CsaV3_7G026480 (gene) Cucumber (Chinese Long) v3

Overview


Name	CsaV3_7G026480
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Description	Unknown protein
Location	chr7: 15927743 .. 15927997 (+)
RNA-Seq Expression	CsaV3_7G026480
Synteny	CsaV3_7G026480

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

GCGGCTACTGAATTTCAAATGAGGCTTGATAGTATAGAAAAAGAAGAAGACGTGAATGAAAAAAACCTAGATGCTAATACATCTTGTGGGGTGGACAAATTTCAACCAAAAAAATATGATGAAAATGAAGGAGATGAAGGGGATGAAAATAAACAACACCACACAACAACTCCTAATCTAGTCAACCAACAAATAGAACAACCTAATGAAGACAAAGAATCAAAAAGGGATGGAGGAAGAAACACAAGCCACGAG

mRNA sequence

GCGGCTACTGAATTTCAAATGAGGCTTGATAGTATAGAAAAAGAAGAAGACGTGAATGAAAAAAACCTAGATGCTAATACATCTTGTGGGGTGGACAAATTTCAACCAAAAAAATATGATGAAAATGAAGGAGATGAAGGGGATGAAAATAAACAACACCACACAACAACTCCTAATCTAGTCAACCAACAAATAGAACAACCTAATGAAGACAAAGAATCAAAAAGGGATGGAGGAAGAAACACAAGCCACGAG

Coding sequence (CDS)

GCGGCTACTGAATTTCAAATGAGGCTTGATAGTATAGAAAAAGAAGAAGACGTGAATGAAAAAAACCTAGATGCTAATACATCTTGTGGGGTGGACAAATTTCAACCAAAAAAATATGATGAAAATGAAGGAGATGAAGGGGATGAAAATAAACAACACCACACAACAACTCCTAATCTAGTCAACCAACAAATAGAACAACCTAATGAAGACAAAGAATCAAAAAGGGATGGAGGAAGAAACACAAGCCACGAG

Protein sequence

AATEFQMRLDSIEKEEDVNEKNLDANTSCGVDKFQPKKYDENEGDEGDENKQHHTTTPNLVNQQIEQPNEDKESKRDGGRNTSHE

Homology

[Close]

BLAST of CsaV3_7G026480 vs. NCBI nr
Match: KAE8646261.1 (hypothetical protein Csa_015606, partial [Cucumis sativus])

HSP 1 Score: 168.7 bits (426), Expect = 2.2e-38
Identity = 85/85 (100.00%), Postives = 85/85 (100.00%), Query Frame = 0


Query: 1  AATEFQMRLDSIEKEEDVNEKNLDANTSCGVDKFQPKKYDENEGDEGDENKQHHTTTPNL 60
          AATEFQMRLDSIEKEEDVNEKNLDANTSCGVDKFQPKKYDENEGDEGDENKQHHTTTPNL
Sbjct: 1  AATEFQMRLDSIEKEEDVNEKNLDANTSCGVDKFQPKKYDENEGDEGDENKQHHTTTPNL 60

Query: 61 VNQQIEQPNEDKESKRDGGRNTSHE 86
          VNQQIEQPNEDKESKRDGGRNTSHE
Sbjct: 61 VNQQIEQPNEDKESKRDGGRNTSHE 85

[Close]

BLAST of CsaV3_7G026480 vs. NCBI nr
Match: KAE8650661.1 (hypothetical protein Csa_011654 [Cucumis sativus])

HSP 1 Score: 144.4 bits (363), Expect = 4.4e-31
Identity = 76/86 (88.37%), Postives = 81/86 (94.19%), Query Frame = 0


Query: 1   AATEFQMRLDSI-EKEEDVNEKNLDANTSCGVDKFQPKKYDENEGDEGDENKQHHTTTPN 60
           AATEFQ RLDSI E+EE+VN KNLDANTS GVDKFQPKKYDENEGDEGDENKQH TT+PN
Sbjct: 43  AATEFQRRLDSIKEEEEEVNVKNLDANTSSGVDKFQPKKYDENEGDEGDENKQHQTTSPN 102

Query: 61  LVNQQIEQPNEDKESKRDGGRNTSHE 86
           LVNQQIEQPNEDKESKR+GGRNTSH+
Sbjct: 103 LVNQQIEQPNEDKESKREGGRNTSHK 128

The following BLAST results are available for this feature:

BLAST of CsaV3_7G026480 vs. NCBI nr


Match Name	E-value	Identity	Description
KAE8646261.1	2.2e-38	100.00	hypothetical protein Csa_015606, partial [Cucumis sativus]	[more]
KAE8650661.1	4.4e-31	88.37	hypothetical protein Csa_011654 [Cucumis sativus]	[more]

BLAST of CsaV3_7G026480 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CsaV3_7G026480 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CsaV3_7G026480 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 8..22
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 34..53
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 68..85
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..85

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_7G026480.1	CsaV3_7G026480.1	mRNA