Sequences
The following sequences are available for this feature:
Gene sequence (with intron) Legend: CDSinitialstart_codonpolypeptideintroninternalterminalstop_codon Hold the cursor over a type above to highlight its positions in the sequence below. ATGGTTGGAGTTCGAAGGCTGCAGCAATTCTCTGGATATGAATTTTTTCTTCTTCAAATGTAACCGGAGACGATGTAGTCCATCAGGAATTTTCTTTTGTAGTTGCACGCTCTACTAAGGGGCACATGTAAACCTGATTATAATATTTAAGATTCTCTCTTCGGAAGTCTATACTGCTTAGAAATGGAGGAAATGAGAAGAATTGCATAATTTTCATTGCAATTGTCAGACAGGCACATCCTCAAATCAAACGGGTGCTGGTCGTCTGTAAGGTTAGTGGTTGTTGCTTTTCTGGTGAAGGGTACACACTTCATGATTAAATTTTCATTTTGGCTAAGAACACCATGTGTTCTTTTCGCATGTCAGTTACTGTTTTGTAATGTTCTATTTCGTAGAAAGGGTTTCTGATTGAAAAGGATTTTTGTCAGTGTTATTCCTATTATATTATTCCTCATATGGAAACGCTCTCTTCAAAGGATATCTGCAGGTACTAATAGGTAGATTTGCAGGCTACAAAGGATATCTATCTAGAGCTCAAGAGTAAGCTTGTTCGAGCTTTTTTGGGCTGA mRNA sequence ATGGTTGGAGTTCGAAGGCTGCAGCAATTCTCTGGATATGAATTTTTTCTTCTTCAAATAAATGGAGGAAATGAGAAGAATTGCATAATTTTCATTGCAATTGTCAGACAGGCACATCCTCAAATCAAACGGGTGCTGGTCGTCTGTAAGGCTACAAAGGATATCTATCTAGAGCTCAAGAGTAAGCTTGTTCGAGCTTTTTTGGGCTGA Coding sequence (CDS) ATGGTTGGAGTTCGAAGGCTGCAGCAATTCTCTGGATATGAATTTTTTCTTCTTCAAATAAATGGAGGAAATGAGAAGAATTGCATAATTTTCATTGCAATTGTCAGACAGGCACATCCTCAAATCAAACGGGTGCTGGTCGTCTGTAAGGCTACAAAGGATATCTATCTAGAGCTCAAGAGTAAGCTTGTTCGAGCTTTTTTGGGCTGA Protein sequence MVGVRRLQQFSGYEFFLLQINGGNEKNCIIFIAIVRQAHPQIKRVLVVCKATKDIYLELKSKLVRAFLG
Homology
BLAST of Csor.00g163580.m01 vs. NCBI nr
Match: KAG6583689.1 (hypothetical protein SDJN03_19621, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 135 bits (340), Expect = 6.77e-40 Identity = 69/69 (100.00%), Postives = 69/69 (100.00%), Query Frame = 0
Query: 1 MVGVRRLQQFSGYEFFLLQINGGNEKNCIIFIAIVRQAHPQIKRVLVVCKATKDIYLELK 60
MVGVRRLQQFSGYEFFLLQINGGNEKNCIIFIAIVRQAHPQIKRVLVVCKATKDIYLELK
Sbjct: 1 MVGVRRLQQFSGYEFFLLQINGGNEKNCIIFIAIVRQAHPQIKRVLVVCKATKDIYLELK 60
Query: 61 SKLVRAFLG 69
SKLVRAFLG
Sbjct: 61 SKLVRAFLG 69
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| Match Name | E-value | Identity | Description | |
|---|
| KAG6583689.1 | 6.77e-40 | 100.00 | hypothetical protein SDJN03_19621, partial [Cucurbita argyrosperma subsp. sorori... | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| Match Name | E-value | Identity | Description | |
|---|
Relationships
This mRNA is a part of the following gene feature(s):
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Type |
|---|
| Csor.00g163580.m01.CDS03 | Csor.00g163580.m01.CDS03 | CDS |
| Csor.00g163580.m01.CDS02 | Csor.00g163580.m01.CDS02 | CDS |
| Csor.00g163580.m01.CDS01 | Csor.00g163580.m01.CDS01 | CDS |
The following initial feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Type |
|---|
| Csor.00g163580.m01.initial01 | Csor.00g163580.m01.initial01 | initial |
The following start_codon feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Type |
|---|
| Csor.00g163580.m01.start_codon01 | Csor.00g163580.m01.start_codon01 | start_codon |
The following intron feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Type |
|---|
| Csor.00g163580.m01.intron02 | Csor.00g163580.m01.intron02 | intron |
| Csor.00g163580.m01.intron01 | Csor.00g163580.m01.intron01 | intron |
The following internal feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Type |
|---|
| Csor.00g163580.m01.internal01 | Csor.00g163580.m01.internal01 | internal |
The following terminal feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Type |
|---|
| Csor.00g163580.m01.terminal01 | Csor.00g163580.m01.terminal01 | terminal |
The following stop_codon feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Type |
|---|
| Csor.00g163580.m01.stop_codon01 | Csor.00g163580.m01.stop_codon01 | stop_codon |
The following polypeptide feature(s) derives from this mRNA:
| Feature Name | Unique Name | Type |
|---|
| Csor.00g163580.m01 | Csor.00g163580.m01-protein | polypeptide |
|
