Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: CDSstart_codonsinglepolypeptidestop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCTCAAGGCCGCCAAGAAGAAACTCAAATTCTGGTCCAGATCCAAGAAGCGGAAGAAAATCCCCGATCCCAACGATTTCACTCCGCCGCCGCCGCCGCCCTGCCACTGCTGCACTTGCCACTGCTCCTCCGCAATCCAGCCCTCAGCTCCGCCACTTCCCCCATGGCTAGACGATCGGATCTTTCCGCCACCGGAACATCCCGAGGAAGCAGAAATCGCAGCGCCGCTTGTGGCCGCTCCGCTGTACCAGCAATACATGGATCCGGATCCGGTGTACGGAGTGCCGATCATCGTGCAAACAGATAGCAGAAGAGATGGATCGAGATCGAGAAGGTTCGCGGTTTCCGGATGTGTCGGTGATTTGGGGATCAGAATAATTGGATGCTTCTGTCCCTGTTTTCGCACTCCAAAAGCATAG
mRNA sequence
ATGCTCAAGGCCGCCAAGAAGAAACTCAAATTCTGGTCCAGATCCAAGAAGCGGAAGAAAATCCCCGATCCCAACGATTTCACTCCGCCGCCGCCGCCGCCCTGCCACTGCTGCACTTGCCACTGCTCCTCCGCAATCCAGCCCTCAGCTCCGCCACTTCCCCCATGGCTAGACGATCGGATCTTTCCGCCACCGGAACATCCCGAGGAAGCAGAAATCGCAGCGCCGCTTGTGGCCGCTCCGCTGTACCAGCAATACATGGATCCGGATCCGGTGTACGGAGTGCCGATCATCGTGCAAACAGATAGCAGAAGAGATGGATCGAGATCGAGAAGGTTCGCGGTTTCCGGATGTGTCGGTGATTTGGGGATCAGAATAATTGGATGCTTCTGTCCCTGTTTTCGCACTCCAAAAGCATAG
Coding sequence (CDS)
ATGCTCAAGGCCGCCAAGAAGAAACTCAAATTCTGGTCCAGATCCAAGAAGCGGAAGAAAATCCCCGATCCCAACGATTTCACTCCGCCGCCGCCGCCGCCCTGCCACTGCTGCACTTGCCACTGCTCCTCCGCAATCCAGCCCTCAGCTCCGCCACTTCCCCCATGGCTAGACGATCGGATCTTTCCGCCACCGGAACATCCCGAGGAAGCAGAAATCGCAGCGCCGCTTGTGGCCGCTCCGCTGTACCAGCAATACATGGATCCGGATCCGGTGTACGGAGTGCCGATCATCGTGCAAACAGATAGCAGAAGAGATGGATCGAGATCGAGAAGGTTCGCGGTTTCCGGATGTGTCGGTGATTTGGGGATCAGAATAATTGGATGCTTCTGTCCCTGTTTTCGCACTCCAAAAGCATAG
Protein sequence
MLKAAKKKLKFWSRSKKRKKIPDPNDFTPPPPPPCHCCTCHCSSAIQPSAPPLPPWLDDRIFPPPEHPEEAEIAAPLVAAPLYQQYMDPDPVYGVPIIVQTDSRRDGSRSRRFAVSGCVGDLGIRIIGCFCPCFRTPKA
Homology
BLAST of Csor.00g043240 vs. NCBI nr
Match:
KAG6601672.1 (hypothetical protein SDJN03_06905, partial [Cucurbita argyrosperma subsp. sororia])
HSP 1 Score: 293 bits (750), Expect = 3.13e-100
Identity = 139/139 (100.00%), Postives = 139/139 (100.00%), Query Frame = 0
Query: 1 MLKAAKKKLKFWSRSKKRKKIPDPNDFTPPPPPPCHCCTCHCSSAIQPSAPPLPPWLDDR 60
MLKAAKKKLKFWSRSKKRKKIPDPNDFTPPPPPPCHCCTCHCSSAIQPSAPPLPPWLDDR
Sbjct: 1 MLKAAKKKLKFWSRSKKRKKIPDPNDFTPPPPPPCHCCTCHCSSAIQPSAPPLPPWLDDR 60
Query: 61 IFPPPEHPEEAEIAAPLVAAPLYQQYMDPDPVYGVPIIVQTDSRRDGSRSRRFAVSGCVG 120
IFPPPEHPEEAEIAAPLVAAPLYQQYMDPDPVYGVPIIVQTDSRRDGSRSRRFAVSGCVG
Sbjct: 61 IFPPPEHPEEAEIAAPLVAAPLYQQYMDPDPVYGVPIIVQTDSRRDGSRSRRFAVSGCVG 120
Query: 121 DLGIRIIGCFCPCFRTPKA 139
DLGIRIIGCFCPCFRTPKA
Sbjct: 121 DLGIRIIGCFCPCFRTPKA 139
BLAST of Csor.00g043240 vs. NCBI nr
Match:
XP_022933064.1 (uncharacterized protein LOC111439771 [Cucurbita moschata])
HSP 1 Score: 269 bits (687), Expect = 1.12e-90
Identity = 130/139 (93.53%), Postives = 133/139 (95.68%), Query Frame = 0
Query: 1 MLKAAKKKLKFWSRSKKRKKIPDPNDFTPPPPPPCHCCTCHCSSAIQPSAPPLPPWLDDR 60
MLKAAKKKLKFWSRSKKRKKIP+PNDF PPPCHCCTCHCSSAIQPSAPPLPPWLDDR
Sbjct: 1 MLKAAKKKLKFWSRSKKRKKIPNPNDF----PPPCHCCTCHCSSAIQPSAPPLPPWLDDR 60
Query: 61 IFPPPEHPEEAEIAAPLVAAPLYQQYMDPDPVYGVPIIVQTDSRRDGSRSRRFAVSGCVG 120
IFPP EHPEEAEIAAPLVAAPLYQ YMDPDPVYGVPIIVQTDSRRDGSRSRRFAVSGCVG
Sbjct: 61 IFPPSEHPEEAEIAAPLVAAPLYQHYMDPDPVYGVPIIVQTDSRRDGSRSRRFAVSGCVG 120
Query: 121 DLGIRIIGCFCPCFRTPKA 139
+LGIRIIGCFCPCFRTP+A
Sbjct: 121 ELGIRIIGCFCPCFRTPEA 135
BLAST of Csor.00g043240 vs. NCBI nr
Match:
XP_022155153.1 (uncharacterized protein LOC111022295 [Momordica charantia])
HSP 1 Score: 112 bits (280), Expect = 8.72e-29
Identity = 74/140 (52.86%), Postives = 86/140 (61.43%), Query Frame = 0
Query: 1 MLKAAKKKLKFWSRSKKRKKIPDPNDFTPPPPPPCHCCTCHCS-SAIQPSAPPLPPWLDD 60
MLKAA KKLKFWS+ KKR+K D + + PPPPPP C+C CS SAI+PSAPPLPPWLDD
Sbjct: 1 MLKAA-KKLKFWSKDKKRRKTRD-SSYLPPPPPPY--CSCSCSYSAIRPSAPPLPPWLDD 60
Query: 61 RIFPPPEHPEEAEIAAPLVAAPLYQQYMDPDPVYGVPIIVQTDSRRDGSRSRRFAVSGCV 120
R E A + AA YQQY P+PVYG+PI V+ S R RS
Sbjct: 61 RTL---LLQSEPPAATGVEAAASYQQYTAPNPVYGLPI-VEMGSIRTRERSL-------F 120
Query: 121 GDLGIRIIGCFCPCFRTPKA 139
DLG R+I CFCPC +A
Sbjct: 121 TDLGARLIRCFCPCLHVREA 125
BLAST of Csor.00g043240 vs. NCBI nr
Match:
KAE8007888.1 (hypothetical protein FH972_004447 [Carpinus fangiana])
HSP 1 Score: 108 bits (269), Expect = 9.83e-27
Identity = 70/169 (41.42%), Postives = 90/169 (53.25%), Query Frame = 0
Query: 1 MLKAAKKKLKFWSRSKKRKKIPDPNDFTPPPPPPCHCCTCHCSSAIQPSAPPLPPWLD-- 60
M+KA KKLKFWSR K++KK DP PPPPCHC H + QPSAPPLPPWLD
Sbjct: 3 MMKAV-KKLKFWSRKKRKKKTQDPYYL---PPPPCHCY--HSCYSTQPSAPPLPPWLDLE 62
Query: 61 ---DRIFPPP--------EHPEEAEI---------AAPL---------VAAPLYQQYMDP 120
D+ P P +P +A + +P+ V+ P YQQYM P
Sbjct: 63 QTHDQAIPEPALQPVPDLSYPNQARVPSIQEVVTETSPIMYPTLPDAAVSTPSYQQYMAP 122
Query: 121 DPVYGVPIIVQTDSRRDGSRSRRFAVSGCVGDLGIRIIGCFCPCFRTPK 138
+PVYG+P++V +RR+ RR GCV + GI + CFCPC +
Sbjct: 123 NPVYGIPVVVGETARRE----RRAGFFGCVVNFGIHLFRCFCPCLSIRE 161
BLAST of Csor.00g043240 vs. NCBI nr
Match:
XP_034198616.1 (E1A-binding protein p400 [Prunus dulcis] >VVA26904.1 PREDICTED: leucine-rich repeat extensin [Prunus dulcis])
HSP 1 Score: 108 bits (270), Expect = 2.78e-26
Identity = 78/181 (43.09%), Postives = 94/181 (51.93%), Query Frame = 0
Query: 1 MLKAAKKKLKFWSRSKKRKKIPDPNDFTPPPPP--PC--------HCCTCHCSS-AIQPS 60
M+KA KKLKFWSR K++KK + PPPPP P HCC+C S+ + QPS
Sbjct: 39 MIKAV-KKLKFWSRKKRKKKTHHHQPYYPPPPPTRPAPLPPGPRHHCCSCSSSTYSTQPS 98
Query: 61 APPLPPWLD----------DRIFPPPEHPEEAE------------------IAAPLVAAP 120
APPLPPWLD ++ P PE +A+ ++PL P
Sbjct: 99 APPLPPWLDAEYTHEALLAPQVQPAPEFGYQADPRQQEPTMKTNADSGTTSTSSPLYLYP 158
Query: 121 L--YQQYMDPDPVYGVPIIVQTDSRRDGSRSRRFA--VSGCVGDLGIRIIGCFCPCFRTP 138
YQQYM PDPVYGVP+ QT + R +R R A V GCV D GIR CFCPCF
Sbjct: 159 TSSYQQYMVPDPVYGVPV-AQTQTPRATTRERSAAGGVFGCVVDFGIRFFRCFCPCFHIE 217
BLAST of Csor.00g043240 vs. ExPASy TrEMBL
Match:
A0A6J1EYP6 (uncharacterized protein LOC111439771 OS=Cucurbita moschata OX=3662 GN=LOC111439771 PE=4 SV=1)
HSP 1 Score: 269 bits (687), Expect = 5.40e-91
Identity = 130/139 (93.53%), Postives = 133/139 (95.68%), Query Frame = 0
Query: 1 MLKAAKKKLKFWSRSKKRKKIPDPNDFTPPPPPPCHCCTCHCSSAIQPSAPPLPPWLDDR 60
MLKAAKKKLKFWSRSKKRKKIP+PNDF PPPCHCCTCHCSSAIQPSAPPLPPWLDDR
Sbjct: 1 MLKAAKKKLKFWSRSKKRKKIPNPNDF----PPPCHCCTCHCSSAIQPSAPPLPPWLDDR 60
Query: 61 IFPPPEHPEEAEIAAPLVAAPLYQQYMDPDPVYGVPIIVQTDSRRDGSRSRRFAVSGCVG 120
IFPP EHPEEAEIAAPLVAAPLYQ YMDPDPVYGVPIIVQTDSRRDGSRSRRFAVSGCVG
Sbjct: 61 IFPPSEHPEEAEIAAPLVAAPLYQHYMDPDPVYGVPIIVQTDSRRDGSRSRRFAVSGCVG 120
Query: 121 DLGIRIIGCFCPCFRTPKA 139
+LGIRIIGCFCPCFRTP+A
Sbjct: 121 ELGIRIIGCFCPCFRTPEA 135
BLAST of Csor.00g043240 vs. ExPASy TrEMBL
Match:
A0A6J1DM77 (uncharacterized protein LOC111022295 OS=Momordica charantia OX=3673 GN=LOC111022295 PE=4 SV=1)
HSP 1 Score: 112 bits (280), Expect = 4.22e-29
Identity = 74/140 (52.86%), Postives = 86/140 (61.43%), Query Frame = 0
Query: 1 MLKAAKKKLKFWSRSKKRKKIPDPNDFTPPPPPPCHCCTCHCS-SAIQPSAPPLPPWLDD 60
MLKAA KKLKFWS+ KKR+K D + + PPPPPP C+C CS SAI+PSAPPLPPWLDD
Sbjct: 1 MLKAA-KKLKFWSKDKKRRKTRD-SSYLPPPPPPY--CSCSCSYSAIRPSAPPLPPWLDD 60
Query: 61 RIFPPPEHPEEAEIAAPLVAAPLYQQYMDPDPVYGVPIIVQTDSRRDGSRSRRFAVSGCV 120
R E A + AA YQQY P+PVYG+PI V+ S R RS
Sbjct: 61 RTL---LLQSEPPAATGVEAAASYQQYTAPNPVYGLPI-VEMGSIRTRERSL-------F 120
Query: 121 GDLGIRIIGCFCPCFRTPKA 139
DLG R+I CFCPC +A
Sbjct: 121 TDLGARLIRCFCPCLHVREA 125
BLAST of Csor.00g043240 vs. ExPASy TrEMBL
Match:
A0A5N6QN08 (Uncharacterized protein OS=Carpinus fangiana OX=176857 GN=FH972_004447 PE=4 SV=1)
HSP 1 Score: 108 bits (269), Expect = 4.76e-27
Identity = 70/169 (41.42%), Postives = 90/169 (53.25%), Query Frame = 0
Query: 1 MLKAAKKKLKFWSRSKKRKKIPDPNDFTPPPPPPCHCCTCHCSSAIQPSAPPLPPWLD-- 60
M+KA KKLKFWSR K++KK DP PPPPCHC H + QPSAPPLPPWLD
Sbjct: 3 MMKAV-KKLKFWSRKKRKKKTQDPYYL---PPPPCHCY--HSCYSTQPSAPPLPPWLDLE 62
Query: 61 ---DRIFPPP--------EHPEEAEI---------AAPL---------VAAPLYQQYMDP 120
D+ P P +P +A + +P+ V+ P YQQYM P
Sbjct: 63 QTHDQAIPEPALQPVPDLSYPNQARVPSIQEVVTETSPIMYPTLPDAAVSTPSYQQYMAP 122
Query: 121 DPVYGVPIIVQTDSRRDGSRSRRFAVSGCVGDLGIRIIGCFCPCFRTPK 138
+PVYG+P++V +RR+ RR GCV + GI + CFCPC +
Sbjct: 123 NPVYGIPVVVGETARRE----RRAGFFGCVVNFGIHLFRCFCPCLSIRE 161
BLAST of Csor.00g043240 vs. ExPASy TrEMBL
Match:
A0A5E4FFI2 (PREDICTED: leucine-rich repeat extensin OS=Prunus dulcis OX=3755 GN=ALMOND_2B000460 PE=4 SV=1)
HSP 1 Score: 108 bits (270), Expect = 1.35e-26
Identity = 78/181 (43.09%), Postives = 94/181 (51.93%), Query Frame = 0
Query: 1 MLKAAKKKLKFWSRSKKRKKIPDPNDFTPPPPP--PC--------HCCTCHCSS-AIQPS 60
M+KA KKLKFWSR K++KK + PPPPP P HCC+C S+ + QPS
Sbjct: 39 MIKAV-KKLKFWSRKKRKKKTHHHQPYYPPPPPTRPAPLPPGPRHHCCSCSSSTYSTQPS 98
Query: 61 APPLPPWLD----------DRIFPPPEHPEEAE------------------IAAPLVAAP 120
APPLPPWLD ++ P PE +A+ ++PL P
Sbjct: 99 APPLPPWLDAEYTHEALLAPQVQPAPEFGYQADPRQQEPTMKTNADSGTTSTSSPLYLYP 158
Query: 121 L--YQQYMDPDPVYGVPIIVQTDSRRDGSRSRRFA--VSGCVGDLGIRIIGCFCPCFRTP 138
YQQYM PDPVYGVP+ QT + R +R R A V GCV D GIR CFCPCF
Sbjct: 159 TSSYQQYMVPDPVYGVPV-AQTQTPRATTRERSAAGGVFGCVVDFGIRFFRCFCPCFHIE 217
BLAST of Csor.00g043240 vs. ExPASy TrEMBL
Match:
A0A251RP50 (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_1G585100 PE=4 SV=1)
HSP 1 Score: 106 bits (265), Expect = 3.41e-26
Identity = 79/186 (42.47%), Postives = 94/186 (50.54%), Query Frame = 0
Query: 1 MLKAAKKKLKFWSRSKKRKKIPDPNDFTPPPPP--PC--------HCCTCHCSS-AIQPS 60
M+KA KKLKFWSR K++KK + PPPPP P HCC+C S+ + QPS
Sbjct: 1 MIKAV-KKLKFWSRKKRKKKTLHHQPYYPPPPPTRPAPLPPGPRHHCCSCSSSTYSTQPS 60
Query: 61 APPLPPWLD----------DRIFPPPEHPEEAE------------------IAAPLVAAP 120
APPLPPWLD ++ P PE +A+ ++PL P
Sbjct: 61 APPLPPWLDAEYTHEALLAPQVQPAPEFGYQADPRQQEPTMKTNADSGTTSTSSPLYLYP 120
Query: 121 L--YQQYMDPDPVYGVPII-----VQTDSRRDGSRSRRFA--VSGCVGDLGIRIIGCFCP 138
YQQYM PDPVYGVPI QT + R +R R A V GCV D GIR CFCP
Sbjct: 121 TSSYQQYMVPDPVYGVPIAQTQTQTQTQTPRATTRERSAAGGVFGCVVDFGIRFFRCFCP 180
BLAST of Csor.00g043240 vs. TAIR 10
Match:
AT4G24265.1 (unknown protein; Has 3 Blast hits to 3 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 3; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )
HSP 1 Score: 58.9 bits (141), Expect = 3.7e-09
Identity = 49/152 (32.24%), Postives = 70/152 (46.05%), Query Frame = 0
Query: 7 KKLKFWSRSKKRKKIPDPNDFTPPPPPPCHCCTCHCSSA----IQPSAPPLPPWLDD-RI 66
KKL FWSR K+++K P+ P HC + S+A ++P+APPLP W D+ R
Sbjct: 2 KKLTFWSRKKRKRKQACPSQ-------PHHCSCEYSSTAVAVLVEPTAPPLPYWFDETRS 61
Query: 67 FPPPE------------HPEEAEI--AAPLVAA-------PLYQQYMDPDPVYGVPIIVQ 126
PPE H +E I A PL++ YQQYM P+P V +
Sbjct: 62 LCPPETSSFPWTTHHLPHQQEETIVEATPLLSQVSDLRIYQSYQQYMVPNPTSNVHFVEP 121
Query: 127 TDSRRDGSRSRRFAVSGCVGDLGIRIIGCFCP 133
++R + GCV +L ++ CF P
Sbjct: 122 ATAKRS------VGIFGCVIELSSSLVRCFIP 140
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| Match Name | E-value | Identity | Description | |
|---|
| KAG6601672.1 | 3.13e-100 | 100.00 | hypothetical protein SDJN03_06905, partial [Cucurbita argyrosperma subsp. sorori... | [more] |
| XP_022933064.1 | 1.12e-90 | 93.53 | uncharacterized protein LOC111439771 [Cucurbita moschata] | [more] |
| XP_022155153.1 | 8.72e-29 | 52.86 | uncharacterized protein LOC111022295 [Momordica charantia] | [more] |
| KAE8007888.1 | 9.83e-27 | 41.42 | hypothetical protein FH972_004447 [Carpinus fangiana] | [more] |
| XP_034198616.1 | 2.78e-26 | 43.09 | E1A-binding protein p400 [Prunus dulcis] >VVA26904.1 PREDICTED: leucine-rich rep... | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| A0A6J1EYP6 | 5.40e-91 | 93.53 | uncharacterized protein LOC111439771 OS=Cucurbita moschata OX=3662 GN=LOC1114397... | [more] |
| A0A6J1DM77 | 4.22e-29 | 52.86 | uncharacterized protein LOC111022295 OS=Momordica charantia OX=3673 GN=LOC111022... | [more] |
| A0A5N6QN08 | 4.76e-27 | 41.42 | Uncharacterized protein OS=Carpinus fangiana OX=176857 GN=FH972_004447 PE=4 SV=1 | [more] |
| A0A5E4FFI2 | 1.35e-26 | 43.09 | PREDICTED: leucine-rich repeat extensin OS=Prunus dulcis OX=3755 GN=ALMOND_2B000... | [more] |
| A0A251RP50 | 3.41e-26 | 42.47 | Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_1G585100 PE=4 SV=1 | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| AT4G24265.1 | 3.7e-09 | 32.24 | unknown protein; Has 3 Blast hits to 3 proteins in 2 species: Archae - 0; Bacter... | [more] |
