Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCGGATGAAAAGAAACATACCAATTTTAGTTGGAGAGGTCACGAAAAAAACGTGAAATAGCGACAAAATGGTCAATTGAATTACAAAGGTGAAGCCTCTAGTTATCACCAAAGACAATATCCCAAAAGACCACATCAACCACCTCAACGCCATGGCCACTACAACATTCCTAACCAAGCTTCTTCATCTTGTTCATTATCATCATCATTGGAAGCCCTTGTGCGCAAATATATGTGGAGGAATTATGCCTTTCTACAAAGCCAAGTCACATCTATTAAAAATCTAGAATTACAAATGGGGCAAATAACTAGTGACATCTCTGGGTGA
mRNA sequence
CGACAAAATGGTCAATTGAATTACAAAGGTGAAGCCTCTAGTTATCACCAAAGACAATATCCCAAAAGACCACATCAACCACCTCAACGCCATGGCCACTACAACATTCCTAACCAAGCTTCTTCATCTTGTTCATTATCATCATCATTGGAAGCCCTTGTGCGCAAATATATGTGGAGGAATTATGCCTTTCTACAAAGCCAAGTCACATCTATTAAAAATCTAGAATTACAAATGGGGCAAATAACTAGTGACATCTCTGGGTGA
Coding sequence (CDS)
CGACAAAATGGTCAATTGAATTACAAAGGTGAAGCCTCTAGTTATCACCAAAGACAATATCCCAAAAGACCACATCAACCACCTCAACGCCATGGCCACTACAACATTCCTAACCAAGCTTCTTCATCTTGTTCATTATCATCATCATTGGAAGCCCTTGTGCGCAAATATATGTGGAGGAATTATGCCTTTCTACAAAGCCAAGTCACATCTATTAAAAATCTAGAATTACAAATGGGGCAAATAACTAGTGACATCTCTGGGTGA
Protein sequence
RQNGQLNYKGEASSYHQRQYPKRPHQPPQRHGHYNIPNQASSSCSLSSSLEALVRKYMWRNYAFLQSQVTSIKNLELQMGQITSDISG*
Homology
BLAST of CsaV3_4G008630 vs. NCBI nr
Match:
KAE8649272.1 (hypothetical protein Csa_023796, partial [Cucumis sativus])
HSP 1 Score: 177.9 bits (450), Expect = 3.7e-41
Identity = 88/88 (100.00%), Postives = 88/88 (100.00%), Query Frame = 0
Query: 1 RQNGQLNYKGEASSYHQRQYPKRPHQPPQRHGHYNIPNQASSSCSLSSSLEALVRKYMWR 60
RQNGQLNYKGEASSYHQRQYPKRPHQPPQRHGHYNIPNQASSSCSLSSSLEALVRKYMWR
Sbjct: 1 RQNGQLNYKGEASSYHQRQYPKRPHQPPQRHGHYNIPNQASSSCSLSSSLEALVRKYMWR 60
Query: 61 NYAFLQSQVTSIKNLELQMGQITSDISG 89
NYAFLQSQVTSIKNLELQMGQITSDISG
Sbjct: 61 NYAFLQSQVTSIKNLELQMGQITSDISG 88
BLAST of CsaV3_4G008630 vs. NCBI nr
Match:
TYK27798.1 (hypothetical protein E5676_scaffold749G00200 [Cucumis melo var. makuwa])
HSP 1 Score: 75.9 bits (185), Expect = 2.0e-10
Identity = 47/86 (54.65%), Postives = 54/86 (62.79%), Query Frame = 0
Query: 4 GQLNYKGEASSYHQRQYPKRPHQ--PPQRHGHYNIPNQASSSCSLSSSLEALVRKYMWRN 63
GQ +Y G+AS Y QRQ+ RPH P Q+ N P S SSS+E L+R YM RN
Sbjct: 16 GQGSYHGKASGYRQRQHQDRPHHSTPQQQQATTNTP-------SFSSSMETLIRGYMKRN 75
Query: 64 YAFLQSQVTSIKNLELQMGQITSDIS 88
A LQSQ TSI+NLELQMGQI D S
Sbjct: 76 DALLQSQATSIRNLELQMGQIAIDFS 94
BLAST of CsaV3_4G008630 vs. NCBI nr
Match:
KAA0040852.1 (hypothetical protein E6C27_scaffold333G00770 [Cucumis melo var. makuwa] >TYK17828.1 hypothetical protein E5676_scaffold306G00800 [Cucumis melo var. makuwa])
HSP 1 Score: 63.5 bits (153), Expect = 1.0e-06
Identity = 40/83 (48.19%), Postives = 52/83 (62.65%), Query Frame = 0
Query: 7 NYKGEASSYHQRQYPKRPHQPPQRHGHYNIPNQASSSCSLS-SSLEALVRKYMWRNYAFL 66
NY+GEA + QR Y RPH +H QA+++ S SS+ AL+RKYM R AF+
Sbjct: 122 NYRGEAPDHRQRHY-DRPHYSAPQH------QQATTNTPSSFSSMVALLRKYMQRKDAFM 181
Query: 67 QSQVTSIKNLELQMGQITSDISG 89
QSQ TSI NLE+ +GQ+ D SG
Sbjct: 182 QSQTTSIINLEIHLGQLAKDFSG 197
BLAST of CsaV3_4G008630 vs. NCBI nr
Match:
XP_038882405.1 (uncharacterized protein LOC120073674 [Benincasa hispida])
HSP 1 Score: 55.1 bits (131), Expect = 3.7e-04
Identity = 33/79 (41.77%), Postives = 52/79 (65.82%), Query Frame = 0
Query: 8 YKGEASSYHQRQYPKRPHQPPQRHGHYNIPNQASSSCSLSSSLEALVRKYMWRNYAFLQS 67
+KG +HQ+ +PHQ ++ H +QASSS +L SSLEA +++Y+ +N A +QS
Sbjct: 193 HKGNPLGFHQQPQGHQPHQSRNQYNH----DQASSSNAL-SSLEAFLKEYIQKNDALIQS 252
Query: 68 QVTSIKNLELQMGQITSDI 87
Q TSI+ +ELQ+GQ + +
Sbjct: 253 QATSIRIVELQVGQFANGL 266
BLAST of CsaV3_4G008630 vs. NCBI nr
Match:
XP_038889363.1 (uncharacterized protein LOC120079279 [Benincasa hispida])
HSP 1 Score: 55.1 bits (131), Expect = 3.7e-04
Identity = 31/85 (36.47%), Postives = 58/85 (68.24%), Query Frame = 0
Query: 2 QNGQLNYKGEASSYHQRQYPKRPHQPPQRHGHYNIPNQASSSCSLSSSLEALVRKYMWRN 61
Q+ +G + +HQ Q + HQP + N+P+ +++S + SSSLE+L+++Y+ +N
Sbjct: 284 QSNNFENRGNSPPFHQNQ--NQGHQPQPQ----NLPSSSNTSAN-SSSLESLLKQYIEKN 343
Query: 62 YAFLQSQVTSIKNLELQMGQITSDI 87
+QSQV+SI+NLE+Q+GQ+ +++
Sbjct: 344 DVVMQSQVSSIRNLEIQVGQLATEL 361
BLAST of CsaV3_4G008630 vs. ExPASy TrEMBL
Match:
A0A5D3DWD5 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold749G00200 PE=4 SV=1)
HSP 1 Score: 75.9 bits (185), Expect = 9.7e-11
Identity = 47/86 (54.65%), Postives = 54/86 (62.79%), Query Frame = 0
Query: 4 GQLNYKGEASSYHQRQYPKRPHQ--PPQRHGHYNIPNQASSSCSLSSSLEALVRKYMWRN 63
GQ +Y G+AS Y QRQ+ RPH P Q+ N P S SSS+E L+R YM RN
Sbjct: 16 GQGSYHGKASGYRQRQHQDRPHHSTPQQQQATTNTP-------SFSSSMETLIRGYMKRN 75
Query: 64 YAFLQSQVTSIKNLELQMGQITSDIS 88
A LQSQ TSI+NLELQMGQI D S
Sbjct: 76 DALLQSQATSIRNLELQMGQIAIDFS 94
BLAST of CsaV3_4G008630 vs. ExPASy TrEMBL
Match:
A0A0A0KMN3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G055570 PE=4 SV=1)
HSP 1 Score: 72.8 bits (177), Expect = 8.2e-10
Identity = 44/78 (56.41%), Postives = 55/78 (70.51%), Query Frame = 0
Query: 10 GEASSYHQRQYPKRPHQPPQRHGHYNIPNQASSSCSLSSSLEALVRKYMWRNYAFLQSQV 69
GE S Y R+Y + P QP Q H +++I NQ+ SS S S+E+L ++YM RN A LQSQ
Sbjct: 31 GEVSGYCPRKYHEWPQQPIQ-HLNHHILNQSHSSSSSLPSMESLFQEYMQRNDALLQSQA 90
Query: 70 TSIKNLELQMGQITSDIS 88
SIKNLELQMGQI +DIS
Sbjct: 91 ASIKNLELQMGQIANDIS 107
BLAST of CsaV3_4G008630 vs. ExPASy TrEMBL
Match:
A0A5D3D2S0 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold306G00800 PE=4 SV=1)
HSP 1 Score: 63.5 bits (153), Expect = 5.0e-07
Identity = 40/83 (48.19%), Postives = 52/83 (62.65%), Query Frame = 0
Query: 7 NYKGEASSYHQRQYPKRPHQPPQRHGHYNIPNQASSSCSLS-SSLEALVRKYMWRNYAFL 66
NY+GEA + QR Y RPH +H QA+++ S SS+ AL+RKYM R AF+
Sbjct: 122 NYRGEAPDHRQRHY-DRPHYSAPQH------QQATTNTPSSFSSMVALLRKYMQRKDAFM 181
Query: 67 QSQVTSIKNLELQMGQITSDISG 89
QSQ TSI NLE+ +GQ+ D SG
Sbjct: 182 QSQTTSIINLEIHLGQLAKDFSG 197
BLAST of CsaV3_4G008630 vs. ExPASy TrEMBL
Match:
A0A0A0KN83 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G403040 PE=4 SV=1)
HSP 1 Score: 54.7 bits (130), Expect = 2.3e-04
Identity = 25/42 (59.52%), Postives = 34/42 (80.95%), Query Frame = 0
Query: 46 LSSSLEALVRKYMWRNYAFLQSQVTSIKNLELQMGQITSDIS 88
++ +EAL R+YM RN A LQSQ +SIKNLELQ+GQ+ +D+S
Sbjct: 44 ITKDMEALFREYMQRNDALLQSQASSIKNLELQLGQLANDVS 85
BLAST of CsaV3_4G008630 vs. ExPASy TrEMBL
Match:
A0A5A7U1G5 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold94G00940 PE=4 SV=1)
HSP 1 Score: 53.1 bits (126), Expect = 6.7e-04
Identity = 25/39 (64.10%), Postives = 32/39 (82.05%), Query Frame = 0
Query: 50 LEALVRKYMWRNYAFLQSQVTSIKNLELQMGQITSDISG 89
+E L+R+YM RN A LQ+Q TSIKNL+LQ+ Q+ SDISG
Sbjct: 1 METLLREYMQRNDALLQTQATSIKNLKLQLAQLASDISG 39
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
KAE8649272.1 | 3.7e-41 | 100.00 | hypothetical protein Csa_023796, partial [Cucumis sativus] | [more] |
TYK27798.1 | 2.0e-10 | 54.65 | hypothetical protein E5676_scaffold749G00200 [Cucumis melo var. makuwa] | [more] |
KAA0040852.1 | 1.0e-06 | 48.19 | hypothetical protein E6C27_scaffold333G00770 [Cucumis melo var. makuwa] >TYK1782... | [more] |
XP_038882405.1 | 3.7e-04 | 41.77 | uncharacterized protein LOC120073674 [Benincasa hispida] | [more] |
XP_038889363.1 | 3.7e-04 | 36.47 | uncharacterized protein LOC120079279 [Benincasa hispida] | [more] |
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A5D3DWD5 | 9.7e-11 | 54.65 | Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... | [more] |
A0A0A0KMN3 | 8.2e-10 | 56.41 | Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G055570 PE=4 SV=1 | [more] |
A0A5D3D2S0 | 5.0e-07 | 48.19 | Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... | [more] |
A0A0A0KN83 | 2.3e-04 | 59.52 | Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G403040 PE=4 SV=1 | [more] |
A0A5A7U1G5 | 6.7e-04 | 64.10 | Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... | [more] |
Match Name | E-value | Identity | Description | |