CsaV3_4G009700 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_4G009700
Typegene
OrganismCucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr4: 7456130 .. 7456372 (-)
RNA-Seq ExpressionCsaV3_4G009700
SyntenyCsaV3_4G009700
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAATCAAAAAGCAAAAAATGATGGGGAGATTAGTGAAGCTAGGAGGATCGAAGCACAAGGAGGAGCAATTGTTCGTTTAACTCAAGTAATTAATGACTTGACAGATCGATTAGATAGGATGAATGTAGCATTAAGGAATCGTCACCAAGGGGAAGTCTTGAATGAAGGAGTTGAAAATGAAAAGGATGAAGATAATGAAACTCTTTTAGCCAGACAAAATCCAACAGAGAGGAGAGTTTAG

mRNA sequence

ATGAATCAAAAAGCAAAAAATGATGGGGAGATTAGTGAAGCTAGGAGGATCGAAGCACAAGGAGGAGCAATTGTTCGTTTAACTCAAGTAATTAATGACTTGACAGATCGATTAGATAGGATGAATGTAGCATTAAGGAATCGTCACCAAGGGGAAGTCTTGAATGAAGGAGTTGAAAATGAAAAGGATGAAGATAATGAAACTCTTTTAGCCAGACAAAATCCAACAGAGAGGAGAGTTTAG

Coding sequence (CDS)

ATGAATCAAAAAGCAAAAAATGATGGGGAGATTAGTGAAGCTAGGAGGATCGAAGCACAAGGAGGAGCAATTGTTCGTTTAACTCAAGTAATTAATGACTTGACAGATCGATTAGATAGGATGAATGTAGCATTAAGGAATCGTCACCAAGGGGAAGTCTTGAATGAAGGAGTTGAAAATGAAAAGGATGAAGATAATGAAACTCTTTTAGCCAGACAAAATCCAACAGAGAGGAGAGTTTAG

Protein sequence

MNQKAKNDGEISEARRIEAQGGAIVRLTQVINDLTDRLDRMNVALRNRHQGEVLNEGVENEKDEDNETLLARQNPTERRV*
Homology
BLAST of CsaV3_4G009700 vs. NCBI nr
Match: KGN53741.1 (hypothetical protein Csa_015371 [Cucumis sativus])

HSP 1 Score: 154.8 bits (390), Expect = 3.1e-34
Identity = 80/80 (100.00%), Postives = 80/80 (100.00%), Query Frame = 0

Query: 1  MNQKAKNDGEISEARRIEAQGGAIVRLTQVINDLTDRLDRMNVALRNRHQGEVLNEGVEN 60
          MNQKAKNDGEISEARRIEAQGGAIVRLTQVINDLTDRLDRMNVALRNRHQGEVLNEGVEN
Sbjct: 1  MNQKAKNDGEISEARRIEAQGGAIVRLTQVINDLTDRLDRMNVALRNRHQGEVLNEGVEN 60

Query: 61 EKDEDNETLLARQNPTERRV 81
          EKDEDNETLLARQNPTERRV
Sbjct: 61 EKDEDNETLLARQNPTERRV 80

BLAST of CsaV3_4G009700 vs. NCBI nr
Match: KGN47250.1 (hypothetical protein Csa_016986 [Cucumis sativus])

HSP 1 Score: 133.7 bits (335), Expect = 7.4e-28
Identity = 69/80 (86.25%), Postives = 74/80 (92.50%), Query Frame = 0

Query: 1  MNQKAKNDGEISEARRIEAQGGAIVRLTQVINDLTDRLDRMNVALRNRHQGEVLNEGVEN 60
          MN+KAKNDG+ISEA+RIEAQGGAIVRLTQVINDLT+RLDRM VALRN HQGEVLNEGVEN
Sbjct: 1  MNKKAKNDGKISEAKRIEAQGGAIVRLTQVINDLTNRLDRMEVALRNHHQGEVLNEGVEN 60

Query: 61 EKDEDNETLLARQNPTERRV 81
          E+DEDNET LA QNP  RRV
Sbjct: 61 EEDEDNETFLAGQNPRGRRV 80

BLAST of CsaV3_4G009700 vs. NCBI nr
Match: KAE8646857.1 (hypothetical protein Csa_020829, partial [Cucumis sativus])

HSP 1 Score: 132.5 bits (332), Expect = 1.6e-27
Identity = 70/80 (87.50%), Postives = 73/80 (91.25%), Query Frame = 0

Query: 1  MNQKAKNDGEISEARRIEAQGGAIVRLTQVINDLTDRLDRMNVALRNRHQGEVLNEGVEN 60
          MNQK KN GEISEARRIEAQGGAIVRLTQVINDLTDRLDR+ VALRNRHQG+VLNEGVEN
Sbjct: 1  MNQKTKNSGEISEARRIEAQGGAIVRLTQVINDLTDRLDRIEVALRNRHQGQVLNEGVEN 60

Query: 61 EKDEDNETLLARQNPTERRV 81
          E+DEDNETLLA QN   RRV
Sbjct: 61 EEDEDNETLLAIQNLRGRRV 80

BLAST of CsaV3_4G009700 vs. NCBI nr
Match: XP_023534142.1 (uncharacterized protein LOC111795765 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 73.9 bits (180), Expect = 6.9e-10
Identity = 46/76 (60.53%), Postives = 54/76 (71.05%), Query Frame = 0

Query: 1  MNQKAKNDGEISEARRIEAQGGAIVRLTQVINDLTDRLDRMNVALRNRHQGEV-LNEGVE 60
          MNQ   N GEI+EAR  EAQ G I RL QVI+ LTDR++R+ +AL N    EV LNEGVE
Sbjct: 1  MNQDGGNGGEINEARWREAQVGTITRLNQVISTLTDRMERIEIALGNLQGREVLLNEGVE 60

Query: 61 NEKDEDNETLLARQNP 76
          NE+D DN TLLA  +P
Sbjct: 61 NEED-DNVTLLAGHSP 75

BLAST of CsaV3_4G009700 vs. NCBI nr
Match: XP_022925325.1 (uncharacterized protein LOC111432615 [Cucurbita moschata])

HSP 1 Score: 73.6 bits (179), Expect = 9.1e-10
Identity = 46/76 (60.53%), Postives = 54/76 (71.05%), Query Frame = 0

Query: 1  MNQKAKNDGEISEARRIEAQGGAIVRLTQVINDLTDRLDRMNVALRNRHQGEV-LNEGVE 60
          MNQ   N GEI+EAR  EAQ G I RL QVI+ LTDR++R+ +AL N    EV LNEGVE
Sbjct: 1  MNQDEGNGGEINEARWREAQVGTITRLNQVISTLTDRMERIQIALGNLQGREVLLNEGVE 60

Query: 61 NEKDEDNETLLARQNP 76
          NE+D DN TLLA  +P
Sbjct: 61 NEED-DNVTLLAGHSP 75

BLAST of CsaV3_4G009700 vs. ExPASy TrEMBL
Match: A0A0A0L0S3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G114220 PE=4 SV=1)

HSP 1 Score: 154.8 bits (390), Expect = 1.5e-34
Identity = 80/80 (100.00%), Postives = 80/80 (100.00%), Query Frame = 0

Query: 1  MNQKAKNDGEISEARRIEAQGGAIVRLTQVINDLTDRLDRMNVALRNRHQGEVLNEGVEN 60
          MNQKAKNDGEISEARRIEAQGGAIVRLTQVINDLTDRLDRMNVALRNRHQGEVLNEGVEN
Sbjct: 1  MNQKAKNDGEISEARRIEAQGGAIVRLTQVINDLTDRLDRMNVALRNRHQGEVLNEGVEN 60

Query: 61 EKDEDNETLLARQNPTERRV 81
          EKDEDNETLLARQNPTERRV
Sbjct: 61 EKDEDNETLLARQNPTERRV 80

BLAST of CsaV3_4G009700 vs. ExPASy TrEMBL
Match: A0A0A0KC00 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G235580 PE=4 SV=1)

HSP 1 Score: 133.7 bits (335), Expect = 3.6e-28
Identity = 69/80 (86.25%), Postives = 74/80 (92.50%), Query Frame = 0

Query: 1  MNQKAKNDGEISEARRIEAQGGAIVRLTQVINDLTDRLDRMNVALRNRHQGEVLNEGVEN 60
          MN+KAKNDG+ISEA+RIEAQGGAIVRLTQVINDLT+RLDRM VALRN HQGEVLNEGVEN
Sbjct: 1  MNKKAKNDGKISEAKRIEAQGGAIVRLTQVINDLTNRLDRMEVALRNHHQGEVLNEGVEN 60

Query: 61 EKDEDNETLLARQNPTERRV 81
          E+DEDNET LA QNP  RRV
Sbjct: 61 EEDEDNETFLAGQNPRGRRV 80

BLAST of CsaV3_4G009700 vs. ExPASy TrEMBL
Match: A0A6J1EHL9 (uncharacterized protein LOC111432615 OS=Cucurbita moschata OX=3662 GN=LOC111432615 PE=4 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 4.4e-10
Identity = 46/76 (60.53%), Postives = 54/76 (71.05%), Query Frame = 0

Query: 1  MNQKAKNDGEISEARRIEAQGGAIVRLTQVINDLTDRLDRMNVALRNRHQGEV-LNEGVE 60
          MNQ   N GEI+EAR  EAQ G I RL QVI+ LTDR++R+ +AL N    EV LNEGVE
Sbjct: 1  MNQDEGNGGEINEARWREAQVGTITRLNQVISTLTDRMERIQIALGNLQGREVLLNEGVE 60

Query: 61 NEKDEDNETLLARQNP 76
          NE+D DN TLLA  +P
Sbjct: 61 NEED-DNVTLLAGHSP 75

BLAST of CsaV3_4G009700 vs. ExPASy TrEMBL
Match: A0A6J1ETN1 (uncharacterized protein LOC111436410 OS=Cucurbita moschata OX=3662 GN=LOC111436410 PE=4 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 2.4e-08
Identity = 44/76 (57.89%), Postives = 52/76 (68.42%), Query Frame = 0

Query: 1  MNQKAKNDGEISEARRIEAQGGAIVRLTQVINDLTDRLDRMNVALRNRHQGEV-LNEGVE 60
          MNQ   N  EI+EAR  EAQ G I  L QVI+ LTDR++R+ +AL N    EV LNEGVE
Sbjct: 1  MNQDGGNGREINEARWREAQVGTITCLNQVISTLTDRMERIEIALGNLQGREVLLNEGVE 60

Query: 61 NEKDEDNETLLARQNP 76
          NE+D DN TLLA  +P
Sbjct: 61 NEED-DNVTLLAGHSP 75

BLAST of CsaV3_4G009700 vs. ExPASy TrEMBL
Match: A0A5A7UDQ9 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold27G00150 PE=4 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 5.9e-07
Identity = 31/40 (77.50%), Postives = 34/40 (85.00%), Query Frame = 0

Query: 41 MNVALRNRHQGEVLNEGVENEKDEDNETLLARQNPTERRV 81
          M VALRN HQGEVLNEGVEN++DEDNET+L  QNP  RRV
Sbjct: 1  MKVALRNHHQGEVLNEGVENKEDEDNETILVGQNPKGRRV 40

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KGN53741.13.1e-34100.00hypothetical protein Csa_015371 [Cucumis sativus][more]
KGN47250.17.4e-2886.25hypothetical protein Csa_016986 [Cucumis sativus][more]
KAE8646857.11.6e-2787.50hypothetical protein Csa_020829, partial [Cucumis sativus][more]
XP_023534142.16.9e-1060.53uncharacterized protein LOC111795765 [Cucurbita pepo subsp. pepo][more]
XP_022925325.19.1e-1060.53uncharacterized protein LOC111432615 [Cucurbita moschata][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0L0S31.5e-34100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G114220 PE=4 SV=1[more]
A0A0A0KC003.6e-2886.25Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G235580 PE=4 SV=1[more]
A0A6J1EHL94.4e-1060.53uncharacterized protein LOC111432615 OS=Cucurbita moschata OX=3662 GN=LOC1114326... [more]
A0A6J1ETN12.4e-0857.89uncharacterized protein LOC111436410 OS=Cucurbita moschata OX=3662 GN=LOC1114364... [more]
A0A5A7UDQ95.9e-0777.50Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 24..44
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 64..80
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 50..80

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_4G009700.1CsaV3_4G009700.1mRNA