CsaV3_4G008630.1 (mRNA) Cucumber (Chinese Long) v3

Overview


Name	CsaV3_4G008630.1
Type	mRNA
Organism	Cucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Description	Unknown protein
Location	chr4: 6110852 .. 6111181 (+)
Sequence length	267
RNA-Seq Expression	CsaV3_4G008630.1
Synteny	CsaV3_4G008630.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCGGATGAAAAGAAACATACCAATTTTAGTTGGAGAGGTCACGAAAAAAACGTGAAATAGCGACAAAATGGTCAATTGAATTACAAAGGTGAAGCCTCTAGTTATCACCAAAGACAATATCCCAAAAGACCACATCAACCACCTCAACGCCATGGCCACTACAACATTCCTAACCAAGCTTCTTCATCTTGTTCATTATCATCATCATTGGAAGCCCTTGTGCGCAAATATATGTGGAGGAATTATGCCTTTCTACAAAGCCAAGTCACATCTATTAAAAATCTAGAATTACAAATGGGGCAAATAACTAGTGACATCTCTGGGTGA

mRNA sequence

CGACAAAATGGTCAATTGAATTACAAAGGTGAAGCCTCTAGTTATCACCAAAGACAATATCCCAAAAGACCACATCAACCACCTCAACGCCATGGCCACTACAACATTCCTAACCAAGCTTCTTCATCTTGTTCATTATCATCATCATTGGAAGCCCTTGTGCGCAAATATATGTGGAGGAATTATGCCTTTCTACAAAGCCAAGTCACATCTATTAAAAATCTAGAATTACAAATGGGGCAAATAACTAGTGACATCTCTGGGTGA

Coding sequence (CDS)

CGACAAAATGGTCAATTGAATTACAAAGGTGAAGCCTCTAGTTATCACCAAAGACAATATCCCAAAAGACCACATCAACCACCTCAACGCCATGGCCACTACAACATTCCTAACCAAGCTTCTTCATCTTGTTCATTATCATCATCATTGGAAGCCCTTGTGCGCAAATATATGTGGAGGAATTATGCCTTTCTACAAAGCCAAGTCACATCTATTAAAAATCTAGAATTACAAATGGGGCAAATAACTAGTGACATCTCTGGGTGA

Protein sequence

RQNGQLNYKGEASSYHQRQYPKRPHQPPQRHGHYNIPNQASSSCSLSSSLEALVRKYMWRNYAFLQSQVTSIKNLELQMGQITSDISG*

Homology

[Close]

BLAST of CsaV3_4G008630.1 vs. NCBI nr
Match: KAE8649272.1 (hypothetical protein Csa_023796, partial [Cucumis sativus])

HSP 1 Score: 177.9 bits (450), Expect = 3.7e-41
Identity = 88/88 (100.00%), Postives = 88/88 (100.00%), Query Frame = 0


Query: 1  RQNGQLNYKGEASSYHQRQYPKRPHQPPQRHGHYNIPNQASSSCSLSSSLEALVRKYMWR 60
          RQNGQLNYKGEASSYHQRQYPKRPHQPPQRHGHYNIPNQASSSCSLSSSLEALVRKYMWR
Sbjct: 1  RQNGQLNYKGEASSYHQRQYPKRPHQPPQRHGHYNIPNQASSSCSLSSSLEALVRKYMWR 60

Query: 61 NYAFLQSQVTSIKNLELQMGQITSDISG 89
          NYAFLQSQVTSIKNLELQMGQITSDISG
Sbjct: 61 NYAFLQSQVTSIKNLELQMGQITSDISG 88

[Close]

BLAST of CsaV3_4G008630.1 vs. NCBI nr
Match: TYK27798.1 (hypothetical protein E5676_scaffold749G00200 [Cucumis melo var. makuwa])

HSP 1 Score: 75.9 bits (185), Expect = 2.0e-10
Identity = 47/86 (54.65%), Postives = 54/86 (62.79%), Query Frame = 0


Query: 4  GQLNYKGEASSYHQRQYPKRPHQ--PPQRHGHYNIPNQASSSCSLSSSLEALVRKYMWRN 63
          GQ +Y G+AS Y QRQ+  RPH   P Q+    N P       S SSS+E L+R YM RN
Sbjct: 16 GQGSYHGKASGYRQRQHQDRPHHSTPQQQQATTNTP-------SFSSSMETLIRGYMKRN 75

Query: 64 YAFLQSQVTSIKNLELQMGQITSDIS 88
           A LQSQ TSI+NLELQMGQI  D S
Sbjct: 76 DALLQSQATSIRNLELQMGQIAIDFS 94

[Close]

BLAST of CsaV3_4G008630.1 vs. NCBI nr
Match: KAA0040852.1 (hypothetical protein E6C27_scaffold333G00770 [Cucumis melo var. makuwa] >TYK17828.1 hypothetical protein E5676_scaffold306G00800 [Cucumis melo var. makuwa])

HSP 1 Score: 63.5 bits (153), Expect = 1.0e-06
Identity = 40/83 (48.19%), Postives = 52/83 (62.65%), Query Frame = 0


Query: 7   NYKGEASSYHQRQYPKRPHQPPQRHGHYNIPNQASSSCSLS-SSLEALVRKYMWRNYAFL 66
           NY+GEA  + QR Y  RPH    +H       QA+++   S SS+ AL+RKYM R  AF+
Sbjct: 122 NYRGEAPDHRQRHY-DRPHYSAPQH------QQATTNTPSSFSSMVALLRKYMQRKDAFM 181

Query: 67  QSQVTSIKNLELQMGQITSDISG 89
           QSQ TSI NLE+ +GQ+  D SG
Sbjct: 182 QSQTTSIINLEIHLGQLAKDFSG 197

[Close]

BLAST of CsaV3_4G008630.1 vs. NCBI nr
Match: XP_038882405.1 (uncharacterized protein LOC120073674 [Benincasa hispida])

HSP 1 Score: 55.1 bits (131), Expect = 3.7e-04
Identity = 33/79 (41.77%), Postives = 52/79 (65.82%), Query Frame = 0


Query: 8   YKGEASSYHQRQYPKRPHQPPQRHGHYNIPNQASSSCSLSSSLEALVRKYMWRNYAFLQS 67
           +KG    +HQ+    +PHQ   ++ H    +QASSS +L SSLEA +++Y+ +N A +QS
Sbjct: 193 HKGNPLGFHQQPQGHQPHQSRNQYNH----DQASSSNAL-SSLEAFLKEYIQKNDALIQS 252

Query: 68  QVTSIKNLELQMGQITSDI 87
           Q TSI+ +ELQ+GQ  + +
Sbjct: 253 QATSIRIVELQVGQFANGL 266

[Close]

BLAST of CsaV3_4G008630.1 vs. NCBI nr
Match: XP_038889363.1 (uncharacterized protein LOC120079279 [Benincasa hispida])

HSP 1 Score: 55.1 bits (131), Expect = 3.7e-04
Identity = 31/85 (36.47%), Postives = 58/85 (68.24%), Query Frame = 0


Query: 2   QNGQLNYKGEASSYHQRQYPKRPHQPPQRHGHYNIPNQASSSCSLSSSLEALVRKYMWRN 61
           Q+     +G +  +HQ Q   + HQP  +    N+P+ +++S + SSSLE+L+++Y+ +N
Sbjct: 284 QSNNFENRGNSPPFHQNQ--NQGHQPQPQ----NLPSSSNTSAN-SSSLESLLKQYIEKN 343

Query: 62  YAFLQSQVTSIKNLELQMGQITSDI 87
              +QSQV+SI+NLE+Q+GQ+ +++
Sbjct: 344 DVVMQSQVSSIRNLEIQVGQLATEL 361

[Close]

BLAST of CsaV3_4G008630.1 vs. ExPASy TrEMBL
Match: A0A5D3DWD5 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold749G00200 PE=4 SV=1)

HSP 1 Score: 75.9 bits (185), Expect = 9.7e-11
Identity = 47/86 (54.65%), Postives = 54/86 (62.79%), Query Frame = 0


Query: 4  GQLNYKGEASSYHQRQYPKRPHQ--PPQRHGHYNIPNQASSSCSLSSSLEALVRKYMWRN 63
          GQ +Y G+AS Y QRQ+  RPH   P Q+    N P       S SSS+E L+R YM RN
Sbjct: 16 GQGSYHGKASGYRQRQHQDRPHHSTPQQQQATTNTP-------SFSSSMETLIRGYMKRN 75

Query: 64 YAFLQSQVTSIKNLELQMGQITSDIS 88
           A LQSQ TSI+NLELQMGQI  D S
Sbjct: 76 DALLQSQATSIRNLELQMGQIAIDFS 94

[Close]

BLAST of CsaV3_4G008630.1 vs. ExPASy TrEMBL
Match: A0A0A0KMN3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G055570 PE=4 SV=1)

HSP 1 Score: 72.8 bits (177), Expect = 8.2e-10
Identity = 44/78 (56.41%), Postives = 55/78 (70.51%), Query Frame = 0


Query: 10  GEASSYHQRQYPKRPHQPPQRHGHYNIPNQASSSCSLSSSLEALVRKYMWRNYAFLQSQV 69
           GE S Y  R+Y + P QP Q H +++I NQ+ SS S   S+E+L ++YM RN A LQSQ 
Sbjct: 31  GEVSGYCPRKYHEWPQQPIQ-HLNHHILNQSHSSSSSLPSMESLFQEYMQRNDALLQSQA 90

Query: 70  TSIKNLELQMGQITSDIS 88
            SIKNLELQMGQI +DIS
Sbjct: 91  ASIKNLELQMGQIANDIS 107

[Close]

BLAST of CsaV3_4G008630.1 vs. ExPASy TrEMBL
Match: A0A5D3D2S0 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold306G00800 PE=4 SV=1)

HSP 1 Score: 63.5 bits (153), Expect = 5.0e-07
Identity = 40/83 (48.19%), Postives = 52/83 (62.65%), Query Frame = 0


Query: 7   NYKGEASSYHQRQYPKRPHQPPQRHGHYNIPNQASSSCSLS-SSLEALVRKYMWRNYAFL 66
           NY+GEA  + QR Y  RPH    +H       QA+++   S SS+ AL+RKYM R  AF+
Sbjct: 122 NYRGEAPDHRQRHY-DRPHYSAPQH------QQATTNTPSSFSSMVALLRKYMQRKDAFM 181

Query: 67  QSQVTSIKNLELQMGQITSDISG 89
           QSQ TSI NLE+ +GQ+  D SG
Sbjct: 182 QSQTTSIINLEIHLGQLAKDFSG 197

[Close]

BLAST of CsaV3_4G008630.1 vs. ExPASy TrEMBL
Match: A0A0A0KN83 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G403040 PE=4 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 2.3e-04
Identity = 25/42 (59.52%), Postives = 34/42 (80.95%), Query Frame = 0


Query: 46 LSSSLEALVRKYMWRNYAFLQSQVTSIKNLELQMGQITSDIS 88
          ++  +EAL R+YM RN A LQSQ +SIKNLELQ+GQ+ +D+S
Sbjct: 44 ITKDMEALFREYMQRNDALLQSQASSIKNLELQLGQLANDVS 85

[Close]

BLAST of CsaV3_4G008630.1 vs. ExPASy TrEMBL
Match: A0A5A7U1G5 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold94G00940 PE=4 SV=1)

HSP 1 Score: 53.1 bits (126), Expect = 6.7e-04
Identity = 25/39 (64.10%), Postives = 32/39 (82.05%), Query Frame = 0


Query: 50 LEALVRKYMWRNYAFLQSQVTSIKNLELQMGQITSDISG 89
          +E L+R+YM RN A LQ+Q TSIKNL+LQ+ Q+ SDISG
Sbjct: 1  METLLREYMQRNDALLQTQATSIKNLKLQLAQLASDISG 39

The following BLAST results are available for this feature:

BLAST of CsaV3_4G008630.1 vs. NCBI nr


Match Name	E-value	Identity	Description
KAE8649272.1	3.7e-41	100.00	hypothetical protein Csa_023796, partial [Cucumis sativus]	[more]
TYK27798.1	2.0e-10	54.65	hypothetical protein E5676_scaffold749G00200 [Cucumis melo var. makuwa]	[more]
KAA0040852.1	1.0e-06	48.19	hypothetical protein E6C27_scaffold333G00770 [Cucumis melo var. makuwa] >TYK1782...	[more]
XP_038882405.1	3.7e-04	41.77	uncharacterized protein LOC120073674 [Benincasa hispida]	[more]
XP_038889363.1	3.7e-04	36.47	uncharacterized protein LOC120079279 [Benincasa hispida]	[more]

BLAST of CsaV3_4G008630.1 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CsaV3_4G008630.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3DWD5	9.7e-11	54.65	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A0A0KMN3	8.2e-10	56.41	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G055570 PE=4 SV=1	[more]
A0A5D3D2S0	5.0e-07	48.19	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A0A0KN83	2.3e-04	59.52	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G403040 PE=4 SV=1	[more]
A0A5A7U1G5	6.7e-04	64.10	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]

BLAST of CsaV3_4G008630.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..42

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CsaV3_4G008630	CsaV3_4G008630	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CsaV3_4G008630.1.exon1	CsaV3_4G008630.1.exon1	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CsaV3_4G008630.1.cds1	CsaV3_4G008630.1.cds1	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CsaV3_4G008630.1	CsaV3_4G008630.1-protein	polypeptide