CsaV3_7G022670 (gene) Cucumber (Chinese Long) v3

Overview


Name	CsaV3_7G022670
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Description	Gypsy/ty3 element polyprotein
Location	chr7: 11529695 .. 11529848 (-)
RNA-Seq Expression	CsaV3_7G022670
Synteny	CsaV3_7G022670

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCCGATGATGTTTTGATAGGGACATTTACGAACAGTTTGGATCCAGTGATAATAATGGATGTTTTTGCAATGCGGACCGTGGGCCTGGAAAATATGATGGATGCGACCCAGTTGGATGAGAAGAAATTAGAAATGGCTCGGGCTTCTCAAG

mRNA sequence

ATGGCCGATGATGTTTTGATAGGGACATTTACGAACAGTTTGGATCCAGTGATAATAATGGATGTTTTTGCAATGCGGACCGTGGGCCTGGAAAATATGATGGATGCGACCCAGTTGGATGAGAAGAAATTAGAAATGGCTCGGGCTTCTCAAG

Coding sequence (CDS)

ATGGCCGATGATGTTTTGATAGGGACATTTACGAACAGTTTGGATCCAGTGATAATAATGGATGTTTTTGCAATGCGGACCGTGGGCCTGGAAAATATGATGGATGCGACCCAGTTGGATGAGAAGAAATTAGAAATGGCTCGGGCTTCTCAAG

Protein sequence

MADDVLIGTFTNSLDPVIIMDVFAMRTVGLENMMDATQLDEKKLEMARASQX

Homology

[Close]

BLAST of CsaV3_7G022670 vs. NCBI nr
Match: KAE8646098.1 (hypothetical protein Csa_016781, partial [Cucumis sativus])

HSP 1 Score: 98.2 bits (243), Expect = 2.2e-17
Identity = 51/51 (100.00%), Postives = 51/51 (100.00%), Query Frame = 0


Query: 1  MADDVLIGTFTNSLDPVIIMDVFAMRTVGLENMMDATQLDEKKLEMARASQ 52
          MADDVLIGTFTNSLDPVIIMDVFAMRTVGLENMMDATQLDEKKLEMARASQ
Sbjct: 1  MADDVLIGTFTNSLDPVIIMDVFAMRTVGLENMMDATQLDEKKLEMARASQ 51

[Close]

BLAST of CsaV3_7G022670 vs. NCBI nr
Match: TYK17386.1 (gypsy/ty3 element polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 73.2 bits (178), Expect = 7.6e-10
Identity = 37/50 (74.00%), Postives = 43/50 (86.00%), Query Frame = 0


Query: 1   MADDVLIGTFTNSLDPVIIMDVFAMRTVGLENMMDATQLDEKKLEMARAS 51
           MA+DVL+G FTN LDPVI  +VFAMR VGLENMMDA +L E+KLE+ARAS
Sbjct: 207 MAEDVLVGAFTNGLDPVIRTEVFAMRAVGLENMMDAARLAEEKLEIARAS 256

[Close]

BLAST of CsaV3_7G022670 vs. NCBI nr
Match: KAA0038377.1 (gypsy/ty3 element polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 71.2 bits (173), Expect = 2.9e-09
Identity = 36/50 (72.00%), Postives = 43/50 (86.00%), Query Frame = 0


Query: 1   MADDVLIGTFTNSLDPVIIMDVFAMRTVGLENMMDATQLDEKKLEMARAS 51
           MA+DVL+G FTN LDPVI  +VFAMR VGLE+MMDA +L E+KLE+ARAS
Sbjct: 207 MAEDVLVGAFTNGLDPVIRTEVFAMRAVGLEDMMDAARLAEEKLEIARAS 256

[Close]

BLAST of CsaV3_7G022670 vs. NCBI nr
Match: KAA0036997.1 (gypsy/ty3 element polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 71.2 bits (173), Expect = 2.9e-09
Identity = 36/50 (72.00%), Postives = 43/50 (86.00%), Query Frame = 0


Query: 1   MADDVLIGTFTNSLDPVIIMDVFAMRTVGLENMMDATQLDEKKLEMARAS 51
           MA+DVL+G FTN LDPVI  +VFAMR VGLE+MMDA +L E+KLE+ARAS
Sbjct: 207 MAEDVLVGAFTNGLDPVIRTEVFAMRAVGLEDMMDAARLAEEKLEIARAS 256

[Close]

BLAST of CsaV3_7G022670 vs. NCBI nr
Match: TYK21209.1 (Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 71.2 bits (173), Expect = 2.9e-09
Identity = 36/50 (72.00%), Postives = 43/50 (86.00%), Query Frame = 0


Query: 1   MADDVLIGTFTNSLDPVIIMDVFAMRTVGLENMMDATQLDEKKLEMARAS 51
           MA+DVL+G FTN LDPVI  +VFAMR VGLE+MMDA +L E+KLE+ARAS
Sbjct: 207 MAEDVLVGAFTNGLDPVIRTEVFAMRAVGLEDMMDAARLAEEKLEIARAS 256

[Close]

BLAST of CsaV3_7G022670 vs. ExPASy TrEMBL
Match: A0A5D3D378 (Gypsy/ty3 element polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold434G002460 PE=4 SV=1)

HSP 1 Score: 73.2 bits (178), Expect = 3.7e-10
Identity = 37/50 (74.00%), Postives = 43/50 (86.00%), Query Frame = 0


Query: 1   MADDVLIGTFTNSLDPVIIMDVFAMRTVGLENMMDATQLDEKKLEMARAS 51
           MA+DVL+G FTN LDPVI  +VFAMR VGLENMMDA +L E+KLE+ARAS
Sbjct: 207 MAEDVLVGAFTNGLDPVIRTEVFAMRAVGLENMMDAARLAEEKLEIARAS 256

[Close]

BLAST of CsaV3_7G022670 vs. ExPASy TrEMBL
Match: A0A5D3BD16 (Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold453G001350 PE=4 SV=1)

HSP 1 Score: 71.2 bits (173), Expect = 1.4e-09
Identity = 36/50 (72.00%), Postives = 43/50 (86.00%), Query Frame = 0


Query: 1   MADDVLIGTFTNSLDPVIIMDVFAMRTVGLENMMDATQLDEKKLEMARAS 51
           MA+DVL+G FTN LDPVI  +VFAMR VGLE+MMDA +L E+KLE+ARAS
Sbjct: 207 MAEDVLVGAFTNGLDPVIRTEVFAMRAVGLEDMMDAARLAEEKLEIARAS 256

[Close]

BLAST of CsaV3_7G022670 vs. ExPASy TrEMBL
Match: A0A5A7UV13 (Gypsy/ty3 element polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold98G00670 PE=4 SV=1)

HSP 1 Score: 71.2 bits (173), Expect = 1.4e-09
Identity = 36/50 (72.00%), Postives = 43/50 (86.00%), Query Frame = 0


Query: 1   MADDVLIGTFTNSLDPVIIMDVFAMRTVGLENMMDATQLDEKKLEMARAS 51
           MA+DVL+G FTN LDPVI  +VFAMR VGLE+MMDA +L E+KLE+ARAS
Sbjct: 207 MAEDVLVGAFTNGLDPVIRTEVFAMRAVGLEDMMDAARLAEEKLEIARAS 256

[Close]

BLAST of CsaV3_7G022670 vs. ExPASy TrEMBL
Match: A0A5D3DZ01 (Gypsy/ty3 element polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold629G00920 PE=4 SV=1)

HSP 1 Score: 71.2 bits (173), Expect = 1.4e-09
Identity = 36/50 (72.00%), Postives = 43/50 (86.00%), Query Frame = 0


Query: 1   MADDVLIGTFTNSLDPVIIMDVFAMRTVGLENMMDATQLDEKKLEMARAS 51
           MA+DVL+G FTN LDPVI  +VFAMR VGLE+MMDA +L E+KLE+ARAS
Sbjct: 207 MAEDVLVGAFTNGLDPVIRTEVFAMRAVGLEDMMDAARLAEEKLEIARAS 256

[Close]

BLAST of CsaV3_7G022670 vs. ExPASy TrEMBL
Match: A0A5A7T9X9 (Gypsy/ty3 element polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold270G002630 PE=4 SV=1)

HSP 1 Score: 71.2 bits (173), Expect = 1.4e-09
Identity = 36/50 (72.00%), Postives = 43/50 (86.00%), Query Frame = 0


Query: 1   MADDVLIGTFTNSLDPVIIMDVFAMRTVGLENMMDATQLDEKKLEMARAS 51
           MA+DVL+G FTN LDPVI  +VFAMR VGLE+MMDA +L E+KLE+ARAS
Sbjct: 207 MAEDVLVGAFTNGLDPVIRTEVFAMRAVGLEDMMDAARLAEEKLEIARAS 256

The following BLAST results are available for this feature:

BLAST of CsaV3_7G022670 vs. NCBI nr


Match Name	E-value	Identity	Description
KAE8646098.1	2.2e-17	100.00	hypothetical protein Csa_016781, partial [Cucumis sativus]	[more]
TYK17386.1	7.6e-10	74.00	gypsy/ty3 element polyprotein [Cucumis melo var. makuwa]	[more]
KAA0038377.1	2.9e-09	72.00	gypsy/ty3 element polyprotein [Cucumis melo var. makuwa]	[more]
KAA0036997.1	2.9e-09	72.00	gypsy/ty3 element polyprotein [Cucumis melo var. makuwa]	[more]
TYK21209.1	2.9e-09	72.00	Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa]	[more]

BLAST of CsaV3_7G022670 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CsaV3_7G022670 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3D378	3.7e-10	74.00	Gypsy/ty3 element polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sc...	[more]
A0A5D3BD16	1.4e-09	72.00	Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]
A0A5A7UV13	1.4e-09	72.00	Gypsy/ty3 element polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_sc...	[more]
A0A5D3DZ01	1.4e-09	72.00	Gypsy/ty3 element polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sc...	[more]
A0A5A7T9X9	1.4e-09	72.00	Gypsy/ty3 element polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_sc...	[more]

BLAST of CsaV3_7G022670 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_7G022670.1	CsaV3_7G022670.1	mRNA