CsaV3_7G026480 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_7G026480
Typegene
OrganismCucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr7: 15927743 .. 15927997 (+)
RNA-Seq ExpressionCsaV3_7G026480
SyntenyCsaV3_7G026480
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
GCGGCTACTGAATTTCAAATGAGGCTTGATAGTATAGAAAAAGAAGAAGACGTGAATGAAAAAAACCTAGATGCTAATACATCTTGTGGGGTGGACAAATTTCAACCAAAAAAATATGATGAAAATGAAGGAGATGAAGGGGATGAAAATAAACAACACCACACAACAACTCCTAATCTAGTCAACCAACAAATAGAACAACCTAATGAAGACAAAGAATCAAAAAGGGATGGAGGAAGAAACACAAGCCACGAG

mRNA sequence

GCGGCTACTGAATTTCAAATGAGGCTTGATAGTATAGAAAAAGAAGAAGACGTGAATGAAAAAAACCTAGATGCTAATACATCTTGTGGGGTGGACAAATTTCAACCAAAAAAATATGATGAAAATGAAGGAGATGAAGGGGATGAAAATAAACAACACCACACAACAACTCCTAATCTAGTCAACCAACAAATAGAACAACCTAATGAAGACAAAGAATCAAAAAGGGATGGAGGAAGAAACACAAGCCACGAG

Coding sequence (CDS)

GCGGCTACTGAATTTCAAATGAGGCTTGATAGTATAGAAAAAGAAGAAGACGTGAATGAAAAAAACCTAGATGCTAATACATCTTGTGGGGTGGACAAATTTCAACCAAAAAAATATGATGAAAATGAAGGAGATGAAGGGGATGAAAATAAACAACACCACACAACAACTCCTAATCTAGTCAACCAACAAATAGAACAACCTAATGAAGACAAAGAATCAAAAAGGGATGGAGGAAGAAACACAAGCCACGAG

Protein sequence

AATEFQMRLDSIEKEEDVNEKNLDANTSCGVDKFQPKKYDENEGDEGDENKQHHTTTPNLVNQQIEQPNEDKESKRDGGRNTSHE
Homology
BLAST of CsaV3_7G026480 vs. NCBI nr
Match: KAE8646261.1 (hypothetical protein Csa_015606, partial [Cucumis sativus])

HSP 1 Score: 168.7 bits (426), Expect = 2.2e-38
Identity = 85/85 (100.00%), Postives = 85/85 (100.00%), Query Frame = 0

Query: 1  AATEFQMRLDSIEKEEDVNEKNLDANTSCGVDKFQPKKYDENEGDEGDENKQHHTTTPNL 60
          AATEFQMRLDSIEKEEDVNEKNLDANTSCGVDKFQPKKYDENEGDEGDENKQHHTTTPNL
Sbjct: 1  AATEFQMRLDSIEKEEDVNEKNLDANTSCGVDKFQPKKYDENEGDEGDENKQHHTTTPNL 60

Query: 61 VNQQIEQPNEDKESKRDGGRNTSHE 86
          VNQQIEQPNEDKESKRDGGRNTSHE
Sbjct: 61 VNQQIEQPNEDKESKRDGGRNTSHE 85

BLAST of CsaV3_7G026480 vs. NCBI nr
Match: KAE8650661.1 (hypothetical protein Csa_011654 [Cucumis sativus])

HSP 1 Score: 144.4 bits (363), Expect = 4.4e-31
Identity = 76/86 (88.37%), Postives = 81/86 (94.19%), Query Frame = 0

Query: 1   AATEFQMRLDSI-EKEEDVNEKNLDANTSCGVDKFQPKKYDENEGDEGDENKQHHTTTPN 60
           AATEFQ RLDSI E+EE+VN KNLDANTS GVDKFQPKKYDENEGDEGDENKQH TT+PN
Sbjct: 43  AATEFQRRLDSIKEEEEEVNVKNLDANTSSGVDKFQPKKYDENEGDEGDENKQHQTTSPN 102

Query: 61  LVNQQIEQPNEDKESKRDGGRNTSHE 86
           LVNQQIEQPNEDKESKR+GGRNTSH+
Sbjct: 103 LVNQQIEQPNEDKESKREGGRNTSHK 128

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAE8646261.12.2e-38100.00hypothetical protein Csa_015606, partial [Cucumis sativus][more]
KAE8650661.14.4e-3188.37hypothetical protein Csa_011654 [Cucumis sativus][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 8..22
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 34..53
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 68..85
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..85

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_7G026480.1CsaV3_7G026480.1mRNA