Csor.00g163580 (gene) Silver-seed gourd (wild; sororia) v1

Overview


Name	Csor.00g163580
Type	gene
Organism	Cucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Description	Unknown protein
Location	Csor_Chr13: 6328798 .. 6329366 (+)
RNA-Seq Expression	Csor.00g163580
Synteny	Csor.00g163580

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSinitialstart_codonpolypeptideintroninternalterminalstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTTGGAGTTCGAAGGCTGCAGCAATTCTCTGGATATGAATTTTTTCTTCTTCAAATGTAACCGGAGACGATGTAGTCCATCAGGAATTTTCTTTTGTAGTTGCACGCTCTACTAAGGGGCACATGTAAACCTGATTATAATATTTAAGATTCTCTCTTCGGAAGTCTATACTGCTTAGAAATGGAGGAAATGAGAAGAATTGCATAATTTTCATTGCAATTGTCAGACAGGCACATCCTCAAATCAAACGGGTGCTGGTCGTCTGTAAGGTTAGTGGTTGTTGCTTTTCTGGTGAAGGGTACACACTTCATGATTAAATTTTCATTTTGGCTAAGAACACCATGTGTTCTTTTCGCATGTCAGTTACTGTTTTGTAATGTTCTATTTCGTAGAAAGGGTTTCTGATTGAAAAGGATTTTTGTCAGTGTTATTCCTATTATATTATTCCTCATATGGAAACGCTCTCTTCAAAGGATATCTGCAGGTACTAATAGGTAGATTTGCAGGCTACAAAGGATATCTATCTAGAGCTCAAGAGTAAGCTTGTTCGAGCTTTTTTGGGCTGA

mRNA sequence

ATGGTTGGAGTTCGAAGGCTGCAGCAATTCTCTGGATATGAATTTTTTCTTCTTCAAATAAATGGAGGAAATGAGAAGAATTGCATAATTTTCATTGCAATTGTCAGACAGGCACATCCTCAAATCAAACGGGTGCTGGTCGTCTGTAAGGCTACAAAGGATATCTATCTAGAGCTCAAGAGTAAGCTTGTTCGAGCTTTTTTGGGCTGA

Coding sequence (CDS)

ATGGTTGGAGTTCGAAGGCTGCAGCAATTCTCTGGATATGAATTTTTTCTTCTTCAAATAAATGGAGGAAATGAGAAGAATTGCATAATTTTCATTGCAATTGTCAGACAGGCACATCCTCAAATCAAACGGGTGCTGGTCGTCTGTAAGGCTACAAAGGATATCTATCTAGAGCTCAAGAGTAAGCTTGTTCGAGCTTTTTTGGGCTGA

Protein sequence

MVGVRRLQQFSGYEFFLLQINGGNEKNCIIFIAIVRQAHPQIKRVLVVCKATKDIYLELKSKLVRAFLG

Homology

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BLAST of Csor.00g163580 vs. NCBI nr
Match: KAG6583689.1 (hypothetical protein SDJN03_19621, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 135 bits (340), Expect = 6.77e-40
Identity = 69/69 (100.00%), Postives = 69/69 (100.00%), Query Frame = 0


Query: 1  MVGVRRLQQFSGYEFFLLQINGGNEKNCIIFIAIVRQAHPQIKRVLVVCKATKDIYLELK 60
          MVGVRRLQQFSGYEFFLLQINGGNEKNCIIFIAIVRQAHPQIKRVLVVCKATKDIYLELK
Sbjct: 1  MVGVRRLQQFSGYEFFLLQINGGNEKNCIIFIAIVRQAHPQIKRVLVVCKATKDIYLELK 60

Query: 61 SKLVRAFLG 69
          SKLVRAFLG
Sbjct: 61 SKLVRAFLG 69

The following BLAST results are available for this feature:

BLAST of Csor.00g163580 vs.


Match Name	E-value	Identity	Description

BLAST of Csor.00g163580 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6583689.1	6.77e-40	100.00	hypothetical protein SDJN03_19621, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of Csor.00g163580 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Csor.00g163580 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csor.00g163580.m01	Csor.00g163580.m01	mRNA