Csor.00g238720 (gene) Silver-seed gourd (wild; sororia) v1

Overview


Name	Csor.00g238720
Type	gene
Organism	Cucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Description	Unknown protein
Location	Csor_Chr04: 81146 .. 83737 (+)
RNA-Seq Expression	Csor.00g238720
Synteny	Csor.00g238720

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSstart_codoninitialpolypeptideintronterminalstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAAACCCCCAGAAACCACAAATTCAAGTACAGAGAAGGACAGAAAATCCCAAAAAGAAAAAGAACAGAAAACAGACACCCAGATGAAAGGTTCGCAAGAAACTGAAATCCCATGAAGCAAAAATCGAGAAAAGAGAAGTAGGTTCTTACCATTTGTGGGCACAAAAATGGGATGTAGGGGTAGATGAAGTTGTAGAGGATTGAGAGTGAGTTTGTGGAGTAGAGTGGTGATGTAGTACTAGGAAAATGATACAGAGACGCACAGACAAGGTGATGGATGTAGTGCTACGAAAAGGAAATAGAGAAGCACAGACAAGGGGACATATGGTGACACCCAATTTGTTTCAATTTGTTTCAATTTGTTTCAATTTGTTTCAACTTTCAACTCATGGTGGTGGGGAAAAGGACTCGCAGATTAAACCAAAGGATAAATTATTCATGCAAGGTCTAAATATGGTGATAACTAAAGTTCTTACCTTTTTCCAAGTTCTGTTTTATGGGTCAACTTTTAGCTAGTTAGACTTTAAATTTGCACGTCTTTCTAAAATTACTACCATTATTTTCTCGAATAACATCTCTTAAATTCAATGAATTTGTAAAAGAAAAAAAAAGATTGAATTACTCTTTCCTTTAGCTTGTGACGTTAAATTGAGATAAACTATAGCAACCTCAATATTTAATTTCAACAAAATATATATATATATTTAGGTGATCTTCAAAAGGTTCAATTACTCGTTTTAATTGAATTGTTACACATAGCTTCAAAATCACTCTATTACTCTTATAACTAGATTTTAATAACACTGTAATTGCAATCTTAAAAATGGTAATGTTAGATTTTTTTTTTTTAAAAAAAAACATTGATAATATTTTTTTTAAAAAAAAATGAACTCATTTATAGCACTAAACTTTAGAGTCGTATTGGTGGAGAGAAAAAAAAAAAGTTTTAAAATGCAAGAGCAAAGACTCGAAGGGTGAATAATGAATTGAAAATAGGTGGGGAGTGGGGTTGGGTTGATGAGAGTACTATGGTGTCCTACGGGAAGAGAGTAAATGGCCATAAAAGGCACACAGACAGAGTACATGCATTGGTGCCTTTTTCTTTGTTTCTCTCCAATATTATGTGCATATCTTGTTACCAATCCAAAGTGGGGTACATAATTAGCAATAGGGATTCAGGCTTAGAGTGTTAAAGTAAGATGAGGTGAAGAACTCATTTTTGAAGGTGCCATGCTCGTACCCGAGTTCCGACTTGGAACTTGAGATACTTCCCGAGACTTACAACCGATGAATCCCTTGTTTACTCGTGGGAAACTCGGAGGCCAAAATGGAGCAACATTATGATCGTCTTCCATAAAAAAACGCAGAATAAGTAAGTGTTGGGTAGGACTGACGTGAGAATTGAGATTATTTTAGTGTCGGGGGTAGGTACAAAATCAAAAGAAGGAAACACATCCTCCCAGAATCAACTCATAAATAAATATCAGAGAGGGGAAATCATTACAAAACACAACTCCTCAATCAATTCCATATGTATTGCATAGAGGCTTGAGAGCAAATTTTGTAGAGGTTTGAGAGCAAATTTTGTAGAGGTTTGAGAGCAAATTTTGTAGAGGTTTGAGAGCGAGGTGAGGGTGTTGTAGTTGTAGGAAAGGGAAGGGAAATAGAGAACCAATTTGAATTTGTTCCAAGTCCAACTTTGTTGATGCCATTGTGGTGGGGAAGGGGGGAAGTGGGGCAATGGGGCAATGGGGCAATGGGGCAATGGGGCAATCATGAACGTGGAATTCTGATTGCCAATTCAATACAATGTGCAAACATTCATGAATGGGCTTCACCTTCACCCCGCCCAACACAGTTTTAAAACAATAACAAACTCTTGTGCCCATATTTCCCCATTGGGCCCAAATATCAATTTGGTCCTAACCCAATGTATTTTGGACCCTCATCTTTTATTTTAGGAAATCAGAATCAAATCAAAAGGAGACATAAAATGGAAAAAAAGTAAATGGGTAAACTATCTTTTTTTTTATATATGAATGGAAGAGAGCAATCAATTTTGTGAGACGTACAAGGAATAAAGTGATGATTTAAGTTTAGAATTATTTTTCCATTATTTTAAAGGTTTAAATGAAAGGAAAATGAAAAAATGTAGCCCCTTTGAAAATCATAACAACTCATGATTTCATCCAACCATTATTTCTCCATTATTTAAAAAGCTTTAAAATACACCTTTTTCTATAAAAGCAGGAACATCAAAGTCCAATAGGTAGTAGCATTACTACCCAGGGTTGGTTTGAATTCTCCCTCGAAAAAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAATTCGGGAAGGTGGTAATTAATGAGGAGTTGAATGGTTGTGGTGGGTAA

mRNA sequence

ATGAAAACCCCCAGAAACCACAAATTCAAGTACAGAGAAGGACAGAAAATCCCAAAAAGAAAAAGAACAGAAAACAGACACCCAGATGAAAGGGTTGGTTTGAATTCTCCCTCGAAAAAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAATTCGGGAAGGTGGTAATTAATGAGGAGTTGAATGGTTGTGGTGGGTAA

Coding sequence (CDS)

ATGAAAACCCCCAGAAACCACAAATTCAAGTACAGAGAAGGACAGAAAATCCCAAAAAGAAAAAGAACAGAAAACAGACACCCAGATGAAAGGGTTGGTTTGAATTCTCCCTCGAAAAAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAATTCGGGAAGGTGGTAATTAATGAGGAGTTGAATGGTTGTGGTGGGTAA

Protein sequence

MKTPRNHKFKYREGQKIPKRKRTENRHPDERVGLNSPSKKEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEFGKVVINEELNGCGG

Homology

[Close]

BLAST of Csor.00g238720 vs. NCBI nr
Match: KAG6599864.1 (hypothetical protein SDJN03_05097, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 109 bits (273), Expect = 7.03e-28
Identity = 130/130 (100.00%), Postives = 130/130 (100.00%), Query Frame = 0


Query: 1   MKTPRNHKFKYREGQKIPKRKRTENRHPDERVGLNSPSKKEEEEEEEEEEEEEEEEEEEE 60
           MKTPRNHKFKYREGQKIPKRKRTENRHPDERVGLNSPSKKEEEEEEEEEEEEEEEEEEEE
Sbjct: 1   MKTPRNHKFKYREGQKIPKRKRTENRHPDERVGLNSPSKKEEEEEEEEEEEEEEEEEEEE 60

Query: 61  EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEFGKVV 120
           EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEFGKVV
Sbjct: 61  EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEFGKVV 120

Query: 121 INEELNGCGG 130
           INEELNGCGG
Sbjct: 121 INEELNGCGG 130

The following BLAST results are available for this feature:

BLAST of Csor.00g238720 vs.


Match Name	E-value	Identity	Description

BLAST of Csor.00g238720 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6599864.1	7.03e-28	100.00	hypothetical protein SDJN03_05097, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of Csor.00g238720 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Csor.00g238720 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 36..116
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..130
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 41..118
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..16
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 17..40

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csor.00g238720.m01	Csor.00g238720.m01	mRNA