Cucsat.G10122.T5 (mRNA) Cucumber (B10) v3

Overview


Name	Cucsat.G10122.T5
Type	mRNA
Organism	Cucumis sativus L. var. sativus cv B10 (Cucumber (B10) v3)
Description	Nuclear pore membrane glycoprotein 210-like
Location	ctg1673: 5786075 .. 5788071 (+)
RNA-Seq Expression	Cucsat.G10122.T5
Synteny	Cucsat.G10122.T5

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

CATTCATCGGATTTAGTTGATACTTGTAATGAATCTCCGTTTTGTTTCTCCTTTGCAGACGCAGGGGCGTTTCCAAATTTCTTGTAGAAGAAAAGAAAAGGAACGCAATAATTTTGACCCTTACAAAGTTATTGAAATCACCCCTCCGCCCAAGAACCTCGGCATTCGTTGCTTCCCTCCCGTGAGTTTTCCATTTTGACTCTCTATCTCCTAACTGCGTATTGGCTTTCTTGTACGCTTATATGTTTTATTGATGTGGAGTAGCGAGCTTTAAGATTATTTGGTTAAGTTCACGTTTGGCTATGTAATTTACTGTTATGCTAATTTGTATAGGGAGTAGCTCGTTTTCGTTTGTTTTTGAGACAGTGGGAGAAGAAATGGGTTACTGGGAGTTGATTAAATACGATTTGTTAGTCTCTCTACATGAAAAATCATCACCACTTCGATGGTTCTGACTAATCCATGGCCCTCTCCAGGACTTTGCAAGTCTCTGATGAAAAATGCAGTTTCCATTGTATACACTGAACGGCAAATATTTTTAAGAAAAGTGAAAAATATATTGAAGAGATAAGAAAACAAAGAAGCAGATGGATGAAAATAGAGTTTCGATTGTAGATACATAGAAAGCCAACGAAATGGTTATCAAAGAGGGATTTAATAGTGTGCTTCATGAGTTTCATACTAAAACTTTTGCTTTGTGTTTCAGTTTATAAAAGATTTAGTTTTAACATAATACCACTGTGCTGAGAATAGAAGTGGAGTTAATTGATAGATTTCAGCCCATGTGACTTGGGCATGAAATTGTTATACACATGAAATATTTCCACCTTTTTAGATTGCATGTATCATTGTTGCGCTACTGAGTTCATTCAGCTTTCCTTGCTTCCCTCATCTAAACCACTCATCATTTGAGATGCTTTCTTCGTGGTCTTTCTCTGAACTGAAAACATAAGATCCTCTAATATTTTCCTTCCCCAGAAATACCACTCATCATATCGATACTCGATCATCGCTTTCGTAACTATGGTTATTTTCTATATAACAATTGGATTTGGCTATTTTTATCTTCTTGGCTGTGGATTGCGTTTCCATTATTTCTTTAATTGCTTCAAAACCAGAAGCAATAAAAAACTGGAAAGCAGTTAGGGAAAGAATACAATTTAGGCAAGCTTCTTTTCAATTACAAAGAGGAAAAGTAAATACAAATACAAATACTATAGTAATACTGAGGATCAGTAAGCACACCCAACTCTCTTAATTAGGTTGACACACCTATAGCACCTTCATCACATAACAAAATATCAACAATATAGTACTATATGTTATGATGACATAATCAAAACATTCCAATTAAGCATATTCAGAGTTTTAAAAAGTTAGAAACGTAAAATATGCATCTCCAACGTGAGCTCTGCAATAGAGATACATGTTGAAAGGCCTGTACAATATGATAAAAACTTGCCCCATCTTTCTGTGCACCGTAAAAATCCACATGTTAGAGCATGTTTGAGGGTAAATTTGGAATTGTTAAAATCTCTTATTCTTTTTTGTGTGTATTTAAAATCACTTTTGAACCACCCTAGTCTTAGGGCAGGATTCTCTCTTCATGTGTTCTTTTATAGTTCACGTACCAGCATCGTCTTGTTTCTTTATCTGTGAGGGGAAAAGGCATGATTCATTTTCACTTTTGACTTCTTTCAGAACTTACAATGTGGAGAGAGTGTTACAATAGAAGGTCAAACATATACTATCTCAGCTGTAACTCTTCGCTATCAGCTCAGGAAGGGGAAGTATGAACCAAGTGAAAAAAGACTTGATGTTTTGTCCACAGGAAGGTACATCTTGAATTTGTATCTTGAAAATTTGTTAGAAAAATCTTGAGGGAAGAGAAGCAGTAGAAACCCATTGAAATGTTGTATCATAGATTGATAAAATAATGTAATGTTCGTTCTGATATTATCCTATTACAATGATCATTAGTTGAACTAATTCGTGCA

Coding sequence (CDS)

ATGAATCTCCGTTTTGTTTCTCCTTTGCAGACGCAGGGGCGTTTCCAAATTTCTTGTAGAAGAAAAGAAAAGGAACGCAATAATTTTGACCCTTACAAAGTTATTGAAATCACCCCTCCGCCCAAGAACCTCGGCATTCGTTGCTTCCCTCCCAACTTACAATGTGGAGAGAGTGTTACAATAGAAGGTCAAACATATACTATCTCAGCTGTAACTCTTCGCTATCAGCTCAGGAAGGGGAAGTATGAACCAAGTGAAAAAAGACTTGATGTTTTGTCCACAGGAAGGTACATCTTGAATTTGTATCTTGAAAATTTGTTAGAAAAATCTTGA

Protein sequence

MNLRFVSPLQTQGRFQISCRRKEKERNNFDPYKVIEITPPPKNLGIRCFPPNLQCGESVTIEGQTYTISAVTLRYQLRKGKYEPSEKRLDVLSTGRYILNLYLENLLEKS

Homology

[Close]

BLAST of Cucsat.G10122.T5 vs. NCBI nr
Match: XP_004142788.1 (uncharacterized protein LOC101221627 [Cucumis sativus] >KGN51358.1 hypothetical protein Csa_009241 [Cucumis sativus])

HSP 1 Score: 208 bits (530), Expect = 1.55e-67
Identity = 102/109 (93.58%), Postives = 103/109 (94.50%), Query Frame = 0


Query: 2   NLRFVSPLQTQGRFQISCRRKEKERNNFDPYKVIEITPPPKNLGIRCFPPNLQCGESVTI 61
           NL      +TQGRFQISCRRKEKERNNFDPYKVIEITPPPKNLGIRCFPPNLQCGESVTI
Sbjct: 7   NLPLAPRHKTQGRFQISCRRKEKERNNFDPYKVIEITPPPKNLGIRCFPPNLQCGESVTI 66

Query: 62  EGQTYTISAVTLRYQLRKGKYEPSEKRLDVLSTGRYILNLYLENLLEKS 110
           EGQTYTISAVTLRYQLRKGKYEPSEKRLDVLSTGRYILNLYLENLLEKS
Sbjct: 67  EGQTYTISAVTLRYQLRKGKYEPSEKRLDVLSTGRYILNLYLENLLEKS 115

[Close]

BLAST of Cucsat.G10122.T5 vs. NCBI nr
Match: XP_008458808.1 (PREDICTED: uncharacterized protein LOC103498107 [Cucumis melo])

HSP 1 Score: 208 bits (530), Expect = 1.55e-67
Identity = 102/109 (93.58%), Postives = 103/109 (94.50%), Query Frame = 0


Query: 2   NLRFVSPLQTQGRFQISCRRKEKERNNFDPYKVIEITPPPKNLGIRCFPPNLQCGESVTI 61
           NL      +TQGRFQISCRRKEKERNNFDPYKVIEITPPPKNLGIRCFPPNLQCGESVTI
Sbjct: 7   NLPLAPHNKTQGRFQISCRRKEKERNNFDPYKVIEITPPPKNLGIRCFPPNLQCGESVTI 66

Query: 62  EGQTYTISAVTLRYQLRKGKYEPSEKRLDVLSTGRYILNLYLENLLEKS 110
           EGQTYTISAVTLRYQLRKGKYEPSEKRLDVLSTGRYILNLYLENLLEKS
Sbjct: 67  EGQTYTISAVTLRYQLRKGKYEPSEKRLDVLSTGRYILNLYLENLLEKS 115

[Close]

BLAST of Cucsat.G10122.T5 vs. NCBI nr
Match: XP_038889728.1 (uncharacterized protein LOC120079572 [Benincasa hispida])

HSP 1 Score: 197 bits (501), Expect = 4.10e-63
Identity = 96/109 (88.07%), Postives = 101/109 (92.66%), Query Frame = 0


Query: 2   NLRFVSPLQTQGRFQISCRRKEKERNNFDPYKVIEITPPPKNLGIRCFPPNLQCGESVTI 61
           NL   S  +T+   Q+SCRRKEKERNNFDPYKVIEITPPPK+LGIRCFPPNLQCGE+VTI
Sbjct: 7   NLALASHHKTRRLLQLSCRRKEKERNNFDPYKVIEITPPPKSLGIRCFPPNLQCGENVTI 66

Query: 62  EGQTYTISAVTLRYQLRKGKYEPSEKRLDVLSTGRYILNLYLENLLEKS 110
           EGQTYTISAVTLRYQLRKGKYEPSEKRLDVLSTGRYILNLYLENLLEKS
Sbjct: 67  EGQTYTISAVTLRYQLRKGKYEPSEKRLDVLSTGRYILNLYLENLLEKS 115

[Close]

BLAST of Cucsat.G10122.T5 vs. NCBI nr
Match: KAG6578668.1 (hypothetical protein SDJN03_23116, partial [Cucurbita argyrosperma subsp. sororia] >KAG7016208.1 hypothetical protein SDJN02_21313, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 197 bits (501), Expect = 8.09e-63
Identity = 96/105 (91.43%), Postives = 98/105 (93.33%), Query Frame = 0


Query: 6   VSPLQTQGRFQISCRRKEKERNNFDPYKVIEITPPPKNLGIRCFPPNLQCGESVTIEGQT 65
           + P Q     QISCRRKEKERNNFDPYKVIEITPPPKNLGIRCFPPNLQCGESVTIEGQT
Sbjct: 32  LGPHQKTRVLQISCRRKEKERNNFDPYKVIEITPPPKNLGIRCFPPNLQCGESVTIEGQT 91

Query: 66  YTISAVTLRYQLRKGKYEPSEKRLDVLSTGRYILNLYLENLLEKS 110
           YTISAVTLRYQLRKGKYEPSEKRLDVLSTGRYILNLYL+NLLEKS
Sbjct: 92  YTISAVTLRYQLRKGKYEPSEKRLDVLSTGRYILNLYLQNLLEKS 136

[Close]

BLAST of Cucsat.G10122.T5 vs. NCBI nr
Match: XP_022993339.1 (uncharacterized protein LOC111489380 [Cucurbita maxima] >XP_023551188.1 uncharacterized protein LOC111809077 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 195 bits (496), Expect = 2.30e-62
Identity = 95/105 (90.48%), Postives = 97/105 (92.38%), Query Frame = 0


Query: 6   VSPLQTQGRFQISCRRKEKERNNFDPYKVIEITPPPKNLGIRCFPPNLQCGESVTIEGQT 65
           + P Q     QI CRRKEKERNNFDPYKVIEITPPPKNLGIRCFPPNLQCGESVTIEGQT
Sbjct: 10  LGPHQKTRVLQICCRRKEKERNNFDPYKVIEITPPPKNLGIRCFPPNLQCGESVTIEGQT 69

Query: 66  YTISAVTLRYQLRKGKYEPSEKRLDVLSTGRYILNLYLENLLEKS 110
           YTISAVTLRYQLRKGKYEPSEKRLDVLSTGRYILNLYL+NLLEKS
Sbjct: 70  YTISAVTLRYQLRKGKYEPSEKRLDVLSTGRYILNLYLQNLLEKS 114

[Close]

BLAST of Cucsat.G10122.T5 vs. ExPASy TrEMBL
Match: A0A0A0KP15 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G523040 PE=4 SV=1)

HSP 1 Score: 208 bits (530), Expect = 7.49e-68
Identity = 102/109 (93.58%), Postives = 103/109 (94.50%), Query Frame = 0


Query: 2   NLRFVSPLQTQGRFQISCRRKEKERNNFDPYKVIEITPPPKNLGIRCFPPNLQCGESVTI 61
           NL      +TQGRFQISCRRKEKERNNFDPYKVIEITPPPKNLGIRCFPPNLQCGESVTI
Sbjct: 7   NLPLAPRHKTQGRFQISCRRKEKERNNFDPYKVIEITPPPKNLGIRCFPPNLQCGESVTI 66

Query: 62  EGQTYTISAVTLRYQLRKGKYEPSEKRLDVLSTGRYILNLYLENLLEKS 110
           EGQTYTISAVTLRYQLRKGKYEPSEKRLDVLSTGRYILNLYLENLLEKS
Sbjct: 67  EGQTYTISAVTLRYQLRKGKYEPSEKRLDVLSTGRYILNLYLENLLEKS 115

[Close]

BLAST of Cucsat.G10122.T5 vs. ExPASy TrEMBL
Match: A0A1S3C8Q2 (uncharacterized protein LOC103498107 OS=Cucumis melo OX=3656 GN=LOC103498107 PE=4 SV=1)

HSP 1 Score: 208 bits (530), Expect = 7.49e-68
Identity = 102/109 (93.58%), Postives = 103/109 (94.50%), Query Frame = 0


Query: 2   NLRFVSPLQTQGRFQISCRRKEKERNNFDPYKVIEITPPPKNLGIRCFPPNLQCGESVTI 61
           NL      +TQGRFQISCRRKEKERNNFDPYKVIEITPPPKNLGIRCFPPNLQCGESVTI
Sbjct: 7   NLPLAPHNKTQGRFQISCRRKEKERNNFDPYKVIEITPPPKNLGIRCFPPNLQCGESVTI 66

Query: 62  EGQTYTISAVTLRYQLRKGKYEPSEKRLDVLSTGRYILNLYLENLLEKS 110
           EGQTYTISAVTLRYQLRKGKYEPSEKRLDVLSTGRYILNLYLENLLEKS
Sbjct: 67  EGQTYTISAVTLRYQLRKGKYEPSEKRLDVLSTGRYILNLYLENLLEKS 115

[Close]

BLAST of Cucsat.G10122.T5 vs. ExPASy TrEMBL
Match: A0A6J1JZX4 (uncharacterized protein LOC111489380 OS=Cucurbita maxima OX=3661 GN=LOC111489380 PE=4 SV=1)

HSP 1 Score: 195 bits (496), Expect = 1.11e-62
Identity = 95/105 (90.48%), Postives = 97/105 (92.38%), Query Frame = 0


Query: 6   VSPLQTQGRFQISCRRKEKERNNFDPYKVIEITPPPKNLGIRCFPPNLQCGESVTIEGQT 65
           + P Q     QI CRRKEKERNNFDPYKVIEITPPPKNLGIRCFPPNLQCGESVTIEGQT
Sbjct: 10  LGPHQKTRVLQICCRRKEKERNNFDPYKVIEITPPPKNLGIRCFPPNLQCGESVTIEGQT 69

Query: 66  YTISAVTLRYQLRKGKYEPSEKRLDVLSTGRYILNLYLENLLEKS 110
           YTISAVTLRYQLRKGKYEPSEKRLDVLSTGRYILNLYL+NLLEKS
Sbjct: 70  YTISAVTLRYQLRKGKYEPSEKRLDVLSTGRYILNLYLQNLLEKS 114

[Close]

BLAST of Cucsat.G10122.T5 vs. ExPASy TrEMBL
Match: A0A6J1FGM6 (uncharacterized protein LOC111445315 OS=Cucurbita moschata OX=3662 GN=LOC111445315 PE=4 SV=1)

HSP 1 Score: 194 bits (494), Expect = 2.25e-62
Identity = 94/105 (89.52%), Postives = 97/105 (92.38%), Query Frame = 0


Query: 6   VSPLQTQGRFQISCRRKEKERNNFDPYKVIEITPPPKNLGIRCFPPNLQCGESVTIEGQT 65
           + P Q     QI CRRK+KERNNFDPYKVIEITPPPKNLGIRCFPPNLQCGESVTIEGQT
Sbjct: 10  LGPHQKTRVLQIDCRRKDKERNNFDPYKVIEITPPPKNLGIRCFPPNLQCGESVTIEGQT 69

Query: 66  YTISAVTLRYQLRKGKYEPSEKRLDVLSTGRYILNLYLENLLEKS 110
           YTISAVTLRYQLRKGKYEPSEKRLDVLSTGRYILNLYL+NLLEKS
Sbjct: 70  YTISAVTLRYQLRKGKYEPSEKRLDVLSTGRYILNLYLQNLLEKS 114

[Close]

BLAST of Cucsat.G10122.T5 vs. ExPASy TrEMBL
Match: A0A6J1BVQ0 (uncharacterized protein LOC111006184 OS=Momordica charantia OX=3673 GN=LOC111006184 PE=4 SV=1)

HSP 1 Score: 192 bits (489), Expect = 1.22e-61
Identity = 95/110 (86.36%), Postives = 101/110 (91.82%), Query Frame = 0


Query: 1   MNLRFVSPLQTQGRFQISCRRKEKERNNFDPYKVIEITPPPKNLGIRCFPPNLQCGESVT 60
           +NL   +  +T+   Q+SCRRKEKERNNFDPYKVIEITPPPKNLGIRCFPPNLQCGESVT
Sbjct: 4   LNLALAAHQKTRL-LQVSCRRKEKERNNFDPYKVIEITPPPKNLGIRCFPPNLQCGESVT 63

Query: 61  IEGQTYTISAVTLRYQLRKGKYEPSEKRLDVLSTGRYILNLYLENLLEKS 110
           IEGQTYTISAVT RYQLRKGKYEP+EKRLDVLSTGRYILNLYLENLLEKS
Sbjct: 64  IEGQTYTISAVTHRYQLRKGKYEPTEKRLDVLSTGRYILNLYLENLLEKS 112

The following BLAST results are available for this feature:

BLAST of Cucsat.G10122.T5 vs.


Match Name	E-value	Identity	Description

BLAST of Cucsat.G10122.T5 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004142788.1	1.55e-67	93.58	uncharacterized protein LOC101221627 [Cucumis sativus] >KGN51358.1 hypothetical ...	[more]
XP_008458808.1	1.55e-67	93.58	PREDICTED: uncharacterized protein LOC103498107 [Cucumis melo]	[more]
XP_038889728.1	4.10e-63	88.07	uncharacterized protein LOC120079572 [Benincasa hispida]	[more]
KAG6578668.1	8.09e-63	91.43	hypothetical protein SDJN03_23116, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_022993339.1	2.30e-62	90.48	uncharacterized protein LOC111489380 [Cucurbita maxima] >XP_023551188.1 uncharac...	[more]

BLAST of Cucsat.G10122.T5 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KP15	7.49e-68	93.58	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G523040 PE=4 SV=1	[more]
A0A1S3C8Q2	7.49e-68	93.58	uncharacterized protein LOC103498107 OS=Cucumis melo OX=3656 GN=LOC103498107 PE=...	[more]
A0A6J1JZX4	1.11e-62	90.48	uncharacterized protein LOC111489380 OS=Cucurbita maxima OX=3661 GN=LOC111489380...	[more]
A0A6J1FGM6	2.25e-62	89.52	uncharacterized protein LOC111445315 OS=Cucurbita moschata OX=3662 GN=LOC1114453...	[more]
A0A6J1BVQ0	1.22e-61	86.36	uncharacterized protein LOC111006184 OS=Momordica charantia OX=3673 GN=LOC111006...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (B10) v3
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR36397	OSJNBA0081L15.1 PROTEIN	coord: 11..110

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Cucsat.G10122	Cucsat.G10122	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cucsat.G10122.T5.E1	Cucsat.G10122.T5.E1	exon
Cucsat.G10122.T5.E2	Cucsat.G10122.T5.E2	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cucsat.G10122.T5.C1	Cucsat.G10122.T5.C1	CDS
Cucsat.G10122.T5.C2	Cucsat.G10122.T5.C2	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Cucsat.G10122.T5	Cucsat.G10122.T5-protein	polypeptide