Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAATCAAAAAGCAAAAAATGATGGGGAGATTAGTGAAGCTAGGAGGATCGAAGCACAAGGAGGAGCAATTGTTCGTTTAACTCAAGTAATTAATGACTTGACAGATCGATTAGATAGGATGAATGTAGCATTAAGGAATCGTCACCAAGGGGAAGTCTTGAATGAAGGAGTTGAAAATGAAAAGGATGAAGATAATGAAACTCTTTTAGCCAGACAAAATCCAACAGAGAGGAGAGTTTAG
mRNA sequence
ATGAATCAAAAAGCAAAAAATGATGGGGAGATTAGTGAAGCTAGGAGGATCGAAGCACAAGGAGGAGCAATTGTTCGTTTAACTCAAGTAATTAATGACTTGACAGATCGATTAGATAGGATGAATGTAGCATTAAGGAATCGTCACCAAGGGGAAGTCTTGAATGAAGGAGTTGAAAATGAAAAGGATGAAGATAATGAAACTCTTTTAGCCAGACAAAATCCAACAGAGAGGAGAGTTTAG
Coding sequence (CDS)
ATGAATCAAAAAGCAAAAAATGATGGGGAGATTAGTGAAGCTAGGAGGATCGAAGCACAAGGAGGAGCAATTGTTCGTTTAACTCAAGTAATTAATGACTTGACAGATCGATTAGATAGGATGAATGTAGCATTAAGGAATCGTCACCAAGGGGAAGTCTTGAATGAAGGAGTTGAAAATGAAAAGGATGAAGATAATGAAACTCTTTTAGCCAGACAAAATCCAACAGAGAGGAGAGTTTAG
Protein sequence
MNQKAKNDGEISEARRIEAQGGAIVRLTQVINDLTDRLDRMNVALRNRHQGEVLNEGVENEKDEDNETLLARQNPTERRV*
Homology
BLAST of CsaV3_4G009700 vs. NCBI nr
Match:
KGN53741.1 (hypothetical protein Csa_015371 [Cucumis sativus])
HSP 1 Score: 154.8 bits (390), Expect = 3.1e-34
Identity = 80/80 (100.00%), Postives = 80/80 (100.00%), Query Frame = 0
Query: 1 MNQKAKNDGEISEARRIEAQGGAIVRLTQVINDLTDRLDRMNVALRNRHQGEVLNEGVEN 60
MNQKAKNDGEISEARRIEAQGGAIVRLTQVINDLTDRLDRMNVALRNRHQGEVLNEGVEN
Sbjct: 1 MNQKAKNDGEISEARRIEAQGGAIVRLTQVINDLTDRLDRMNVALRNRHQGEVLNEGVEN 60
Query: 61 EKDEDNETLLARQNPTERRV 81
EKDEDNETLLARQNPTERRV
Sbjct: 61 EKDEDNETLLARQNPTERRV 80
BLAST of CsaV3_4G009700 vs. NCBI nr
Match:
KGN47250.1 (hypothetical protein Csa_016986 [Cucumis sativus])
HSP 1 Score: 133.7 bits (335), Expect = 7.4e-28
Identity = 69/80 (86.25%), Postives = 74/80 (92.50%), Query Frame = 0
Query: 1 MNQKAKNDGEISEARRIEAQGGAIVRLTQVINDLTDRLDRMNVALRNRHQGEVLNEGVEN 60
MN+KAKNDG+ISEA+RIEAQGGAIVRLTQVINDLT+RLDRM VALRN HQGEVLNEGVEN
Sbjct: 1 MNKKAKNDGKISEAKRIEAQGGAIVRLTQVINDLTNRLDRMEVALRNHHQGEVLNEGVEN 60
Query: 61 EKDEDNETLLARQNPTERRV 81
E+DEDNET LA QNP RRV
Sbjct: 61 EEDEDNETFLAGQNPRGRRV 80
BLAST of CsaV3_4G009700 vs. NCBI nr
Match:
KAE8646857.1 (hypothetical protein Csa_020829, partial [Cucumis sativus])
HSP 1 Score: 132.5 bits (332), Expect = 1.6e-27
Identity = 70/80 (87.50%), Postives = 73/80 (91.25%), Query Frame = 0
Query: 1 MNQKAKNDGEISEARRIEAQGGAIVRLTQVINDLTDRLDRMNVALRNRHQGEVLNEGVEN 60
MNQK KN GEISEARRIEAQGGAIVRLTQVINDLTDRLDR+ VALRNRHQG+VLNEGVEN
Sbjct: 1 MNQKTKNSGEISEARRIEAQGGAIVRLTQVINDLTDRLDRIEVALRNRHQGQVLNEGVEN 60
Query: 61 EKDEDNETLLARQNPTERRV 81
E+DEDNETLLA QN RRV
Sbjct: 61 EEDEDNETLLAIQNLRGRRV 80
BLAST of CsaV3_4G009700 vs. NCBI nr
Match:
XP_023534142.1 (uncharacterized protein LOC111795765 [Cucurbita pepo subsp. pepo])
HSP 1 Score: 73.9 bits (180), Expect = 6.9e-10
Identity = 46/76 (60.53%), Postives = 54/76 (71.05%), Query Frame = 0
Query: 1 MNQKAKNDGEISEARRIEAQGGAIVRLTQVINDLTDRLDRMNVALRNRHQGEV-LNEGVE 60
MNQ N GEI+EAR EAQ G I RL QVI+ LTDR++R+ +AL N EV LNEGVE
Sbjct: 1 MNQDGGNGGEINEARWREAQVGTITRLNQVISTLTDRMERIEIALGNLQGREVLLNEGVE 60
Query: 61 NEKDEDNETLLARQNP 76
NE+D DN TLLA +P
Sbjct: 61 NEED-DNVTLLAGHSP 75
BLAST of CsaV3_4G009700 vs. NCBI nr
Match:
XP_022925325.1 (uncharacterized protein LOC111432615 [Cucurbita moschata])
HSP 1 Score: 73.6 bits (179), Expect = 9.1e-10
Identity = 46/76 (60.53%), Postives = 54/76 (71.05%), Query Frame = 0
Query: 1 MNQKAKNDGEISEARRIEAQGGAIVRLTQVINDLTDRLDRMNVALRNRHQGEV-LNEGVE 60
MNQ N GEI+EAR EAQ G I RL QVI+ LTDR++R+ +AL N EV LNEGVE
Sbjct: 1 MNQDEGNGGEINEARWREAQVGTITRLNQVISTLTDRMERIQIALGNLQGREVLLNEGVE 60
Query: 61 NEKDEDNETLLARQNP 76
NE+D DN TLLA +P
Sbjct: 61 NEED-DNVTLLAGHSP 75
BLAST of CsaV3_4G009700 vs. ExPASy TrEMBL
Match:
A0A0A0L0S3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G114220 PE=4 SV=1)
HSP 1 Score: 154.8 bits (390), Expect = 1.5e-34
Identity = 80/80 (100.00%), Postives = 80/80 (100.00%), Query Frame = 0
Query: 1 MNQKAKNDGEISEARRIEAQGGAIVRLTQVINDLTDRLDRMNVALRNRHQGEVLNEGVEN 60
MNQKAKNDGEISEARRIEAQGGAIVRLTQVINDLTDRLDRMNVALRNRHQGEVLNEGVEN
Sbjct: 1 MNQKAKNDGEISEARRIEAQGGAIVRLTQVINDLTDRLDRMNVALRNRHQGEVLNEGVEN 60
Query: 61 EKDEDNETLLARQNPTERRV 81
EKDEDNETLLARQNPTERRV
Sbjct: 61 EKDEDNETLLARQNPTERRV 80
BLAST of CsaV3_4G009700 vs. ExPASy TrEMBL
Match:
A0A0A0KC00 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G235580 PE=4 SV=1)
HSP 1 Score: 133.7 bits (335), Expect = 3.6e-28
Identity = 69/80 (86.25%), Postives = 74/80 (92.50%), Query Frame = 0
Query: 1 MNQKAKNDGEISEARRIEAQGGAIVRLTQVINDLTDRLDRMNVALRNRHQGEVLNEGVEN 60
MN+KAKNDG+ISEA+RIEAQGGAIVRLTQVINDLT+RLDRM VALRN HQGEVLNEGVEN
Sbjct: 1 MNKKAKNDGKISEAKRIEAQGGAIVRLTQVINDLTNRLDRMEVALRNHHQGEVLNEGVEN 60
Query: 61 EKDEDNETLLARQNPTERRV 81
E+DEDNET LA QNP RRV
Sbjct: 61 EEDEDNETFLAGQNPRGRRV 80
BLAST of CsaV3_4G009700 vs. ExPASy TrEMBL
Match:
A0A6J1EHL9 (uncharacterized protein LOC111432615 OS=Cucurbita moschata OX=3662 GN=LOC111432615 PE=4 SV=1)
HSP 1 Score: 73.6 bits (179), Expect = 4.4e-10
Identity = 46/76 (60.53%), Postives = 54/76 (71.05%), Query Frame = 0
Query: 1 MNQKAKNDGEISEARRIEAQGGAIVRLTQVINDLTDRLDRMNVALRNRHQGEV-LNEGVE 60
MNQ N GEI+EAR EAQ G I RL QVI+ LTDR++R+ +AL N EV LNEGVE
Sbjct: 1 MNQDEGNGGEINEARWREAQVGTITRLNQVISTLTDRMERIQIALGNLQGREVLLNEGVE 60
Query: 61 NEKDEDNETLLARQNP 76
NE+D DN TLLA +P
Sbjct: 61 NEED-DNVTLLAGHSP 75
BLAST of CsaV3_4G009700 vs. ExPASy TrEMBL
Match:
A0A6J1ETN1 (uncharacterized protein LOC111436410 OS=Cucurbita moschata OX=3662 GN=LOC111436410 PE=4 SV=1)
HSP 1 Score: 67.8 bits (164), Expect = 2.4e-08
Identity = 44/76 (57.89%), Postives = 52/76 (68.42%), Query Frame = 0
Query: 1 MNQKAKNDGEISEARRIEAQGGAIVRLTQVINDLTDRLDRMNVALRNRHQGEV-LNEGVE 60
MNQ N EI+EAR EAQ G I L QVI+ LTDR++R+ +AL N EV LNEGVE
Sbjct: 1 MNQDGGNGREINEARWREAQVGTITCLNQVISTLTDRMERIEIALGNLQGREVLLNEGVE 60
Query: 61 NEKDEDNETLLARQNP 76
NE+D DN TLLA +P
Sbjct: 61 NEED-DNVTLLAGHSP 75
BLAST of CsaV3_4G009700 vs. ExPASy TrEMBL
Match:
A0A5A7UDQ9 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold27G00150 PE=4 SV=1)
HSP 1 Score: 63.2 bits (152), Expect = 5.9e-07
Identity = 31/40 (77.50%), Postives = 34/40 (85.00%), Query Frame = 0
Query: 41 MNVALRNRHQGEVLNEGVENEKDEDNETLLARQNPTERRV 81
M VALRN HQGEVLNEGVEN++DEDNET+L QNP RRV
Sbjct: 1 MKVALRNHHQGEVLNEGVENKEDEDNETILVGQNPKGRRV 40
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| KGN53741.1 | 3.1e-34 | 100.00 | hypothetical protein Csa_015371 [Cucumis sativus] | [more] |
| KGN47250.1 | 7.4e-28 | 86.25 | hypothetical protein Csa_016986 [Cucumis sativus] | [more] |
| KAE8646857.1 | 1.6e-27 | 87.50 | hypothetical protein Csa_020829, partial [Cucumis sativus] | [more] |
| XP_023534142.1 | 6.9e-10 | 60.53 | uncharacterized protein LOC111795765 [Cucurbita pepo subsp. pepo] | [more] |
| XP_022925325.1 | 9.1e-10 | 60.53 | uncharacterized protein LOC111432615 [Cucurbita moschata] | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| Match Name | E-value | Identity | Description | |
|---|
| A0A0A0L0S3 | 1.5e-34 | 100.00 | Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G114220 PE=4 SV=1 | [more] |
| A0A0A0KC00 | 3.6e-28 | 86.25 | Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G235580 PE=4 SV=1 | [more] |
| A0A6J1EHL9 | 4.4e-10 | 60.53 | uncharacterized protein LOC111432615 OS=Cucurbita moschata OX=3662 GN=LOC1114326... | [more] |
| A0A6J1ETN1 | 2.4e-08 | 57.89 | uncharacterized protein LOC111436410 OS=Cucurbita moschata OX=3662 GN=LOC1114364... | [more] |
| A0A5A7UDQ9 | 5.9e-07 | 77.50 | Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... | [more] |
| Match Name | E-value | Identity | Description | |
|---|
