CsaV3_4G009700 (gene) Cucumber (Chinese Long) v3

Overview


Name	CsaV3_4G009700
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Description	Unknown protein
Location	chr4: 7456130 .. 7456372 (-)
RNA-Seq Expression	CsaV3_4G009700
Synteny	CsaV3_4G009700

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAATCAAAAAGCAAAAAATGATGGGGAGATTAGTGAAGCTAGGAGGATCGAAGCACAAGGAGGAGCAATTGTTCGTTTAACTCAAGTAATTAATGACTTGACAGATCGATTAGATAGGATGAATGTAGCATTAAGGAATCGTCACCAAGGGGAAGTCTTGAATGAAGGAGTTGAAAATGAAAAGGATGAAGATAATGAAACTCTTTTAGCCAGACAAAATCCAACAGAGAGGAGAGTTTAG

mRNA sequence

ATGAATCAAAAAGCAAAAAATGATGGGGAGATTAGTGAAGCTAGGAGGATCGAAGCACAAGGAGGAGCAATTGTTCGTTTAACTCAAGTAATTAATGACTTGACAGATCGATTAGATAGGATGAATGTAGCATTAAGGAATCGTCACCAAGGGGAAGTCTTGAATGAAGGAGTTGAAAATGAAAAGGATGAAGATAATGAAACTCTTTTAGCCAGACAAAATCCAACAGAGAGGAGAGTTTAG

Coding sequence (CDS)

ATGAATCAAAAAGCAAAAAATGATGGGGAGATTAGTGAAGCTAGGAGGATCGAAGCACAAGGAGGAGCAATTGTTCGTTTAACTCAAGTAATTAATGACTTGACAGATCGATTAGATAGGATGAATGTAGCATTAAGGAATCGTCACCAAGGGGAAGTCTTGAATGAAGGAGTTGAAAATGAAAAGGATGAAGATAATGAAACTCTTTTAGCCAGACAAAATCCAACAGAGAGGAGAGTTTAG

Protein sequence

MNQKAKNDGEISEARRIEAQGGAIVRLTQVINDLTDRLDRMNVALRNRHQGEVLNEGVENEKDEDNETLLARQNPTERRV*

Homology

[Close]

BLAST of CsaV3_4G009700 vs. NCBI nr
Match: KGN53741.1 (hypothetical protein Csa_015371 [Cucumis sativus])

HSP 1 Score: 154.8 bits (390), Expect = 3.1e-34
Identity = 80/80 (100.00%), Postives = 80/80 (100.00%), Query Frame = 0


Query: 1  MNQKAKNDGEISEARRIEAQGGAIVRLTQVINDLTDRLDRMNVALRNRHQGEVLNEGVEN 60
          MNQKAKNDGEISEARRIEAQGGAIVRLTQVINDLTDRLDRMNVALRNRHQGEVLNEGVEN
Sbjct: 1  MNQKAKNDGEISEARRIEAQGGAIVRLTQVINDLTDRLDRMNVALRNRHQGEVLNEGVEN 60

Query: 61 EKDEDNETLLARQNPTERRV 81
          EKDEDNETLLARQNPTERRV
Sbjct: 61 EKDEDNETLLARQNPTERRV 80

[Close]

BLAST of CsaV3_4G009700 vs. NCBI nr
Match: KGN47250.1 (hypothetical protein Csa_016986 [Cucumis sativus])

HSP 1 Score: 133.7 bits (335), Expect = 7.4e-28
Identity = 69/80 (86.25%), Postives = 74/80 (92.50%), Query Frame = 0


Query: 1  MNQKAKNDGEISEARRIEAQGGAIVRLTQVINDLTDRLDRMNVALRNRHQGEVLNEGVEN 60
          MN+KAKNDG+ISEA+RIEAQGGAIVRLTQVINDLT+RLDRM VALRN HQGEVLNEGVEN
Sbjct: 1  MNKKAKNDGKISEAKRIEAQGGAIVRLTQVINDLTNRLDRMEVALRNHHQGEVLNEGVEN 60

Query: 61 EKDEDNETLLARQNPTERRV 81
          E+DEDNET LA QNP  RRV
Sbjct: 61 EEDEDNETFLAGQNPRGRRV 80

[Close]

BLAST of CsaV3_4G009700 vs. NCBI nr
Match: KAE8646857.1 (hypothetical protein Csa_020829, partial [Cucumis sativus])

HSP 1 Score: 132.5 bits (332), Expect = 1.6e-27
Identity = 70/80 (87.50%), Postives = 73/80 (91.25%), Query Frame = 0


Query: 1  MNQKAKNDGEISEARRIEAQGGAIVRLTQVINDLTDRLDRMNVALRNRHQGEVLNEGVEN 60
          MNQK KN GEISEARRIEAQGGAIVRLTQVINDLTDRLDR+ VALRNRHQG+VLNEGVEN
Sbjct: 1  MNQKTKNSGEISEARRIEAQGGAIVRLTQVINDLTDRLDRIEVALRNRHQGQVLNEGVEN 60

Query: 61 EKDEDNETLLARQNPTERRV 81
          E+DEDNETLLA QN   RRV
Sbjct: 61 EEDEDNETLLAIQNLRGRRV 80

[Close]

BLAST of CsaV3_4G009700 vs. NCBI nr
Match: XP_023534142.1 (uncharacterized protein LOC111795765 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 73.9 bits (180), Expect = 6.9e-10
Identity = 46/76 (60.53%), Postives = 54/76 (71.05%), Query Frame = 0


Query: 1  MNQKAKNDGEISEARRIEAQGGAIVRLTQVINDLTDRLDRMNVALRNRHQGEV-LNEGVE 60
          MNQ   N GEI+EAR  EAQ G I RL QVI+ LTDR++R+ +AL N    EV LNEGVE
Sbjct: 1  MNQDGGNGGEINEARWREAQVGTITRLNQVISTLTDRMERIEIALGNLQGREVLLNEGVE 60

Query: 61 NEKDEDNETLLARQNP 76
          NE+D DN TLLA  +P
Sbjct: 61 NEED-DNVTLLAGHSP 75

[Close]

BLAST of CsaV3_4G009700 vs. NCBI nr
Match: XP_022925325.1 (uncharacterized protein LOC111432615 [Cucurbita moschata])

HSP 1 Score: 73.6 bits (179), Expect = 9.1e-10
Identity = 46/76 (60.53%), Postives = 54/76 (71.05%), Query Frame = 0


Query: 1  MNQKAKNDGEISEARRIEAQGGAIVRLTQVINDLTDRLDRMNVALRNRHQGEV-LNEGVE 60
          MNQ   N GEI+EAR  EAQ G I RL QVI+ LTDR++R+ +AL N    EV LNEGVE
Sbjct: 1  MNQDEGNGGEINEARWREAQVGTITRLNQVISTLTDRMERIQIALGNLQGREVLLNEGVE 60

Query: 61 NEKDEDNETLLARQNP 76
          NE+D DN TLLA  +P
Sbjct: 61 NEED-DNVTLLAGHSP 75

[Close]

BLAST of CsaV3_4G009700 vs. ExPASy TrEMBL
Match: A0A0A0L0S3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G114220 PE=4 SV=1)

HSP 1 Score: 154.8 bits (390), Expect = 1.5e-34
Identity = 80/80 (100.00%), Postives = 80/80 (100.00%), Query Frame = 0


Query: 1  MNQKAKNDGEISEARRIEAQGGAIVRLTQVINDLTDRLDRMNVALRNRHQGEVLNEGVEN 60
          MNQKAKNDGEISEARRIEAQGGAIVRLTQVINDLTDRLDRMNVALRNRHQGEVLNEGVEN
Sbjct: 1  MNQKAKNDGEISEARRIEAQGGAIVRLTQVINDLTDRLDRMNVALRNRHQGEVLNEGVEN 60

Query: 61 EKDEDNETLLARQNPTERRV 81
          EKDEDNETLLARQNPTERRV
Sbjct: 61 EKDEDNETLLARQNPTERRV 80

[Close]

BLAST of CsaV3_4G009700 vs. ExPASy TrEMBL
Match: A0A0A0KC00 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G235580 PE=4 SV=1)

HSP 1 Score: 133.7 bits (335), Expect = 3.6e-28
Identity = 69/80 (86.25%), Postives = 74/80 (92.50%), Query Frame = 0


Query: 1  MNQKAKNDGEISEARRIEAQGGAIVRLTQVINDLTDRLDRMNVALRNRHQGEVLNEGVEN 60
          MN+KAKNDG+ISEA+RIEAQGGAIVRLTQVINDLT+RLDRM VALRN HQGEVLNEGVEN
Sbjct: 1  MNKKAKNDGKISEAKRIEAQGGAIVRLTQVINDLTNRLDRMEVALRNHHQGEVLNEGVEN 60

Query: 61 EKDEDNETLLARQNPTERRV 81
          E+DEDNET LA QNP  RRV
Sbjct: 61 EEDEDNETFLAGQNPRGRRV 80

[Close]

BLAST of CsaV3_4G009700 vs. ExPASy TrEMBL
Match: A0A6J1EHL9 (uncharacterized protein LOC111432615 OS=Cucurbita moschata OX=3662 GN=LOC111432615 PE=4 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 4.4e-10
Identity = 46/76 (60.53%), Postives = 54/76 (71.05%), Query Frame = 0


Query: 1  MNQKAKNDGEISEARRIEAQGGAIVRLTQVINDLTDRLDRMNVALRNRHQGEV-LNEGVE 60
          MNQ   N GEI+EAR  EAQ G I RL QVI+ LTDR++R+ +AL N    EV LNEGVE
Sbjct: 1  MNQDEGNGGEINEARWREAQVGTITRLNQVISTLTDRMERIQIALGNLQGREVLLNEGVE 60

Query: 61 NEKDEDNETLLARQNP 76
          NE+D DN TLLA  +P
Sbjct: 61 NEED-DNVTLLAGHSP 75

[Close]

BLAST of CsaV3_4G009700 vs. ExPASy TrEMBL
Match: A0A6J1ETN1 (uncharacterized protein LOC111436410 OS=Cucurbita moschata OX=3662 GN=LOC111436410 PE=4 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 2.4e-08
Identity = 44/76 (57.89%), Postives = 52/76 (68.42%), Query Frame = 0


Query: 1  MNQKAKNDGEISEARRIEAQGGAIVRLTQVINDLTDRLDRMNVALRNRHQGEV-LNEGVE 60
          MNQ   N  EI+EAR  EAQ G I  L QVI+ LTDR++R+ +AL N    EV LNEGVE
Sbjct: 1  MNQDGGNGREINEARWREAQVGTITCLNQVISTLTDRMERIEIALGNLQGREVLLNEGVE 60

Query: 61 NEKDEDNETLLARQNP 76
          NE+D DN TLLA  +P
Sbjct: 61 NEED-DNVTLLAGHSP 75

[Close]

BLAST of CsaV3_4G009700 vs. ExPASy TrEMBL
Match: A0A5A7UDQ9 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold27G00150 PE=4 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 5.9e-07
Identity = 31/40 (77.50%), Postives = 34/40 (85.00%), Query Frame = 0


Query: 41 MNVALRNRHQGEVLNEGVENEKDEDNETLLARQNPTERRV 81
          M VALRN HQGEVLNEGVEN++DEDNET+L  QNP  RRV
Sbjct: 1  MKVALRNHHQGEVLNEGVENKEDEDNETILVGQNPKGRRV 40

The following BLAST results are available for this feature:

BLAST of CsaV3_4G009700 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN53741.1	3.1e-34	100.00	hypothetical protein Csa_015371 [Cucumis sativus]	[more]
KGN47250.1	7.4e-28	86.25	hypothetical protein Csa_016986 [Cucumis sativus]	[more]
KAE8646857.1	1.6e-27	87.50	hypothetical protein Csa_020829, partial [Cucumis sativus]	[more]
XP_023534142.1	6.9e-10	60.53	uncharacterized protein LOC111795765 [Cucurbita pepo subsp. pepo]	[more]
XP_022925325.1	9.1e-10	60.53	uncharacterized protein LOC111432615 [Cucurbita moschata]	[more]

BLAST of CsaV3_4G009700 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CsaV3_4G009700 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L0S3	1.5e-34	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G114220 PE=4 SV=1	[more]
A0A0A0KC00	3.6e-28	86.25	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G235580 PE=4 SV=1	[more]
A0A6J1EHL9	4.4e-10	60.53	uncharacterized protein LOC111432615 OS=Cucurbita moschata OX=3662 GN=LOC1114326...	[more]
A0A6J1ETN1	2.4e-08	57.89	uncharacterized protein LOC111436410 OS=Cucurbita moschata OX=3662 GN=LOC1114364...	[more]
A0A5A7UDQ9	5.9e-07	77.50	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]

BLAST of CsaV3_4G009700 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 24..44
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 64..80
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 50..80

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_4G009700.1	CsaV3_4G009700.1	mRNA