CsaV3_5G014340 (gene) Cucumber (Chinese Long) v3

Overview


Name	CsaV3_5G014340
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Description	Ty3/gypsy retrotransposon protein
Location	chr5: 11345956 .. 11346135 (+)
RNA-Seq Expression	CsaV3_5G014340
Synteny	CsaV3_5G014340

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTTCAGGAATCTGTGGAAGAACTTCAACCAGAATTCGAGCAATTACAACTGGAATTTGATGACGTGTTTAATATGTCGGCGAAGCTTCCCCCCATGAGACAGGTCGACCATCGAATCCAATTGAAAGAGGATACAGACCCCATCAACGTGAGATCGTACCGCTACCCACACGCTTAG

mRNA sequence

ATGGTTCAGGAATCTGTGGAAGAACTTCAACCAGAATTCGAGCAATTACAACTGGAATTTGATGACGTGTTTAATATGTCGGCGAAGCTTCCCCCCATGAGACAGGTCGACCATCGAATCCAATTGAAAGAGGATACAGACCCCATCAACGTGAGATCGTACCGCTACCCACACGCTTAG

Coding sequence (CDS)

ATGGTTCAGGAATCTGTGGAAGAACTTCAACCAGAATTCGAGCAATTACAACTGGAATTTGATGACGTGTTTAATATGTCGGCGAAGCTTCCCCCCATGAGACAGGTCGACCATCGAATCCAATTGAAAGAGGATACAGACCCCATCAACGTGAGATCGTACCGCTACCCACACGCTTAG

Protein sequence

MVQESVEELQPEFEQLQLEFDDVFNMSAKLPPMRQVDHRIQLKEDTDPINVRSYRYPHA*

Homology

[Close]

BLAST of CsaV3_5G014340 vs. NCBI nr
Match: KAE8648175.1 (hypothetical protein Csa_018448 [Cucumis sativus])

HSP 1 Score: 121.7 bits (304), Expect = 2.1e-24
Identity = 59/59 (100.00%), Postives = 59/59 (100.00%), Query Frame = 0


Query: 1  MVQESVEELQPEFEQLQLEFDDVFNMSAKLPPMRQVDHRIQLKEDTDPINVRSYRYPHA 60
          MVQESVEELQPEFEQLQLEFDDVFNMSAKLPPMRQVDHRIQLKEDTDPINVRSYRYPHA
Sbjct: 1  MVQESVEELQPEFEQLQLEFDDVFNMSAKLPPMRQVDHRIQLKEDTDPINVRSYRYPHA 59

[Close]

BLAST of CsaV3_5G014340 vs. NCBI nr
Match: TYK05775.1 (putative retroelement pol polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 102.4 bits (254), Expect = 1.3e-18
Identity = 47/59 (79.66%), Postives = 55/59 (93.22%), Query Frame = 0


Query: 1   MVQESVEELQPEFEQLQLEFDDVFNMSAKLPPMRQVDHRIQLKEDTDPINVRSYRYPHA 60
           +++ESVEEL+P+FEQL+L+F D+FNM AKLPPMRQVDHRIQLKE TDPINVR YRYPHA
Sbjct: 53  IIKESVEELRPKFEQLELQFIDIFNMPAKLPPMRQVDHRIQLKEGTDPINVRPYRYPHA 111

[Close]

BLAST of CsaV3_5G014340 vs. NCBI nr
Match: KAA0062470.1 (Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa] >TYK27412.1 Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 96.7 bits (239), Expect = 7.4e-17
Identity = 44/59 (74.58%), Postives = 51/59 (86.44%), Query Frame = 0


Query: 1   MVQESVEELQPEFEQLQLEFDDVFNMSAKLPPMRQVDHRIQLKEDTDPINVRSYRYPHA 60
           +V +SVE+ QPEFEQLQ EF D+F+M  +LPPMRQ+DHRIQLKE TDPINVR YRYPHA
Sbjct: 322 VVTDSVEDFQPEFEQLQQEFSDIFDMPDRLPPMRQIDHRIQLKEGTDPINVRPYRYPHA 380

[Close]

BLAST of CsaV3_5G014340 vs. NCBI nr
Match: KAA0057859.1 (pleiotropic drug resistance protein 1-like [Cucumis melo var. makuwa])

HSP 1 Score: 95.1 bits (235), Expect = 2.2e-16
Identity = 44/59 (74.58%), Postives = 50/59 (84.75%), Query Frame = 0


Query: 1   MVQESVEELQPEFEQLQLEFDDVFNMSAKLPPMRQVDHRIQLKEDTDPINVRSYRYPHA 60
           +V +SVE+ QPEFEQLQ EFDD+F M   LPPMRQ++HRIQLKE TDPINVR YRYPHA
Sbjct: 85  VVTDSVEDYQPEFEQLQQEFDDIFEMPDDLPPMRQINHRIQLKEGTDPINVRPYRYPHA 143

[Close]

BLAST of CsaV3_5G014340 vs. NCBI nr
Match: TYJ98541.1 (pleiotropic drug resistance protein 1-like [Cucumis melo var. makuwa])

HSP 1 Score: 95.1 bits (235), Expect = 2.2e-16
Identity = 44/59 (74.58%), Postives = 50/59 (84.75%), Query Frame = 0


Query: 1   MVQESVEELQPEFEQLQLEFDDVFNMSAKLPPMRQVDHRIQLKEDTDPINVRSYRYPHA 60
           +V +SVE+ QPEFEQLQ EFDD+F M   LPPMRQ++HRIQLKE TDPINVR YRYPHA
Sbjct: 126 VVTDSVEDYQPEFEQLQQEFDDIFEMPDDLPPMRQINHRIQLKEGTDPINVRPYRYPHA 184

[Close]

BLAST of CsaV3_5G014340 vs. ExPASy TrEMBL
Match: A0A5D3C316 (Putative retroelement pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold98G002710 PE=4 SV=1)

HSP 1 Score: 102.4 bits (254), Expect = 6.5e-19
Identity = 47/59 (79.66%), Postives = 55/59 (93.22%), Query Frame = 0


Query: 1   MVQESVEELQPEFEQLQLEFDDVFNMSAKLPPMRQVDHRIQLKEDTDPINVRSYRYPHA 60
           +++ESVEEL+P+FEQL+L+F D+FNM AKLPPMRQVDHRIQLKE TDPINVR YRYPHA
Sbjct: 53  IIKESVEELRPKFEQLELQFIDIFNMPAKLPPMRQVDHRIQLKEGTDPINVRPYRYPHA 111

[Close]

BLAST of CsaV3_5G014340 vs. ExPASy TrEMBL
Match: A0A5A7V5G0 (Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold325G001010 PE=4 SV=1)

HSP 1 Score: 96.7 bits (239), Expect = 3.6e-17
Identity = 44/59 (74.58%), Postives = 51/59 (86.44%), Query Frame = 0


Query: 1   MVQESVEELQPEFEQLQLEFDDVFNMSAKLPPMRQVDHRIQLKEDTDPINVRSYRYPHA 60
           +V +SVE+ QPEFEQLQ EF D+F+M  +LPPMRQ+DHRIQLKE TDPINVR YRYPHA
Sbjct: 322 VVTDSVEDFQPEFEQLQQEFSDIFDMPDRLPPMRQIDHRIQLKEGTDPINVRPYRYPHA 380

[Close]

BLAST of CsaV3_5G014340 vs. ExPASy TrEMBL
Match: A0A5A7UWA7 (Pleiotropic drug resistance protein 1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold274G001530 PE=4 SV=1)

HSP 1 Score: 95.1 bits (235), Expect = 1.0e-16
Identity = 44/59 (74.58%), Postives = 50/59 (84.75%), Query Frame = 0


Query: 1   MVQESVEELQPEFEQLQLEFDDVFNMSAKLPPMRQVDHRIQLKEDTDPINVRSYRYPHA 60
           +V +SVE+ QPEFEQLQ EFDD+F M   LPPMRQ++HRIQLKE TDPINVR YRYPHA
Sbjct: 85  VVTDSVEDYQPEFEQLQQEFDDIFEMPDDLPPMRQINHRIQLKEGTDPINVRPYRYPHA 143

[Close]

BLAST of CsaV3_5G014340 vs. ExPASy TrEMBL
Match: A0A5D3BIM8 (Pleiotropic drug resistance protein 1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold350G001530 PE=4 SV=1)

HSP 1 Score: 95.1 bits (235), Expect = 1.0e-16
Identity = 44/59 (74.58%), Postives = 50/59 (84.75%), Query Frame = 0


Query: 1   MVQESVEELQPEFEQLQLEFDDVFNMSAKLPPMRQVDHRIQLKEDTDPINVRSYRYPHA 60
           +V +SVE+ QPEFEQLQ EFDD+F M   LPPMRQ++HRIQLKE TDPINVR YRYPHA
Sbjct: 126 VVTDSVEDYQPEFEQLQQEFDDIFEMPDDLPPMRQINHRIQLKEGTDPINVRPYRYPHA 184

[Close]

BLAST of CsaV3_5G014340 vs. ExPASy TrEMBL
Match: A0A5D3CD46 (Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold648G00290 PE=4 SV=1)

HSP 1 Score: 93.6 bits (231), Expect = 3.0e-16
Identity = 43/59 (72.88%), Postives = 54/59 (91.53%), Query Frame = 0


Query: 1  MVQESVEELQPEFEQLQLEFDDVFNMSAKLPPMRQVDHRIQLKEDTDPINVRSYRYPHA 60
          +V+ESVEEL+PEFEQL+LEF ++FN+ ++LPPMRQVDHRIQLKE T+PINVR Y +PHA
Sbjct: 11 IVKESVEELRPEFEQLELEFANIFNIPSELPPMRQVDHRIQLKEGTNPINVRLYHHPHA 69

The following BLAST results are available for this feature:

BLAST of CsaV3_5G014340 vs. NCBI nr


Match Name	E-value	Identity	Description
KAE8648175.1	2.1e-24	100.00	hypothetical protein Csa_018448 [Cucumis sativus]	[more]
TYK05775.1	1.3e-18	79.66	putative retroelement pol polyprotein [Cucumis melo var. makuwa]	[more]
KAA0062470.1	7.4e-17	74.58	Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa] >TYK27412.1 Ty3/gyp...	[more]
KAA0057859.1	2.2e-16	74.58	pleiotropic drug resistance protein 1-like [Cucumis melo var. makuwa]	[more]
TYJ98541.1	2.2e-16	74.58	pleiotropic drug resistance protein 1-like [Cucumis melo var. makuwa]	[more]

BLAST of CsaV3_5G014340 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CsaV3_5G014340 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3C316	6.5e-19	79.66	Putative retroelement pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=...	[more]
A0A5A7V5G0	3.6e-17	74.58	Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]
A0A5A7UWA7	1.0e-16	74.58	Pleiotropic drug resistance protein 1-like OS=Cucumis melo var. makuwa OX=119469...	[more]
A0A5D3BIM8	1.0e-16	74.58	Pleiotropic drug resistance protein 1-like OS=Cucumis melo var. makuwa OX=119469...	[more]
A0A5D3CD46	3.0e-16	72.88	Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]

BLAST of CsaV3_5G014340 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_5G014340.1	CsaV3_5G014340.1	mRNA