Csor.00g238720 (gene) Silver-seed gourd (wild; sororia) v1

Overview
NameCsor.00g238720
Typegene
OrganismCucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
DescriptionUnknown protein
LocationCsor_Chr04: 81146 .. 83737 (+)
RNA-Seq ExpressionCsor.00g238720
SyntenyCsor.00g238720
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSstart_codoninitialpolypeptideintronterminalstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAAACCCCCAGAAACCACAAATTCAAGTACAGAGAAGGACAGAAAATCCCAAAAAGAAAAAGAACAGAAAACAGACACCCAGATGAAAGGTTCGCAAGAAACTGAAATCCCATGAAGCAAAAATCGAGAAAAGAGAAGTAGGTTCTTACCATTTGTGGGCACAAAAATGGGATGTAGGGGTAGATGAAGTTGTAGAGGATTGAGAGTGAGTTTGTGGAGTAGAGTGGTGATGTAGTACTAGGAAAATGATACAGAGACGCACAGACAAGGTGATGGATGTAGTGCTACGAAAAGGAAATAGAGAAGCACAGACAAGGGGACATATGGTGACACCCAATTTGTTTCAATTTGTTTCAATTTGTTTCAATTTGTTTCAACTTTCAACTCATGGTGGTGGGGAAAAGGACTCGCAGATTAAACCAAAGGATAAATTATTCATGCAAGGTCTAAATATGGTGATAACTAAAGTTCTTACCTTTTTCCAAGTTCTGTTTTATGGGTCAACTTTTAGCTAGTTAGACTTTAAATTTGCACGTCTTTCTAAAATTACTACCATTATTTTCTCGAATAACATCTCTTAAATTCAATGAATTTGTAAAAGAAAAAAAAAGATTGAATTACTCTTTCCTTTAGCTTGTGACGTTAAATTGAGATAAACTATAGCAACCTCAATATTTAATTTCAACAAAATATATATATATATTTAGGTGATCTTCAAAAGGTTCAATTACTCGTTTTAATTGAATTGTTACACATAGCTTCAAAATCACTCTATTACTCTTATAACTAGATTTTAATAACACTGTAATTGCAATCTTAAAAATGGTAATGTTAGATTTTTTTTTTTTAAAAAAAAACATTGATAATATTTTTTTTAAAAAAAAATGAACTCATTTATAGCACTAAACTTTAGAGTCGTATTGGTGGAGAGAAAAAAAAAAAGTTTTAAAATGCAAGAGCAAAGACTCGAAGGGTGAATAATGAATTGAAAATAGGTGGGGAGTGGGGTTGGGTTGATGAGAGTACTATGGTGTCCTACGGGAAGAGAGTAAATGGCCATAAAAGGCACACAGACAGAGTACATGCATTGGTGCCTTTTTCTTTGTTTCTCTCCAATATTATGTGCATATCTTGTTACCAATCCAAAGTGGGGTACATAATTAGCAATAGGGATTCAGGCTTAGAGTGTTAAAGTAAGATGAGGTGAAGAACTCATTTTTGAAGGTGCCATGCTCGTACCCGAGTTCCGACTTGGAACTTGAGATACTTCCCGAGACTTACAACCGATGAATCCCTTGTTTACTCGTGGGAAACTCGGAGGCCAAAATGGAGCAACATTATGATCGTCTTCCATAAAAAAACGCAGAATAAGTAAGTGTTGGGTAGGACTGACGTGAGAATTGAGATTATTTTAGTGTCGGGGGTAGGTACAAAATCAAAAGAAGGAAACACATCCTCCCAGAATCAACTCATAAATAAATATCAGAGAGGGGAAATCATTACAAAACACAACTCCTCAATCAATTCCATATGTATTGCATAGAGGCTTGAGAGCAAATTTTGTAGAGGTTTGAGAGCAAATTTTGTAGAGGTTTGAGAGCAAATTTTGTAGAGGTTTGAGAGCGAGGTGAGGGTGTTGTAGTTGTAGGAAAGGGAAGGGAAATAGAGAACCAATTTGAATTTGTTCCAAGTCCAACTTTGTTGATGCCATTGTGGTGGGGAAGGGGGGAAGTGGGGCAATGGGGCAATGGGGCAATGGGGCAATGGGGCAATCATGAACGTGGAATTCTGATTGCCAATTCAATACAATGTGCAAACATTCATGAATGGGCTTCACCTTCACCCCGCCCAACACAGTTTTAAAACAATAACAAACTCTTGTGCCCATATTTCCCCATTGGGCCCAAATATCAATTTGGTCCTAACCCAATGTATTTTGGACCCTCATCTTTTATTTTAGGAAATCAGAATCAAATCAAAAGGAGACATAAAATGGAAAAAAAGTAAATGGGTAAACTATCTTTTTTTTTATATATGAATGGAAGAGAGCAATCAATTTTGTGAGACGTACAAGGAATAAAGTGATGATTTAAGTTTAGAATTATTTTTCCATTATTTTAAAGGTTTAAATGAAAGGAAAATGAAAAAATGTAGCCCCTTTGAAAATCATAACAACTCATGATTTCATCCAACCATTATTTCTCCATTATTTAAAAAGCTTTAAAATACACCTTTTTCTATAAAAGCAGGAACATCAAAGTCCAATAGGTAGTAGCATTACTACCCAGGGTTGGTTTGAATTCTCCCTCGAAAAAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAATTCGGGAAGGTGGTAATTAATGAGGAGTTGAATGGTTGTGGTGGGTAA

mRNA sequence

ATGAAAACCCCCAGAAACCACAAATTCAAGTACAGAGAAGGACAGAAAATCCCAAAAAGAAAAAGAACAGAAAACAGACACCCAGATGAAAGGGTTGGTTTGAATTCTCCCTCGAAAAAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAATTCGGGAAGGTGGTAATTAATGAGGAGTTGAATGGTTGTGGTGGGTAA

Coding sequence (CDS)

ATGAAAACCCCCAGAAACCACAAATTCAAGTACAGAGAAGGACAGAAAATCCCAAAAAGAAAAAGAACAGAAAACAGACACCCAGATGAAAGGGTTGGTTTGAATTCTCCCTCGAAAAAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAATTCGGGAAGGTGGTAATTAATGAGGAGTTGAATGGTTGTGGTGGGTAA

Protein sequence

MKTPRNHKFKYREGQKIPKRKRTENRHPDERVGLNSPSKKEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEFGKVVINEELNGCGG
Homology
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BLAST of Csor.00g238720 vs. NCBI nr
Match: KAG6599864.1 (hypothetical protein SDJN03_05097, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 109 bits (273), Expect = 7.03e-28
Identity = 130/130 (100.00%), Postives = 130/130 (100.00%), Query Frame = 0 

Query: 1   MKTPRNHKFKYREGQKIPKRKRTENRHPDERVGLNSPSKKEEEEEEEEEEEEEEEEEEEE 60
           MKTPRNHKFKYREGQKIPKRKRTENRHPDERVGLNSPSKKEEEEEEEEEEEEEEEEEEEE
Sbjct: 1   MKTPRNHKFKYREGQKIPKRKRTENRHPDERVGLNSPSKKEEEEEEEEEEEEEEEEEEEE 60

Query: 61  EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEFGKVV 120
           EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEFGKVV
Sbjct: 61  EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEFGKVV 120

Query: 121 INEELNGCGG 130
           INEELNGCGG
Sbjct: 121 INEELNGCGG 130

The following BLAST results are available for this feature:
BLAST of Csor.00g238720 vs.
Match NameE-valueIdentityDescription
BLAST of Csor.00g238720 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG6599864.17.03e-28100.00hypothetical protein SDJN03_05097, partial [Cucurbita argyrosperma subsp. sorori... [more]
BLAST of Csor.00g238720 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Csor.00g238720 vs. NCBI nr
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 36..116
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..130
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 41..118
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..16
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 17..40

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csor.00g238720.m01Csor.00g238720.m01mRNA