CsaV3_4G006910 (gene) Cucumber (Chinese Long) v3

Overview


Name	CsaV3_4G006910
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Description	Unknown protein
Location	chr4: 4694008 .. 4695468 (-)
RNA-Seq Expression	CsaV3_4G006910
Synteny	CsaV3_4G006910

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCGGAGAAAAATCAGAAGCCCAAAGGCTCTCAGCTCGAGGCCAGAGCCGTTGCCCTTAAAGTCATCTGCCCGATTTGCAAGGTTCCTTTTTCTTTGCTTCAATCTTTCTTTCTTTCTTTCTTATAATTGTATTCCATTGGATTTTAGTGTTCTTCCTCTCTTTTAATCTGTATCGTAATCGTACTCCTGTTTTGATGTCATAACAACTGCAACTGCCAACCCCATATTCAATTATCATTTTTCCGTTCTTATGTATAGTGCACTTGATATGGCTGTGCGTTGGTTTCAATTGATATGAAATTCGTTGGAGTTTCATTAGTTTTTTGTCTTCTTTTCTCAAGGCTTGAGTACATAGATTATTTTCACGGATCATTTATTCTAGGGTTTGAAAGAATTCGAAATGGTTTTGTTTACTGGAAATTTTTTAAGCCTTAATTCTAGATGATAGTGAGGTTTGAGTTATACATATAGTACAATCTATTGTGACCAACTACTTGAGATACCGATTAGAAACTATGATACATTATTTTCTGTGTTGCTATGATCTTGTCTTGAGAAATTTTCTTGTTGCAAGAATTGCTGTATGGTTATGTGTTTGTTTGGGCGGATTAGTCAAATTATGCTTGAGTTGAGATTGTTGGGGGAAAAAAATACTCGATAGGATAGACTATAGAGGGAACCTGATGAGGATTTCTCTTTTTGTTTACTCCTTTGGACAACTAAGAAACGGAGAAGTATATGCCACAAGAAAGGGAGACAACAAATTAGAGGATAGGATTGAGGGAACCCTGCCTTAAAAGAGGCGAAAGGAATATTATAAAAAGAGATCCTTCCCATTGTTAATAATCATTAGAAGACTAACAAAAAACGAAAAAGCGAGTGATTAAAACACCAACCAGAGGCCAAACAACTGCAGATGATTAAAAGAAGTATCATAGGAAATAATCTTATTTTCAAAGATTATGCCTTTGGAACCTCGGCCCCTTGGAGCTTCTTCTACCAGCCAATCAATGAGCAAGGTGGCAATGGGGAAAACAAATGATTCACATATGCACCATCTCTAAAAACAAACGACGGGGAATGAGATCCATCTTGAGTGTCCATCTTGGGACGTTGATAATGTTGAGTTTGTCTTTTGTGGGTTAATCTGCTGTGGATTGATTTTTCTCTTGGCTTGTGGGACGAAGTCATAGAGACTCTAAATATTGAATTCAACATAGAAGAGAGTGGAATAATGATAGGAAATTAGATATGAATTTGTTTATCCTTGCTTTTGATACTTGAAAGTATATCTGTTCTTCCCCCACGACCGTGTATTTGATCATCTTTTTTCTTTTATTCTAACCTCAGGTACAACTTGCAAATCAGAACCAGTTGGGTGATCATTATGGCTCCAAACATCCAAAGGAAAAGCCCCCATCAGAATCTGGTTGAATCTTCGCTTGCATTTGAAGTATGA

mRNA sequence

ATGCGGAGAAAAATCAGAAGCCCAAAGGCTCTCAGCTCGAGGCCAGAGCCGTTGCCCTTAAAGTCATCTGCCCGATTTGCAAGGTACAACTTGCAAATCAGAACCAGTTGGGTGATCATTATGGCTCCAAACATCCAAAGGAAAAGCCCCCATCAGAATCTGGTTGAATCTTCGCTTGCATTTGAAGTATGA

Coding sequence (CDS)

ATGCGGAGAAAAATCAGAAGCCCAAAGGCTCTCAGCTCGAGGCCAGAGCCGTTGCCCTTAAAGTCATCTGCCCGATTTGCAAGGTACAACTTGCAAATCAGAACCAGTTGGGTGATCATTATGGCTCCAAACATCCAAAGGAAAAGCCCCCATCAGAATCTGGTTGAATCTTCGCTTGCATTTGAAGTATGA

Protein sequence

MRRKIRSPKALSSRPEPLPLKSSARFARYNLQIRTSWVIIMAPNIQRKSPHQNLVESSLAFEV*

Homology

[Close]

BLAST of CsaV3_4G006910 vs. NCBI nr
Match: KGN53441.1 (hypothetical protein Csa_015219 [Cucumis sativus])

HSP 1 Score: 125.2 bits (313), Expect = 2.1e-25
Identity = 63/63 (100.00%), Postives = 63/63 (100.00%), Query Frame = 0


Query: 1  MRRKIRSPKALSSRPEPLPLKSSARFARYNLQIRTSWVIIMAPNIQRKSPHQNLVESSLA 60
          MRRKIRSPKALSSRPEPLPLKSSARFARYNLQIRTSWVIIMAPNIQRKSPHQNLVESSLA
Sbjct: 1  MRRKIRSPKALSSRPEPLPLKSSARFARYNLQIRTSWVIIMAPNIQRKSPHQNLVESSLA 60

Query: 61 FEV 64
          FEV
Sbjct: 61 FEV 63

[Close]

BLAST of CsaV3_4G006910 vs. ExPASy TrEMBL
Match: A0A0A0KZY7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G055360 PE=4 SV=1)

HSP 1 Score: 125.2 bits (313), Expect = 1.0e-25
Identity = 63/63 (100.00%), Postives = 63/63 (100.00%), Query Frame = 0


Query: 1  MRRKIRSPKALSSRPEPLPLKSSARFARYNLQIRTSWVIIMAPNIQRKSPHQNLVESSLA 60
          MRRKIRSPKALSSRPEPLPLKSSARFARYNLQIRTSWVIIMAPNIQRKSPHQNLVESSLA
Sbjct: 1  MRRKIRSPKALSSRPEPLPLKSSARFARYNLQIRTSWVIIMAPNIQRKSPHQNLVESSLA 60

Query: 61 FEV 64
          FEV
Sbjct: 61 FEV 63

The following BLAST results are available for this feature:

BLAST of CsaV3_4G006910 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN53441.1	2.1e-25	100.00	hypothetical protein Csa_015219 [Cucumis sativus]	[more]

BLAST of CsaV3_4G006910 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CsaV3_4G006910 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KZY7	1.0e-25	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G055360 PE=4 SV=1	[more]

BLAST of CsaV3_4G006910 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_4G006910.1	CsaV3_4G006910.1	mRNA