CsaV3_6G022250 (gene) Cucumber (Chinese Long) v3

Overview


Name	CsaV3_6G022250
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Description	Unknown protein
Location	chr6: 15207061 .. 15207372 (-)
RNA-Seq Expression	CsaV3_6G022250
Synteny	CsaV3_6G022250

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAGAAGGAAGAAGGAAGAATAAAGAATGAAGAGGAGAAGATTCTTCTGTGTCTGATCGTGCTTAGTCGTGTCAGGTGGCCACGTCTTTCTTCCTCATTATCTTTGTTTTATACTAATTTTCAAATTTGCAGTGTTGCCAAAATAAGTACTTCTGATCTCTTTCAGCTTTGCTGTGTTCTTCATGGACTTATGTTTTCCCAACCTGACTTTCTAACCTTGTTGGGCCCGAGATGGGTGTTTGGAGATGTTAGGGTTCTTAGTTGTATTTTCAAAAAAATAAAAACTATTAACCTAACTTCTTCGTTATAG

mRNA sequence

ATGAAGAAGGAAGAAGGAAGAATAAAGAATGAAGAGGAGAAGATTCTTCTGTGTCTGATCGTGCTTAGTCGTGTCAGGTGGCCACGTCTTTCTTCCTCATTATCTTTGTTTTATACTAATTTTCAAATTTGCAGTGTTGCCAAAATAAGTACTTCTGATCTCTTTCAGCTTTGCTGTGTTCTTCATGGACTTATGTTTTCCCAACCTGACTTTCTAACCTTGTTGGGCCCGAGATGGGTGTTTGGAGATGTTAGGGTTCTTAGTTGTATTTTCAAAAAAATAAAAACTATTAACCTAACTTCTTCGTTATAG

Coding sequence (CDS)

ATGAAGAAGGAAGAAGGAAGAATAAAGAATGAAGAGGAGAAGATTCTTCTGTGTCTGATCGTGCTTAGTCGTGTCAGGTGGCCACGTCTTTCTTCCTCATTATCTTTGTTTTATACTAATTTTCAAATTTGCAGTGTTGCCAAAATAAGTACTTCTGATCTCTTTCAGCTTTGCTGTGTTCTTCATGGACTTATGTTTTCCCAACCTGACTTTCTAACCTTGTTGGGCCCGAGATGGGTGTTTGGAGATGTTAGGGTTCTTAGTTGTATTTTCAAAAAAATAAAAACTATTAACCTAACTTCTTCGTTATAG

Protein sequence

MKKEEGRIKNEEEKILLCLIVLSRVRWPRLSSSLSLFYTNFQICSVAKISTSDLFQLCCVLHGLMFSQPDFLTLLGPRWVFGDVRVLSCIFKKIKTINLTSSL*

Homology

[Close]

BLAST of CsaV3_6G022250 vs. NCBI nr
Match: KAE8647071.1 (hypothetical protein Csa_022949 [Cucumis sativus])

HSP 1 Score: 207.2 bits (526), Expect = 6.7e-50
Identity = 103/103 (100.00%), Postives = 103/103 (100.00%), Query Frame = 0


Query: 1   MKKEEGRIKNEEEKILLCLIVLSRVRWPRLSSSLSLFYTNFQICSVAKISTSDLFQLCCV 60
           MKKEEGRIKNEEEKILLCLIVLSRVRWPRLSSSLSLFYTNFQICSVAKISTSDLFQLCCV
Sbjct: 1   MKKEEGRIKNEEEKILLCLIVLSRVRWPRLSSSLSLFYTNFQICSVAKISTSDLFQLCCV 60

Query: 61  LHGLMFSQPDFLTLLGPRWVFGDVRVLSCIFKKIKTINLTSSL 104
           LHGLMFSQPDFLTLLGPRWVFGDVRVLSCIFKKIKTINLTSSL
Sbjct: 61  LHGLMFSQPDFLTLLGPRWVFGDVRVLSCIFKKIKTINLTSSL 103

The following BLAST results are available for this feature:

BLAST of CsaV3_6G022250 vs. NCBI nr


Match Name	E-value	Identity	Description
KAE8647071.1	6.7e-50	100.00	hypothetical protein Csa_022949 [Cucumis sativus]	[more]

BLAST of CsaV3_6G022250 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CsaV3_6G022250 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CsaV3_6G022250 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_6G022250.1	CsaV3_6G022250.1	mRNA