Csor.00g043240.m01 (mRNA) Silver-seed gourd (wild; sororia) v1

Overview


Name	Csor.00g043240.m01
Type	mRNA
Organism	Cucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Description	Leucine-rich repeat extensin-like protein 2
Location	Csor_Chr04: 10214717 .. 10215136 (+)
Sequence length	420
RNA-Seq Expression	Csor.00g043240.m01
Synteny	Csor.00g043240.m01

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSstart_codonsinglepolypeptidestop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCTCAAGGCCGCCAAGAAGAAACTCAAATTCTGGTCCAGATCCAAGAAGCGGAAGAAAATCCCCGATCCCAACGATTTCACTCCGCCGCCGCCGCCGCCCTGCCACTGCTGCACTTGCCACTGCTCCTCCGCAATCCAGCCCTCAGCTCCGCCACTTCCCCCATGGCTAGACGATCGGATCTTTCCGCCACCGGAACATCCCGAGGAAGCAGAAATCGCAGCGCCGCTTGTGGCCGCTCCGCTGTACCAGCAATACATGGATCCGGATCCGGTGTACGGAGTGCCGATCATCGTGCAAACAGATAGCAGAAGAGATGGATCGAGATCGAGAAGGTTCGCGGTTTCCGGATGTGTCGGTGATTTGGGGATCAGAATAATTGGATGCTTCTGTCCCTGTTTTCGCACTCCAAAAGCATAG

mRNA sequence

ATGCTCAAGGCCGCCAAGAAGAAACTCAAATTCTGGTCCAGATCCAAGAAGCGGAAGAAAATCCCCGATCCCAACGATTTCACTCCGCCGCCGCCGCCGCCCTGCCACTGCTGCACTTGCCACTGCTCCTCCGCAATCCAGCCCTCAGCTCCGCCACTTCCCCCATGGCTAGACGATCGGATCTTTCCGCCACCGGAACATCCCGAGGAAGCAGAAATCGCAGCGCCGCTTGTGGCCGCTCCGCTGTACCAGCAATACATGGATCCGGATCCGGTGTACGGAGTGCCGATCATCGTGCAAACAGATAGCAGAAGAGATGGATCGAGATCGAGAAGGTTCGCGGTTTCCGGATGTGTCGGTGATTTGGGGATCAGAATAATTGGATGCTTCTGTCCCTGTTTTCGCACTCCAAAAGCATAG

Coding sequence (CDS)

ATGCTCAAGGCCGCCAAGAAGAAACTCAAATTCTGGTCCAGATCCAAGAAGCGGAAGAAAATCCCCGATCCCAACGATTTCACTCCGCCGCCGCCGCCGCCCTGCCACTGCTGCACTTGCCACTGCTCCTCCGCAATCCAGCCCTCAGCTCCGCCACTTCCCCCATGGCTAGACGATCGGATCTTTCCGCCACCGGAACATCCCGAGGAAGCAGAAATCGCAGCGCCGCTTGTGGCCGCTCCGCTGTACCAGCAATACATGGATCCGGATCCGGTGTACGGAGTGCCGATCATCGTGCAAACAGATAGCAGAAGAGATGGATCGAGATCGAGAAGGTTCGCGGTTTCCGGATGTGTCGGTGATTTGGGGATCAGAATAATTGGATGCTTCTGTCCCTGTTTTCGCACTCCAAAAGCATAG

Protein sequence

MLKAAKKKLKFWSRSKKRKKIPDPNDFTPPPPPPCHCCTCHCSSAIQPSAPPLPPWLDDRIFPPPEHPEEAEIAAPLVAAPLYQQYMDPDPVYGVPIIVQTDSRRDGSRSRRFAVSGCVGDLGIRIIGCFCPCFRTPKA

Homology

[Close]

BLAST of Csor.00g043240.m01 vs. NCBI nr
Match: KAG6601672.1 (hypothetical protein SDJN03_06905, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 293 bits (750), Expect = 3.13e-100
Identity = 139/139 (100.00%), Postives = 139/139 (100.00%), Query Frame = 0


Query: 1   MLKAAKKKLKFWSRSKKRKKIPDPNDFTPPPPPPCHCCTCHCSSAIQPSAPPLPPWLDDR 60
           MLKAAKKKLKFWSRSKKRKKIPDPNDFTPPPPPPCHCCTCHCSSAIQPSAPPLPPWLDDR
Sbjct: 1   MLKAAKKKLKFWSRSKKRKKIPDPNDFTPPPPPPCHCCTCHCSSAIQPSAPPLPPWLDDR 60

Query: 61  IFPPPEHPEEAEIAAPLVAAPLYQQYMDPDPVYGVPIIVQTDSRRDGSRSRRFAVSGCVG 120
           IFPPPEHPEEAEIAAPLVAAPLYQQYMDPDPVYGVPIIVQTDSRRDGSRSRRFAVSGCVG
Sbjct: 61  IFPPPEHPEEAEIAAPLVAAPLYQQYMDPDPVYGVPIIVQTDSRRDGSRSRRFAVSGCVG 120

Query: 121 DLGIRIIGCFCPCFRTPKA 139
           DLGIRIIGCFCPCFRTPKA
Sbjct: 121 DLGIRIIGCFCPCFRTPKA 139

[Close]

BLAST of Csor.00g043240.m01 vs. NCBI nr
Match: XP_022933064.1 (uncharacterized protein LOC111439771 [Cucurbita moschata])

HSP 1 Score: 269 bits (687), Expect = 1.12e-90
Identity = 130/139 (93.53%), Postives = 133/139 (95.68%), Query Frame = 0


Query: 1   MLKAAKKKLKFWSRSKKRKKIPDPNDFTPPPPPPCHCCTCHCSSAIQPSAPPLPPWLDDR 60
           MLKAAKKKLKFWSRSKKRKKIP+PNDF    PPPCHCCTCHCSSAIQPSAPPLPPWLDDR
Sbjct: 1   MLKAAKKKLKFWSRSKKRKKIPNPNDF----PPPCHCCTCHCSSAIQPSAPPLPPWLDDR 60

Query: 61  IFPPPEHPEEAEIAAPLVAAPLYQQYMDPDPVYGVPIIVQTDSRRDGSRSRRFAVSGCVG 120
           IFPP EHPEEAEIAAPLVAAPLYQ YMDPDPVYGVPIIVQTDSRRDGSRSRRFAVSGCVG
Sbjct: 61  IFPPSEHPEEAEIAAPLVAAPLYQHYMDPDPVYGVPIIVQTDSRRDGSRSRRFAVSGCVG 120

Query: 121 DLGIRIIGCFCPCFRTPKA 139
           +LGIRIIGCFCPCFRTP+A
Sbjct: 121 ELGIRIIGCFCPCFRTPEA 135

[Close]

BLAST of Csor.00g043240.m01 vs. NCBI nr
Match: XP_022155153.1 (uncharacterized protein LOC111022295 [Momordica charantia])

HSP 1 Score: 112 bits (280), Expect = 8.72e-29
Identity = 74/140 (52.86%), Postives = 86/140 (61.43%), Query Frame = 0


Query: 1   MLKAAKKKLKFWSRSKKRKKIPDPNDFTPPPPPPCHCCTCHCS-SAIQPSAPPLPPWLDD 60
           MLKAA KKLKFWS+ KKR+K  D + + PPPPPP   C+C CS SAI+PSAPPLPPWLDD
Sbjct: 1   MLKAA-KKLKFWSKDKKRRKTRD-SSYLPPPPPPY--CSCSCSYSAIRPSAPPLPPWLDD 60

Query: 61  RIFPPPEHPEEAEIAAPLVAAPLYQQYMDPDPVYGVPIIVQTDSRRDGSRSRRFAVSGCV 120
           R         E   A  + AA  YQQY  P+PVYG+PI V+  S R   RS         
Sbjct: 61  RTL---LLQSEPPAATGVEAAASYQQYTAPNPVYGLPI-VEMGSIRTRERSL-------F 120

Query: 121 GDLGIRIIGCFCPCFRTPKA 139
            DLG R+I CFCPC    +A
Sbjct: 121 TDLGARLIRCFCPCLHVREA 125

[Close]

BLAST of Csor.00g043240.m01 vs. NCBI nr
Match: KAE8007888.1 (hypothetical protein FH972_004447 [Carpinus fangiana])

HSP 1 Score: 108 bits (269), Expect = 9.83e-27
Identity = 70/169 (41.42%), Postives = 90/169 (53.25%), Query Frame = 0


Query: 1   MLKAAKKKLKFWSRSKKRKKIPDPNDFTPPPPPPCHCCTCHCSSAIQPSAPPLPPWLD-- 60
           M+KA  KKLKFWSR K++KK  DP      PPPPCHC   H   + QPSAPPLPPWLD  
Sbjct: 3   MMKAV-KKLKFWSRKKRKKKTQDPYYL---PPPPCHCY--HSCYSTQPSAPPLPPWLDLE 62

Query: 61  ---DRIFPPP--------EHPEEAEI---------AAPL---------VAAPLYQQYMDP 120
              D+  P P         +P +A +          +P+         V+ P YQQYM P
Sbjct: 63  QTHDQAIPEPALQPVPDLSYPNQARVPSIQEVVTETSPIMYPTLPDAAVSTPSYQQYMAP 122

Query: 121 DPVYGVPIIVQTDSRRDGSRSRRFAVSGCVGDLGIRIIGCFCPCFRTPK 138
           +PVYG+P++V   +RR+    RR    GCV + GI +  CFCPC    +
Sbjct: 123 NPVYGIPVVVGETARRE----RRAGFFGCVVNFGIHLFRCFCPCLSIRE 161

[Close]

BLAST of Csor.00g043240.m01 vs. NCBI nr
Match: XP_034198616.1 (E1A-binding protein p400 [Prunus dulcis] >VVA26904.1 PREDICTED: leucine-rich repeat extensin [Prunus dulcis])

HSP 1 Score: 108 bits (270), Expect = 2.78e-26
Identity = 78/181 (43.09%), Postives = 94/181 (51.93%), Query Frame = 0


Query: 1   MLKAAKKKLKFWSRSKKRKKIPDPNDFTPPPPP--PC--------HCCTCHCSS-AIQPS 60
           M+KA  KKLKFWSR K++KK      + PPPPP  P         HCC+C  S+ + QPS
Sbjct: 39  MIKAV-KKLKFWSRKKRKKKTHHHQPYYPPPPPTRPAPLPPGPRHHCCSCSSSTYSTQPS 98

Query: 61  APPLPPWLD----------DRIFPPPEHPEEAE------------------IAAPLVAAP 120
           APPLPPWLD           ++ P PE   +A+                   ++PL   P
Sbjct: 99  APPLPPWLDAEYTHEALLAPQVQPAPEFGYQADPRQQEPTMKTNADSGTTSTSSPLYLYP 158

Query: 121 L--YQQYMDPDPVYGVPIIVQTDSRRDGSRSRRFA--VSGCVGDLGIRIIGCFCPCFRTP 138
              YQQYM PDPVYGVP+  QT + R  +R R  A  V GCV D GIR   CFCPCF   
Sbjct: 159 TSSYQQYMVPDPVYGVPV-AQTQTPRATTRERSAAGGVFGCVVDFGIRFFRCFCPCFHIE 217

[Close]

BLAST of Csor.00g043240.m01 vs. ExPASy TrEMBL
Match: A0A6J1EYP6 (uncharacterized protein LOC111439771 OS=Cucurbita moschata OX=3662 GN=LOC111439771 PE=4 SV=1)

HSP 1 Score: 269 bits (687), Expect = 5.40e-91
Identity = 130/139 (93.53%), Postives = 133/139 (95.68%), Query Frame = 0


Query: 1   MLKAAKKKLKFWSRSKKRKKIPDPNDFTPPPPPPCHCCTCHCSSAIQPSAPPLPPWLDDR 60
           MLKAAKKKLKFWSRSKKRKKIP+PNDF    PPPCHCCTCHCSSAIQPSAPPLPPWLDDR
Sbjct: 1   MLKAAKKKLKFWSRSKKRKKIPNPNDF----PPPCHCCTCHCSSAIQPSAPPLPPWLDDR 60

Query: 61  IFPPPEHPEEAEIAAPLVAAPLYQQYMDPDPVYGVPIIVQTDSRRDGSRSRRFAVSGCVG 120
           IFPP EHPEEAEIAAPLVAAPLYQ YMDPDPVYGVPIIVQTDSRRDGSRSRRFAVSGCVG
Sbjct: 61  IFPPSEHPEEAEIAAPLVAAPLYQHYMDPDPVYGVPIIVQTDSRRDGSRSRRFAVSGCVG 120

Query: 121 DLGIRIIGCFCPCFRTPKA 139
           +LGIRIIGCFCPCFRTP+A
Sbjct: 121 ELGIRIIGCFCPCFRTPEA 135

[Close]

BLAST of Csor.00g043240.m01 vs. ExPASy TrEMBL
Match: A0A6J1DM77 (uncharacterized protein LOC111022295 OS=Momordica charantia OX=3673 GN=LOC111022295 PE=4 SV=1)

HSP 1 Score: 112 bits (280), Expect = 4.22e-29
Identity = 74/140 (52.86%), Postives = 86/140 (61.43%), Query Frame = 0


Query: 1   MLKAAKKKLKFWSRSKKRKKIPDPNDFTPPPPPPCHCCTCHCS-SAIQPSAPPLPPWLDD 60
           MLKAA KKLKFWS+ KKR+K  D + + PPPPPP   C+C CS SAI+PSAPPLPPWLDD
Sbjct: 1   MLKAA-KKLKFWSKDKKRRKTRD-SSYLPPPPPPY--CSCSCSYSAIRPSAPPLPPWLDD 60

Query: 61  RIFPPPEHPEEAEIAAPLVAAPLYQQYMDPDPVYGVPIIVQTDSRRDGSRSRRFAVSGCV 120
           R         E   A  + AA  YQQY  P+PVYG+PI V+  S R   RS         
Sbjct: 61  RTL---LLQSEPPAATGVEAAASYQQYTAPNPVYGLPI-VEMGSIRTRERSL-------F 120

Query: 121 GDLGIRIIGCFCPCFRTPKA 139
            DLG R+I CFCPC    +A
Sbjct: 121 TDLGARLIRCFCPCLHVREA 125

[Close]

BLAST of Csor.00g043240.m01 vs. ExPASy TrEMBL
Match: A0A5N6QN08 (Uncharacterized protein OS=Carpinus fangiana OX=176857 GN=FH972_004447 PE=4 SV=1)

HSP 1 Score: 108 bits (269), Expect = 4.76e-27
Identity = 70/169 (41.42%), Postives = 90/169 (53.25%), Query Frame = 0


Query: 1   MLKAAKKKLKFWSRSKKRKKIPDPNDFTPPPPPPCHCCTCHCSSAIQPSAPPLPPWLD-- 60
           M+KA  KKLKFWSR K++KK  DP      PPPPCHC   H   + QPSAPPLPPWLD  
Sbjct: 3   MMKAV-KKLKFWSRKKRKKKTQDPYYL---PPPPCHCY--HSCYSTQPSAPPLPPWLDLE 62

Query: 61  ---DRIFPPP--------EHPEEAEI---------AAPL---------VAAPLYQQYMDP 120
              D+  P P         +P +A +          +P+         V+ P YQQYM P
Sbjct: 63  QTHDQAIPEPALQPVPDLSYPNQARVPSIQEVVTETSPIMYPTLPDAAVSTPSYQQYMAP 122

Query: 121 DPVYGVPIIVQTDSRRDGSRSRRFAVSGCVGDLGIRIIGCFCPCFRTPK 138
           +PVYG+P++V   +RR+    RR    GCV + GI +  CFCPC    +
Sbjct: 123 NPVYGIPVVVGETARRE----RRAGFFGCVVNFGIHLFRCFCPCLSIRE 161

[Close]

BLAST of Csor.00g043240.m01 vs. ExPASy TrEMBL
Match: A0A5E4FFI2 (PREDICTED: leucine-rich repeat extensin OS=Prunus dulcis OX=3755 GN=ALMOND_2B000460 PE=4 SV=1)

HSP 1 Score: 108 bits (270), Expect = 1.35e-26
Identity = 78/181 (43.09%), Postives = 94/181 (51.93%), Query Frame = 0


Query: 1   MLKAAKKKLKFWSRSKKRKKIPDPNDFTPPPPP--PC--------HCCTCHCSS-AIQPS 60
           M+KA  KKLKFWSR K++KK      + PPPPP  P         HCC+C  S+ + QPS
Sbjct: 39  MIKAV-KKLKFWSRKKRKKKTHHHQPYYPPPPPTRPAPLPPGPRHHCCSCSSSTYSTQPS 98

Query: 61  APPLPPWLD----------DRIFPPPEHPEEAE------------------IAAPLVAAP 120
           APPLPPWLD           ++ P PE   +A+                   ++PL   P
Sbjct: 99  APPLPPWLDAEYTHEALLAPQVQPAPEFGYQADPRQQEPTMKTNADSGTTSTSSPLYLYP 158

Query: 121 L--YQQYMDPDPVYGVPIIVQTDSRRDGSRSRRFA--VSGCVGDLGIRIIGCFCPCFRTP 138
              YQQYM PDPVYGVP+  QT + R  +R R  A  V GCV D GIR   CFCPCF   
Sbjct: 159 TSSYQQYMVPDPVYGVPV-AQTQTPRATTRERSAAGGVFGCVVDFGIRFFRCFCPCFHIE 217

[Close]

BLAST of Csor.00g043240.m01 vs. ExPASy TrEMBL
Match: A0A251RP50 (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_1G585100 PE=4 SV=1)

HSP 1 Score: 106 bits (265), Expect = 3.41e-26
Identity = 79/186 (42.47%), Postives = 94/186 (50.54%), Query Frame = 0


Query: 1   MLKAAKKKLKFWSRSKKRKKIPDPNDFTPPPPP--PC--------HCCTCHCSS-AIQPS 60
           M+KA  KKLKFWSR K++KK      + PPPPP  P         HCC+C  S+ + QPS
Sbjct: 1   MIKAV-KKLKFWSRKKRKKKTLHHQPYYPPPPPTRPAPLPPGPRHHCCSCSSSTYSTQPS 60

Query: 61  APPLPPWLD----------DRIFPPPEHPEEAE------------------IAAPLVAAP 120
           APPLPPWLD           ++ P PE   +A+                   ++PL   P
Sbjct: 61  APPLPPWLDAEYTHEALLAPQVQPAPEFGYQADPRQQEPTMKTNADSGTTSTSSPLYLYP 120

Query: 121 L--YQQYMDPDPVYGVPII-----VQTDSRRDGSRSRRFA--VSGCVGDLGIRIIGCFCP 138
              YQQYM PDPVYGVPI       QT + R  +R R  A  V GCV D GIR   CFCP
Sbjct: 121 TSSYQQYMVPDPVYGVPIAQTQTQTQTQTPRATTRERSAAGGVFGCVVDFGIRFFRCFCP 180

[Close]

BLAST of Csor.00g043240.m01 vs. TAIR 10
Match: AT4G24265.1 (unknown protein; Has 3 Blast hits to 3 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 3; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 58.9 bits (141), Expect = 3.7e-09
Identity = 49/152 (32.24%), Postives = 70/152 (46.05%), Query Frame = 0


Query: 7   KKLKFWSRSKKRKKIPDPNDFTPPPPPPCHCCTCHCSSA----IQPSAPPLPPWLDD-RI 66
           KKL FWSR K+++K   P+        P HC   + S+A    ++P+APPLP W D+ R 
Sbjct: 2   KKLTFWSRKKRKRKQACPSQ-------PHHCSCEYSSTAVAVLVEPTAPPLPYWFDETRS 61

Query: 67  FPPPE------------HPEEAEI--AAPLVAA-------PLYQQYMDPDPVYGVPIIVQ 126
             PPE            H +E  I  A PL++          YQQYM P+P   V  +  
Sbjct: 62  LCPPETSSFPWTTHHLPHQQEETIVEATPLLSQVSDLRIYQSYQQYMVPNPTSNVHFVEP 121

Query: 127 TDSRRDGSRSRRFAVSGCVGDLGIRIIGCFCP 133
             ++R         + GCV +L   ++ CF P
Sbjct: 122 ATAKRS------VGIFGCVIELSSSLVRCFIP 140

The following BLAST results are available for this feature:

BLAST of Csor.00g043240.m01 vs.


Match Name	E-value	Identity	Description

BLAST of Csor.00g043240.m01 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6601672.1	3.13e-100	100.00	hypothetical protein SDJN03_06905, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_022933064.1	1.12e-90	93.53	uncharacterized protein LOC111439771 [Cucurbita moschata]	[more]
XP_022155153.1	8.72e-29	52.86	uncharacterized protein LOC111022295 [Momordica charantia]	[more]
KAE8007888.1	9.83e-27	41.42	hypothetical protein FH972_004447 [Carpinus fangiana]	[more]
XP_034198616.1	2.78e-26	43.09	E1A-binding protein p400 [Prunus dulcis] >VVA26904.1 PREDICTED: leucine-rich rep...	[more]

BLAST of Csor.00g043240.m01 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1EYP6	5.40e-91	93.53	uncharacterized protein LOC111439771 OS=Cucurbita moschata OX=3662 GN=LOC1114397...	[more]
A0A6J1DM77	4.22e-29	52.86	uncharacterized protein LOC111022295 OS=Momordica charantia OX=3673 GN=LOC111022...	[more]
A0A5N6QN08	4.76e-27	41.42	Uncharacterized protein OS=Carpinus fangiana OX=176857 GN=FH972_004447 PE=4 SV=1	[more]
A0A5E4FFI2	1.35e-26	43.09	PREDICTED: leucine-rich repeat extensin OS=Prunus dulcis OX=3755 GN=ALMOND_2B000...	[more]
A0A251RP50	3.41e-26	42.47	Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_1G585100 PE=4 SV=1	[more]

BLAST of Csor.00g043240.m01 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G24265.1	3.7e-09	32.24	unknown protein; Has 3 Blast hits to 3 proteins in 2 species: Archae - 0; Bacter...	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..17
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..30

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Csor.00g043240	Csor.00g043240	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Csor.00g043240.m01.CDS01	Csor.00g043240.m01.CDS01	CDS

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Csor.00g043240.m01.start_codon01	Csor.00g043240.m01.start_codon01	start_codon

The following single feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Csor.00g043240.m01.single01	Csor.00g043240.m01.single01	single

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Csor.00g043240.m01.stop_codon01	Csor.00g043240.m01.stop_codon01	stop_codon

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Csor.00g043240.m01	Csor.00g043240.m01-protein	polypeptide