Csor.00g238720.m01 (mRNA) Silver-seed gourd (wild; sororia) v1

Overview


Name	Csor.00g238720.m01
Type	mRNA
Organism	Cucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Description	Unknown protein
Location	Csor_Chr04: 81146 .. 83737 (+)
Sequence length	393
RNA-Seq Expression	Csor.00g238720.m01
Synteny	Csor.00g238720.m01

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSstart_codoninitialpolypeptideintronterminalstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAAACCCCCAGAAACCACAAATTCAAGTACAGAGAAGGACAGAAAATCCCAAAAAGAAAAAGAACAGAAAACAGACACCCAGATGAAAGGTTCGCAAGAAACTGAAATCCCATGAAGCAAAAATCGAGAAAAGAGAAGTAGGTTCTTACCATTTGTGGGCACAAAAATGGGATGTAGGGGTAGATGAAGTTGTAGAGGATTGAGAGTGAGTTTGTGGAGTAGAGTGGTGATGTAGTACTAGGAAAATGATACAGAGACGCACAGACAAGGTGATGGATGTAGTGCTACGAAAAGGAAATAGAGAAGCACAGACAAGGGGACATATGGTGACACCCAATTTGTTTCAATTTGTTTCAATTTGTTTCAATTTGTTTCAACTTTCAACTCATGGTGGTGGGGAAAAGGACTCGCAGATTAAACCAAAGGATAAATTATTCATGCAAGGTCTAAATATGGTGATAACTAAAGTTCTTACCTTTTTCCAAGTTCTGTTTTATGGGTCAACTTTTAGCTAGTTAGACTTTAAATTTGCACGTCTTTCTAAAATTACTACCATTATTTTCTCGAATAACATCTCTTAAATTCAATGAATTTGTAAAAGAAAAAAAAAGATTGAATTACTCTTTCCTTTAGCTTGTGACGTTAAATTGAGATAAACTATAGCAACCTCAATATTTAATTTCAACAAAATATATATATATATTTAGGTGATCTTCAAAAGGTTCAATTACTCGTTTTAATTGAATTGTTACACATAGCTTCAAAATCACTCTATTACTCTTATAACTAGATTTTAATAACACTGTAATTGCAATCTTAAAAATGGTAATGTTAGATTTTTTTTTTTTAAAAAAAAACATTGATAATATTTTTTTTAAAAAAAAATGAACTCATTTATAGCACTAAACTTTAGAGTCGTATTGGTGGAGAGAAAAAAAAAAAGTTTTAAAATGCAAGAGCAAAGACTCGAAGGGTGAATAATGAATTGAAAATAGGTGGGGAGTGGGGTTGGGTTGATGAGAGTACTATGGTGTCCTACGGGAAGAGAGTAAATGGCCATAAAAGGCACACAGACAGAGTACATGCATTGGTGCCTTTTTCTTTGTTTCTCTCCAATATTATGTGCATATCTTGTTACCAATCCAAAGTGGGGTACATAATTAGCAATAGGGATTCAGGCTTAGAGTGTTAAAGTAAGATGAGGTGAAGAACTCATTTTTGAAGGTGCCATGCTCGTACCCGAGTTCCGACTTGGAACTTGAGATACTTCCCGAGACTTACAACCGATGAATCCCTTGTTTACTCGTGGGAAACTCGGAGGCCAAAATGGAGCAACATTATGATCGTCTTCCATAAAAAAACGCAGAATAAGTAAGTGTTGGGTAGGACTGACGTGAGAATTGAGATTATTTTAGTGTCGGGGGTAGGTACAAAATCAAAAGAAGGAAACACATCCTCCCAGAATCAACTCATAAATAAATATCAGAGAGGGGAAATCATTACAAAACACAACTCCTCAATCAATTCCATATGTATTGCATAGAGGCTTGAGAGCAAATTTTGTAGAGGTTTGAGAGCAAATTTTGTAGAGGTTTGAGAGCAAATTTTGTAGAGGTTTGAGAGCGAGGTGAGGGTGTTGTAGTTGTAGGAAAGGGAAGGGAAATAGAGAACCAATTTGAATTTGTTCCAAGTCCAACTTTGTTGATGCCATTGTGGTGGGGAAGGGGGGAAGTGGGGCAATGGGGCAATGGGGCAATGGGGCAATGGGGCAATCATGAACGTGGAATTCTGATTGCCAATTCAATACAATGTGCAAACATTCATGAATGGGCTTCACCTTCACCCCGCCCAACACAGTTTTAAAACAATAACAAACTCTTGTGCCCATATTTCCCCATTGGGCCCAAATATCAATTTGGTCCTAACCCAATGTATTTTGGACCCTCATCTTTTATTTTAGGAAATCAGAATCAAATCAAAAGGAGACATAAAATGGAAAAAAAGTAAATGGGTAAACTATCTTTTTTTTTATATATGAATGGAAGAGAGCAATCAATTTTGTGAGACGTACAAGGAATAAAGTGATGATTTAAGTTTAGAATTATTTTTCCATTATTTTAAAGGTTTAAATGAAAGGAAAATGAAAAAATGTAGCCCCTTTGAAAATCATAACAACTCATGATTTCATCCAACCATTATTTCTCCATTATTTAAAAAGCTTTAAAATACACCTTTTTCTATAAAAGCAGGAACATCAAAGTCCAATAGGTAGTAGCATTACTACCCAGGGTTGGTTTGAATTCTCCCTCGAAAAAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAATTCGGGAAGGTGGTAATTAATGAGGAGTTGAATGGTTGTGGTGGGTAA

mRNA sequence

ATGAAAACCCCCAGAAACCACAAATTCAAGTACAGAGAAGGACAGAAAATCCCAAAAAGAAAAAGAACAGAAAACAGACACCCAGATGAAAGGGTTGGTTTGAATTCTCCCTCGAAAAAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAATTCGGGAAGGTGGTAATTAATGAGGAGTTGAATGGTTGTGGTGGGTAA

Coding sequence (CDS)

ATGAAAACCCCCAGAAACCACAAATTCAAGTACAGAGAAGGACAGAAAATCCCAAAAAGAAAAAGAACAGAAAACAGACACCCAGATGAAAGGGTTGGTTTGAATTCTCCCTCGAAAAAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAATTCGGGAAGGTGGTAATTAATGAGGAGTTGAATGGTTGTGGTGGGTAA

Protein sequence

MKTPRNHKFKYREGQKIPKRKRTENRHPDERVGLNSPSKKEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEFGKVVINEELNGCGG

Homology

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BLAST of Csor.00g238720.m01 vs. NCBI nr
Match: KAG6599864.1 (hypothetical protein SDJN03_05097, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 109 bits (273), Expect = 7.03e-28
Identity = 130/130 (100.00%), Postives = 130/130 (100.00%), Query Frame = 0


Query: 1   MKTPRNHKFKYREGQKIPKRKRTENRHPDERVGLNSPSKKEEEEEEEEEEEEEEEEEEEE 60
           MKTPRNHKFKYREGQKIPKRKRTENRHPDERVGLNSPSKKEEEEEEEEEEEEEEEEEEEE
Sbjct: 1   MKTPRNHKFKYREGQKIPKRKRTENRHPDERVGLNSPSKKEEEEEEEEEEEEEEEEEEEE 60

Query: 61  EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEFGKVV 120
           EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEFGKVV
Sbjct: 61  EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEFGKVV 120

Query: 121 INEELNGCGG 130
           INEELNGCGG
Sbjct: 121 INEELNGCGG 130

The following BLAST results are available for this feature:

BLAST of Csor.00g238720.m01 vs.


Match Name	E-value	Identity	Description

BLAST of Csor.00g238720.m01 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6599864.1	7.03e-28	100.00	hypothetical protein SDJN03_05097, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of Csor.00g238720.m01 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Csor.00g238720.m01 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 36..116
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..130
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 41..118
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..16
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 17..40

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Csor.00g238720	Csor.00g238720	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Csor.00g238720.m01.CDS01	Csor.00g238720.m01.CDS01	CDS
Csor.00g238720.m01.CDS02	Csor.00g238720.m01.CDS02	CDS

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Csor.00g238720.m01.start_codon01	Csor.00g238720.m01.start_codon01	start_codon

The following initial feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Csor.00g238720.m01.initial01	Csor.00g238720.m01.initial01	initial

The following intron feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Csor.00g238720.m01.intron01	Csor.00g238720.m01.intron01	intron

The following terminal feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Csor.00g238720.m01.terminal01	Csor.00g238720.m01.terminal01	terminal

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Csor.00g238720.m01.stop_codon01	Csor.00g238720.m01.stop_codon01	stop_codon

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Csor.00g238720.m01	Csor.00g238720.m01-protein	polypeptide