 0


Query: 1   MAMASFNLPLAPRHKTQGRFQISCRRKEKERNNFDPYKVIEITPPPKNLGIRCFPPNLQC 60
           MAMASFNLPLAP +KTQGRFQISCRRKEKERNNFDPYKVIEITPPPKNLGIRCFPPNLQC
Sbjct: 1   MAMASFNLPLAPHNKTQGRFQISCRRKEKERNNFDPYKVIEITPPPKNLGIRCFPPNLQC 60

Query: 61  GESVTIEGQTYTISAVTLRYQLRKGKYEPSEKRLDVLSTGRYILNLYLENLLEKS 115
           GESVTIEGQTYTISAVTLRYQLRKGKYEPSEKRLDVLSTGRYILNLYLENLLEKS
Sbjct: 61  GESVTIEGQTYTISAVTLRYQLRKGKYEPSEKRLDVLSTGRYILNLYLENLLEKS 115

[Close]

BLAST of Cucsat.G10122 vs. ExPASy TrEMBL
Match: A0A6J1JZX4 (uncharacterized protein LOC111489380 OS=Cucurbita maxima OX=3661 GN=LOC111489380 PE=4 SV=1)

HSP 1 Score: 209 bits (531), Expect = 6.27e-68
Identity = 105/115 (91.30%), Postives = 107/115 (93.04%), Query Frame = 0


Query: 1   MAMASFNLPLAPRHKTQGRFQISCRRKEKERNNFDPYKVIEITPPPKNLGIRCFPPNLQC 60
           MAMASFNL L P  KT+   QI CRRKEKERNNFDPYKVIEITPPPKNLGIRCFPPNLQC
Sbjct: 1   MAMASFNLALGPHQKTRV-LQICCRRKEKERNNFDPYKVIEITPPPKNLGIRCFPPNLQC 60

Query: 61  GESVTIEGQTYTISAVTLRYQLRKGKYEPSEKRLDVLSTGRYILNLYLENLLEKS 115
           GESVTIEGQTYTISAVTLRYQLRKGKYEPSEKRLDVLSTGRYILNLYL+NLLEKS
Sbjct: 61  GESVTIEGQTYTISAVTLRYQLRKGKYEPSEKRLDVLSTGRYILNLYLQNLLEKS 114

[Close]

BLAST of Cucsat.G10122 vs. ExPASy TrEMBL
Match: A0A6J1FGM6 (uncharacterized protein LOC111445315 OS=Cucurbita moschata OX=3662 GN=LOC111445315 PE=4 SV=1)

HSP 1 Score: 208 bits (529), Expect = 1.27e-67
Identity = 104/115 (90.43%), Postives = 107/115 (93.04%), Query Frame = 0


Query: 1   MAMASFNLPLAPRHKTQGRFQISCRRKEKERNNFDPYKVIEITPPPKNLGIRCFPPNLQC 60
           MAMASFNL L P  KT+   QI CRRK+KERNNFDPYKVIEITPPPKNLGIRCFPPNLQC
Sbjct: 1   MAMASFNLALGPHQKTRV-LQIDCRRKDKERNNFDPYKVIEITPPPKNLGIRCFPPNLQC 60

Query: 61  GESVTIEGQTYTISAVTLRYQLRKGKYEPSEKRLDVLSTGRYILNLYLENLLEKS 115
           GESVTIEGQTYTISAVTLRYQLRKGKYEPSEKRLDVLSTGRYILNLYL+NLLEKS
Sbjct: 61  GESVTIEGQTYTISAVTLRYQLRKGKYEPSEKRLDVLSTGRYILNLYLQNLLEKS 114

[Close]

BLAST of Cucsat.G10122 vs. ExPASy TrEMBL
Match: A0A6J1BVQ0 (uncharacterized protein LOC111006184 OS=Momordica charantia OX=3673 GN=LOC111006184 PE=4 SV=1)

HSP 1 Score: 200 bits (509), Expect = 1.33e-64
Identity = 101/113 (89.38%), Postives = 104/113 (92.04%), Query Frame = 0


Query: 3   MASFNLPLAPRHKTQGRFQISCRRKEKERNNFDPYKVIEITPPPKNLGIRCFPPNLQCGE 62
           MAS NL LA   KT+   Q+SCRRKEKERNNFDPYKVIEITPPPKNLGIRCFPPNLQCGE
Sbjct: 1   MASLNLALAAHQKTR-LLQVSCRRKEKERNNFDPYKVIEITPPPKNLGIRCFPPNLQCGE 60

Query: 63  SVTIEGQTYTISAVTLRYQLRKGKYEPSEKRLDVLSTGRYILNLYLENLLEKS 115
           SVTIEGQTYTISAVT RYQLRKGKYEP+EKRLDVLSTGRYILNLYLENLLEKS
Sbjct: 61  SVTIEGQTYTISAVTHRYQLRKGKYEPTEKRLDVLSTGRYILNLYLENLLEKS 112

The following BLAST results are available for this feature:

BLAST of Cucsat.G10122 vs.


Match Name	E-value	Identity	Description

BLAST of Cucsat.G10122 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004142788.1	5.66e-78	100.00	uncharacterized protein LOC101221627 [Cucumis sativus] >KGN51358.1 hypothetical ...	[more]
XP_008458808.1	3.83e-76	98.26	PREDICTED: uncharacterized protein LOC103498107 [Cucumis melo]	[more]
XP_038889728.1	1.98e-69	91.30	uncharacterized protein LOC120079572 [Benincasa hispida]	[more]
KAG6578668.1	4.58e-68	92.17	hypothetical protein SDJN03_23116, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_022993339.1	1.30e-67	91.30	uncharacterized protein LOC111489380 [Cucurbita maxima] >XP_023551188.1 uncharac...	[more]

BLAST of Cucsat.G10122 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KP15	2.74e-78	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G523040 PE=4 SV=1	[more]
A0A1S3C8Q2	1.86e-76	98.26	uncharacterized protein LOC103498107 OS=Cucumis melo OX=3656 GN=LOC103498107 PE=...	[more]
A0A6J1JZX4	6.27e-68	91.30	uncharacterized protein LOC111489380 OS=Cucurbita maxima OX=3661 GN=LOC111489380...	[more]
A0A6J1FGM6	1.27e-67	90.43	uncharacterized protein LOC111445315 OS=Cucurbita moschata OX=3662 GN=LOC1114453...	[more]
A0A6J1BVQ0	1.33e-64	89.38	uncharacterized protein LOC111006184 OS=Momordica charantia OX=3673 GN=LOC111006...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (B10) v3
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR36397	OSJNBA0081L15.1 PROTEIN	coord: 11..110

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cucsat.G10122.T2	Cucsat.G10122.T2	mRNA
Cucsat.G10122.T1	Cucsat.G10122.T1	mRNA
Cucsat.G10122.T4	Cucsat.G10122.T4	mRNA
Cucsat.G10122.T3	Cucsat.G10122.T3	mRNA
Cucsat.G10122.T5	Cucsat.G10122.T5	mRNA